genome.fa.s5.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  17  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4618614--4618645	16	2.0	16	100	0	64	31	0	31	37	1.58
4619145--4619187	18	2.4	18	84	0	59	46	9	27	16	1.77
4620022--4620059	20	1.9	20	84	10	51	55	7	2	34	1.43
4621046--4621123	11	7.0	11	73	23	74	44	1	29	24	1.62
4621046--4621123	22	3.5	22	83	16	99	44	1	29	24	1.62
4621046--4621122	33	2.3	35	84	8	106	44	1	29	24	1.62
4625397--4625421	5	5.0	5	100	0	50	0	20	0	80	0.72
4633790--4633845	27	2.1	26	93	3	94	14	23	3	58	1.51
4634674--4634728	23	2.4	23	84	3	76	41	5	1	50	1.36
4640273--4640305	6	5.5	6	96	0	57	39	0	0	60	0.97
4641006--4641068	25	2.4	26	84	10	76	17	15	12	53	1.72
4642261--4642408	61	2.4	62	84	5	158	27	25	21	25	1.99
4675495--4675555	30	2.0	30	93	0	104	11	26	34	27	1.91
4677611--4677646	18	2.0	18	88	0	54	27	0	0	72	0.85
4678099--4678132	16	2.1	16	100	0	68	29	17	14	38	1.90
4681296--4681341	6	7.7	6	95	0	83	50	17	0	32	1.47
4681865--4681961	48	2.0	48	97	0	185	36	11	8	44	1.70
4682472--4682733	64	4.1	64	98	0	506	51	12	11	24	1.72
4682869--4682905	7	5.4	7	96	3	67	45	0	24	29	1.53
4705761--4705826	22	3.0	22	86	2	89	31	27	31	9	1.88
4708472--4708592	30	4.2	30	78	5	124	33	3	0	63	1.11
4708529--4708612	39	2.1	40	93	2	143	35	2	0	61	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4708465--4708592	59	2.2	59	92	2	213	34	3	0	62	1.11
4709746--4710001	92	2.8	91	92	2	410	31	20	5	42	1.76
4710500--4710525	5	5.2	5	100	0	52	0	42	0	57	0.98
4714675--4716432	628	2.8	626	86	5	2328	30	19	11	38	1.87
4717754--4717823	8	7.9	8	72	20	50	32	0	1	65	1.01
4717756--4717811	18	2.8	21	84	12	66	33	0	1	64	1.04
4717758--4717828	18	4.0	17	75	15	63	36	0	1	61	1.05
4717721--4717830	37	2.8	37	76	12	103	41	0	1	56	1.10
4718794--4718852	30	2.0	30	89	0	91	30	3	8	57	1.45
4724149--4724189	22	1.9	21	85	14	57	53	19	2	24	1.57
4734376--4734484	41	2.6	41	91	4	175	29	21	28	21	1.98
4734655--4734768	34	3.3	34	78	8	104	33	7	18	40	1.80
4735698--4735746	25	2.0	25	100	0	98	36	20	12	30	1.89
4754983--4755155	84	2.1	84	88	2	258	41	15	17	25	1.88
4755196--4755255	21	2.9	22	80	9	81	56	6	0	36	1.26
4755341--4755382	16	2.5	17	76	7	50	40	0	9	50	1.35
4757205--4757244	20	2.0	20	90	9	64	57	2	0	40	1.12
4758689--4758722	6	5.7	6	96	0	59	55	0	26	17	1.42
4760502--4760544	5	8.0	5	87	7	50	39	0	0	60	0.97
4761360--4761412	23	2.1	26	83	13	67	35	0	7	56	1.28
4776518--4776551	15	2.3	15	94	0	59	44	5	11	38	1.65
4781310--4781375	30	2.2	30	83	0	87	39	4	12	43	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4785532--4785881	125	2.8	125	91	2	564	30	15	21	32	1.94
4788064--4788909	424	2.0	424	98	0	1638	29	19	26	24	1.99
4789409--4789498	10	8.5	10	70	22	51	46	4	7	41	1.53
4789409--4789682	73	4.2	65	75	19	223	44	5	9	40	1.59
4789520--4789554	18	1.9	18	88	0	52	48	2	8	40	1.49
4789409--4789737	55	5.2	64	76	18	237	44	5	10	40	1.60
4789545--4789664	37	3.3	37	65	19	106	43	5	12	39	1.64
4789520--4789682	73	2.2	73	97	0	308	44	4	11	39	1.61
4789582--4789627	18	2.6	18	92	0	83	47	4	6	41	1.49
4789604--4789737	55	2.4	55	97	0	250	44	5	11	39	1.63
4789738--4789796	29	2.0	29	100	0	118	23	0	32	44	1.54
4789773--4789908	18	8.3	18	67	21	102	28	0	24	47	1.52
4789744--4789937	47	4.1	47	96	0	352	27	0	26	46	1.53
4789791--4789983	76	2.5	74	84	9	212	29	0	24	46	1.53
4789885--4789965	29	2.8	29	96	0	144	27	0	28	44	1.55
4789768--4789991	94	2.4	92	85	7	265	28	0	24	46	1.53
4789943--4789983	18	2.3	18	86	0	55	34	0	19	46	1.50
4789838--4789984	76	1.9	76	94	0	258	29	0	25	45	1.54
4789944--4789991	18	2.7	18	78	12	53	33	0	16	50	1.46
4789987--4790055	25	2.7	25	77	6	77	39	10	4	46	1.58
4791221--4791272	25	2.1	24	82	10	61	67	1	0	30	1.02
4791248--4791286	20	2.0	20	85	5	53	61	2	0	35	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4791368--4791433	10	6.5	10	77	3	60	68	0	0	31	0.90
4791368--4791433	31	2.2	30	94	2	114	68	0	0	31	0.90
4791471--4791521	22	2.3	22	100	0	102	41	0	31	27	1.56
4792770--4792811	22	1.9	22	90	0	66	23	0	2	73	0.94
4792828--4792870	20	2.2	20	83	8	52	55	2	0	41	1.12
4797027--4797069	20	2.2	20	82	0	50	44	2	13	39	1.57
4810241--4810268	12	2.3	12	100	0	56	25	28	0	46	1.53
4811258--4811337	41	2.0	41	92	0	133	42	17	5	35	1.71
4814198--4814411	107	2.0	106	91	2	349	32	19	18	29	1.95
4815014--4815092	3	26.7	3	80	5	72	58	1	3	36	1.24
4815126--4815193	16	4.2	17	73	17	56	70	0	4	25	1.05
4820434--4820474	22	1.9	22	85	5	57	60	14	7	17	1.55
4821980--4822016	18	2.2	18	90	9	60	59	13	0	27	1.35
4823078--4823105	8	3.5	8	100	0	56	50	0	0	50	1.00
4823085--4823143	16	3.8	16	73	6	59	47	3	0	49	1.18
4823185--4823227	22	2.0	22	90	4	70	41	9	2	46	1.48
4845751--4845866	57	2.0	57	94	0	205	31	18	20	30	1.96
4846815--4846866	21	2.5	22	75	15	56	55	3	3	36	1.36
4846981--4847021	21	2.0	21	85	0	55	56	4	7	31	1.48
4848818--4848910	43	2.2	43	94	3	161	25	20	20	33	1.97
4847797--4848879	132	8.2	132	92	0	1698	28	22	18	30	1.97
4848686--4849054	175	2.1	175	92	1	605	28	22	18	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4851353--4851391	18	2.2	17	86	13	53	33	0	20	46	1.51
4852642--4852683	11	3.6	12	81	12	52	0	14	2	83	0.75
4852644--4852702	9	6.4	9	81	11	66	0	10	5	84	0.76
4852642--4852683	6	7.2	6	84	10	52	0	14	2	83	0.75
4857495--4857538	21	2.1	21	95	0	79	63	4	2	29	1.26
4857551--4857591	21	2.0	21	85	0	55	56	4	7	31	1.48
4857598--4857634	17	2.1	18	95	5	67	75	0	0	24	0.80
4857597--4857652	15	3.6	15	79	13	60	71	1	0	26	0.96
4857873--4857975	19	5.1	21	84	6	83	42	14	5	36	1.70
4857873--4857930	22	2.6	22	84	7	73	43	17	3	36	1.66
4857886--4858019	19	6.8	19	87	3	160	39	13	7	39	1.73
4857909--4858012	38	2.7	38	95	0	181	39	11	7	41	1.70
4859964--4860139	89	2.0	89	88	0	262	43	30	1	24	1.64
4859973--4860163	89	2.1	89	86	1	258	42	29	2	25	1.66
4860233--4860266	15	2.3	15	90	5	52	35	29	0	35	1.58
4860674--4860865	41	4.7	41	87	3	271	29	20	22	27	1.99
4861034--4861185	75	2.0	75	100	0	304	33	15	13	36	1.87
4865606--4865640	17	2.1	17	88	0	52	62	0	0	37	0.95
4866224--4866278	22	2.6	21	74	5	56	60	16	10	12	1.60
4868940--4868988	20	2.5	20	79	0	53	44	6	14	34	1.70
4869006--4869052	20	2.3	20	85	0	58	44	17	4	34	1.68
4869466--4869507	21	2.0	21	100	0	84	38	4	19	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4870910--4870966	19	3.0	19	94	0	96	29	10	28	31	1.90
4872082--4872152	11	6.4	12	74	25	52	61	0	2	35	1.10
4872102--4872174	30	2.5	28	85	8	101	64	0	1	34	1.02
4872082--4872175	41	2.3	39	87	7	125	64	0	2	32	1.05
4888379--4888406	12	2.3	12	100	0	56	78	0	0	21	0.75
4889858--4889949	34	2.6	35	84	3	123	42	28	9	19	1.83
4909642--4909682	5	8.0	5	84	15	57	21	0	0	78	0.76
4909914--4910160	127	1.9	127	86	3	345	43	9	19	26	1.82
4914959--4914995	19	2.1	18	90	10	58	35	16	21	27	1.94
4915838--4915862	2	12.5	2	100	0	50	52	48	0	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185