genome.fa.s5.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  159  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47851921--47852192	105	2.6	105	98	0	526	40	19	9	30	1.84
47852430--47852517	27	3.3	27	84	6	99	22	38	23	14	1.92
47856868--47856901	14	2.4	14	95	0	59	47	5	11	35	1.65
47861656--47861872	84	2.5	87	81	4	244	29	19	18	32	1.96
47861656--47861867	42	5.0	44	73	5	202	29	19	19	32	1.96
47862235--47862285	21	2.4	21	90	0	75	1	45	17	35	1.60
47862170--47862329	87	1.8	87	89	0	239	13	30	17	38	1.88
47868986--47869259	37	6.6	45	84	11	240	27	21	14	35	1.93
47870684--47870755	31	2.4	30	90	4	117	54	16	9	19	1.70
47871748--47871782	14	2.4	14	90	4	52	42	31	0	25	1.55
47872559--47872638	14	5.6	14	70	14	56	47	31	0	21	1.51
47872597--47872635	21	1.9	20	89	5	60	43	35	0	20	1.52
47872695--47873306	114	5.4	111	77	6	528	26	23	18	31	1.98
47872695--47873251	227	2.4	227	78	6	613	26	23	18	32	1.97
47873928--47873980	17	3.2	17	81	5	63	35	0	3	60	1.15
47877978--47878003	3	8.7	3	100	0	52	0	0	69	30	0.89
47878268--47878297	2	15.0	2	100	0	60	50	0	0	50	1.00
47883220--47883252	12	2.8	12	100	0	66	42	0	0	57	0.98
47884377--47884625	42	5.9	42	89	0	363	28	14	26	31	1.94
47885638--47885729	25	3.7	25	94	0	157	19	40	10	29	1.86
47887801--47887852	25	2.1	25	100	0	104	23	26	23	26	2.00
47888952--47889146	54	3.6	53	77	4	183	27	12	15	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47888952--47889108	27	5.8	27	78	4	156	27	12	15	43	1.83
47890647--47890700	25	2.2	25	96	0	99	14	48	14	22	1.81
47890651--47890706	25	2.4	23	88	8	78	14	48	16	21	1.81
47890736--47890783	22	2.2	22	100	0	96	47	18	4	29	1.67
47896068--47896195	49	2.6	49	87	7	197	25	16	28	29	1.97
47897906--47898262	104	3.4	104	91	1	558	31	29	19	19	1.97
47898609--47898666	30	1.9	30	85	0	80	31	22	6	39	1.80
47901085--47901170	43	2.0	43	97	0	163	38	23	10	27	1.87
47902643--47902781	46	3.0	46	84	4	199	35	7	25	30	1.85
47905036--47905068	3	11.0	3	100	0	66	66	0	0	33	0.92
47905529--47905570	19	2.2	19	87	12	59	7	19	7	66	1.39
47905701--47905854	77	2.0	77	96	0	281	31	14	3	50	1.61
47905857--47905888	16	2.1	16	94	5	57	40	0	0	59	0.97
47905844--47905896	27	2.1	25	86	10	72	43	0	0	56	0.99
47909040--47909093	26	2.1	26	85	0	72	31	12	7	48	1.69
47909391--47909418	12	2.3	12	100	0	56	50	7	0	42	1.30
47912677--47912727	17	2.8	18	82	11	59	78	7	11	1	1.04
47913162--47913198	18	2.0	20	84	10	51	75	13	10	0	1.04
47914237--47914834	44	13.6	44	72	7	356	28	15	26	29	1.96
47914207--47914834	132	4.8	132	91	0	997	28	15	25	30	1.96
47914207--47914966	396	1.9	397	81	6	932	28	16	26	29	1.96
47914819--47915635	132	6.2	132	95	0	1386	28	19	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47915025--47915616	44	13.5	41	63	16	143	28	19	25	26	1.98
47915669--47915999	40	7.8	40	68	16	184	34	22	20	22	1.97
47915641--47915999	131	2.8	131	85	4	471	34	22	20	22	1.97
47917443--47917496	26	2.1	26	85	0	72	31	12	9	46	1.74
47922322--47922401	9	9.0	9	73	11	51	62	1	3	32	1.21
47922574--47922600	3	9.0	3	100	0	54	66	0	0	33	0.92
47923603--47923653	27	1.9	26	84	11	68	54	11	9	23	1.66
47924110--47924210	32	3.2	31	66	27	77	54	7	6	30	1.56
47924085--47924212	63	2.0	65	90	3	206	54	7	7	31	1.54
47924937--47924964	13	2.2	13	100	0	56	85	0	7	7	0.73
47930910--47930969	29	2.0	29	87	3	84	40	5	15	40	1.68
47941700--47941809	55	2.0	55	92	0	184	25	20	27	27	1.99
47947092--47947152	12	5.3	12	74	18	58	73	8	1	16	1.14
47947949--47947975	14	1.9	14	100	0	54	29	14	29	25	1.95
47948745--47948782	15	2.6	15	91	4	60	73	5	5	15	1.19
47948820--47948857	8	4.9	8	87	3	51	76	5	0	18	0.97
47948997--47949022	8	3.2	8	100	0	52	46	0	53	0	1.00
47955742--47955853	58	1.9	58	100	0	224	30	16	17	35	1.92
47956557--47956630	31	2.4	31	82	8	89	52	2	2	41	1.29
47956569--47956647	31	2.6	31	84	7	92	54	2	1	41	1.22
47962270--47962331	26	2.4	25	74	10	63	40	0	3	56	1.15
47962849--47962873	12	2.1	12	100	0	50	24	36	24	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47968231--47968282	22	2.3	23	86	6	70	46	0	25	28	1.53
47973191--47973223	11	3.1	11	86	4	50	69	18	0	12	1.18
47981687--47981711	13	1.9	13	100	0	50	48	24	0	28	1.52
47982093--47982173	29	2.8	29	88	0	108	51	3	7	37	1.48
47988706--47988800	30	3.2	29	77	5	100	45	2	4	48	1.33
47988927--47988957	16	1.9	16	93	0	53	45	0	6	48	1.28
48001480--48001523	22	2.0	22	95	0	79	50	11	18	20	1.77
48001864--48001931	16	4.2	16	96	0	118	27	0	36	35	1.58
48001912--48002006	45	2.1	44	88	1	136	34	5	27	32	1.79
48002168--48002202	18	2.0	17	88	5	52	54	0	0	45	0.99
48002126--48002198	27	2.7	27	76	8	76	52	2	0	45	1.15
48002087--48002358	144	1.9	147	94	3	487	46	3	2	47	1.34
48002312--48002346	18	2.0	17	88	5	52	54	0	0	45	0.99
48008389--48008431	11	4.0	11	84	3	61	30	2	46	20	1.63
48008389--48008431	21	2.0	21	90	4	68	30	2	46	20	1.63
48012478--48012570	18	5.2	18	84	0	114	33	13	21	31	1.93
48013103--48013145	11	4.0	11	84	3	61	30	2	46	20	1.63
48013103--48013145	21	2.0	21	90	4	68	30	2	46	20	1.63
48017773--48017895	63	1.9	64	95	1	221	24	18	14	42	1.88
48018167--48018199	17	1.9	17	100	0	66	18	30	18	33	1.94
48018900--48018939	21	1.9	21	84	0	53	42	7	35	15	1.75
48020537--48020897	180	2.0	180	97	0	686	28	17	13	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48021644--48022090	90	5.0	89	86	3	544	28	25	24	21	1.99
48021644--48022090	135	3.3	134	80	4	508	28	25	24	21	1.99
48021644--48022090	45	10.0	45	78	7	455	28	25	24	21	1.99
48022180--48022472	100	2.9	99	81	6	324	29	19	22	27	1.98
48022285--48022443	50	3.2	49	77	3	165	30	18	22	28	1.97
48022311--48022472	50	3.2	49	78	6	173	32	17	21	28	1.96
48022563--48022766	44	4.7	43	72	8	151	32	19	19	28	1.96
48022522--48022725	88	2.3	88	86	0	300	32	20	20	26	1.97
48022522--48022766	88	2.8	87	81	2	240	32	19	20	27	1.97
48023559--48023610	21	2.5	21	78	12	54	65	5	19	9	1.42
48025341--48025546	108	1.9	108	91	4	335	29	16	17	36	1.92
48026879--48026908	3	10.0	3	92	0	51	66	3	0	30	1.07
48030649--48030685	18	2.1	18	94	0	65	8	24	27	40	1.83
48033453--48033490	19	2.1	19	90	5	60	31	0	15	52	1.43
48033540--48033584	19	2.3	21	75	17	53	31	22	4	42	1.73
48036664--48036798	58	2.3	58	94	0	234	35	14	23	25	1.94
48036709--48036740	7	4.6	7	96	0	55	40	9	31	18	1.83
48036761--48036818	7	8.3	7	84	0	62	41	5	31	22	1.76
48036766--48036818	21	2.5	21	87	0	70	43	3	32	20	1.70
48036761--48036818	14	4.1	14	84	0	71	41	5	31	22	1.76
48036709--48036861	79	1.9	79	89	0	234	36	11	24	26	1.90
48036789--48037016	51	4.5	51	90	2	343	32	13	24	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48043084--48043152	28	2.5	27	81	6	68	46	2	1	49	1.25
48049056--48049086	14	2.2	14	94	0	53	64	0	3	32	1.09
48050995--48051059	32	2.1	32	91	2	105	47	9	10	32	1.70
48054196--48054224	12	2.4	12	100	0	58	0	13	13	72	1.13
48054229--48054276	19	2.5	19	86	3	60	4	4	8	83	0.90
48054242--48054284	10	4.3	10	82	11	52	0	4	6	88	0.63
48054241--48054284	19	2.3	19	92	4	70	0	4	9	86	0.70
48054241--48054277	9	4.0	9	89	3	56	0	2	8	89	0.58
48054836--48054900	32	2.1	32	97	2	123	47	12	9	30	1.72
48058820--48058882	33	1.9	33	87	12	94	33	1	3	61	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185