genome.fa.s5.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  141  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42899546--42899590	24	1.9	23	86	4	63	46	24	0	28	1.53
42899526--42899822	59	4.8	59	86	11	411	46	25	0	28	1.53
42899570--42899655	41	2.1	42	93	2	147	43	31	0	25	1.55
42899611--42899822	89	2.4	89	94	2	374	46	26	0	27	1.53
42900605--42900883	123	2.3	124	96	1	517	32	20	16	31	1.94
42906498--42906524	13	2.1	13	100	0	54	48	0	22	29	1.51
42906871--42906945	18	4.1	18	73	20	50	61	2	1	34	1.18
42908087--42908128	22	2.0	21	85	4	57	42	2	0	54	1.13
42912438--42912493	21	2.7	21	85	0	85	25	8	35	30	1.86
42912661--42912817	30	5.2	30	89	1	242	35	10	1	51	1.48
42912662--42912817	61	2.6	60	90	2	240	35	10	1	51	1.48
42912836--42912870	16	2.1	17	94	5	63	11	60	0	28	1.32
42920579--42920608	11	2.6	12	94	5	53	0	10	6	83	0.81
42921900--42922016	62	1.9	62	90	0	189	29	7	24	37	1.83
42925118--42925155	6	6.2	6	93	6	67	15	47	0	36	1.46
42926479--42926527	23	2.1	23	85	14	66	51	8	0	40	1.32
42936695--42936739	20	2.3	20	80	3	56	46	17	2	33	1.61
42945782--42945822	21	2.0	21	90	0	64	14	21	19	43	1.87
42949947--42950149	46	4.3	48	88	7	265	35	14	21	28	1.92
42949881--42950149	98	2.7	98	93	0	457	34	14	22	28	1.93
42950113--42950258	37	4.0	37	93	1	242	36	16	21	24	1.94
42951512--42951679	58	3.0	58	87	10	237	22	13	30	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42951531--42951621	28	3.2	28	66	22	80	25	15	31	27	1.95
42951572--42951714	49	2.9	49	93	0	232	23	13	30	32	1.94
42954906--42955108	46	4.3	48	88	7	265	35	14	21	28	1.92
42954840--42955108	98	2.7	98	93	0	457	34	14	22	28	1.93
42955072--42955217	37	4.0	37	93	1	242	36	16	21	24	1.94
42964816--42964849	4	8.5	4	100	0	68	26	0	23	50	1.50
42969362--42969406	19	2.3	21	81	14	60	51	0	2	46	1.13
42970113--42970312	86	2.3	86	79	5	235	37	20	10	32	1.85
42970315--42970366	9	5.5	10	77	8	56	71	0	1	26	0.97
42970572--42970663	29	3.2	30	77	11	104	36	2	2	58	1.22
42970638--42970688	17	3.0	17	73	18	52	39	1	0	58	1.09
42970709--42970930	88	2.5	89	81	5	263	29	9	22	38	1.85
42973870--42973897	2	14.0	2	100	0	56	0	50	0	50	1.00
42975407--42975589	60	3.1	60	76	7	185	40	20	15	22	1.90
42977798--42977839	17	2.5	17	100	0	84	28	26	23	21	1.99
42977798--42977848	17	3.1	16	91	5	68	27	23	25	23	2.00
42984644--42984696	19	2.8	19	81	13	56	58	0	0	41	0.98
42992150--42992179	15	2.1	15	93	6	53	46	0	6	46	1.29
42993530--42993561	14	2.3	14	100	0	64	6	15	46	31	1.71
42998656--42998687	14	2.3	14	100	0	64	6	15	46	31	1.71
42999610--42999871	93	2.8	91	78	2	272	45	14	11	29	1.79
43002437--43002476	21	1.9	21	85	10	55	67	5	5	22	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43002633--43002659	6	4.5	6	100	0	54	18	62	0	18	1.32
43010253--43010314	6	9.7	6	74	19	54	27	1	3	67	1.15
43010258--43010314	20	2.8	20	72	15	55	28	1	3	66	1.18
43010252--43010314	27	2.4	26	76	10	67	26	1	3	68	1.14
43010253--43010315	26	2.4	27	76	10	69	26	1	3	68	1.14
43013138--43013170	14	2.5	13	90	9	57	84	0	0	15	0.61
43013137--43013170	18	1.9	17	88	5	50	82	0	0	17	0.67
43017753--43017809	15	3.7	15	79	11	62	57	3	0	38	1.16
43017764--43017804	5	8.2	5	80	20	50	60	0	0	39	0.96
43017765--43017804	20	1.9	20	90	10	62	60	0	0	40	0.97
43017753--43017804	17	3.1	17	78	8	54	59	1	0	38	1.08
43028731--43028806	29	2.6	29	80	0	89	46	10	13	30	1.76
43029724--43029748	7	3.6	7	100	0	50	88	0	0	12	0.53
43043237--43043289	27	2.0	27	88	7	81	39	5	11	43	1.64
43045324--43045394	31	2.3	31	80	0	79	29	32	18	19	1.96
43045346--43045404	31	1.9	31	85	0	82	27	28	22	22	1.99
43045386--43045543	76	2.1	76	80	2	174	18	22	27	31	1.97
43046436--43046557	22	5.5	22	78	8	131	31	21	15	31	1.94
43046436--43046557	45	2.7	44	80	6	138	31	21	15	31	1.94
43046822--43046923	24	4.3	25	80	13	101	23	12	33	30	1.92
43046808--43046923	24	5.0	24	76	18	95	25	12	31	30	1.93
43046927--43047051	22	5.6	23	73	9	80	33	12	24	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43046948--43047067	23	5.3	23	72	9	86	31	11	25	30	1.91
43046927--43047064	67	2.1	67	98	0	267	32	11	25	30	1.91
43050032--43050132	44	2.3	44	79	5	114	36	15	23	23	1.94
43052987--43053037	23	2.2	23	89	6	77	37	0	7	54	1.29
43058370--43058407	13	3.0	13	84	7	51	76	10	5	7	1.15
43058386--43058432	19	2.5	19	79	6	51	72	6	2	19	1.17
43063111--43063142	16	1.9	17	93	6	57	43	12	0	43	1.42
43063093--43063134	21	2.0	20	86	4	57	50	7	0	42	1.30
43066726--43066757	16	1.9	17	93	6	57	43	12	0	43	1.42
43066708--43066749	21	2.0	20	86	4	57	50	7	0	42	1.30
43073899--43073924	12	2.2	12	100	0	52	30	19	7	42	1.79
43074745--43074813	27	2.5	26	81	4	75	17	36	28	17	1.93
43074866--43075012	10	15.3	9	69	24	72	70	0	27	0	0.96
43074860--43075006	38	3.7	37	81	12	134	69	0	29	0	0.94
43074866--43075006	44	3.3	43	87	5	180	70	0	28	0	0.92
43074865--43074974	14	7.7	14	72	15	91	70	0	30	0	0.88
43075411--43075454	21	2.1	21	100	0	88	52	0	9	38	1.33
43075564--43076132	159	3.6	157	72	15	497	52	7	9	30	1.61
43075432--43076161	322	2.3	322	92	1	1209	51	7	10	31	1.62
43090098--43090245	27	5.5	27	88	2	174	18	27	31	22	1.97
43090097--43090245	81	1.8	81	84	5	203	18	27	30	22	1.98
43095341--43095484	23	6.3	23	82	1	182	30	25	20	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43095341--43095483	46	3.1	46	89	1	216	30	25	20	23	1.98
43101970--43102029	17	3.5	17	80	17	61	31	1	18	48	1.58
43101981--43102027	17	2.8	16	84	9	67	27	2	19	51	1.58
43103254--43103438	46	4.0	46	94	0	316	34	9	28	28	1.88
43103691--43104101	206	2.0	205	98	0	786	31	13	18	36	1.89
43106901--43106981	40	2.0	40	95	0	144	33	13	1	51	1.49
43112294--43112361	35	1.9	35	85	8	93	25	13	4	57	1.54
43123176--43123216	20	2.1	20	86	4	57	36	0	2	60	1.10
43125819--43126579	114	6.7	114	81	2	805	33	16	22	27	1.96
43125890--43126564	228	3.0	228	92	0	1116	33	16	22	27	1.95
43127438--43127464	12	2.2	12	100	0	54	59	0	0	40	0.98
43130273--43130492	43	5.2	41	69	4	143	41	17	7	33	1.77
43130172--43130411	126	1.9	128	86	3	351	41	17	5	35	1.72
43130339--43130489	42	3.6	42	70	5	142	41	15	8	34	1.78
43130293--43130492	85	2.4	85	98	1	386	41	17	7	33	1.78
43130464--43130530	26	2.6	25	86	6	91	43	17	1	37	1.59
43130554--43130652	9	11.0	9	84	0	135	49	19	0	31	1.48
43130556--43130659	36	2.9	36	95	2	185	50	18	0	30	1.47
43135799--43135867	21	3.3	21	87	0	75	37	20	37	4	1.72
43135853--43135900	12	4.0	12	86	0	69	45	16	35	2	1.59
43136318--43136407	42	2.1	43	83	8	112	28	21	23	26	1.99
43136330--43136667	42	8.0	42	82	7	382	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43139091--43139121	9	3.4	9	90	0	53	38	22	12	25	1.90
43141786--43141829	17	2.6	17	100	0	88	65	11	18	4	1.40
43143446--43144188	88	8.4	88	91	0	1171	28	27	24	19	1.99
43144640--43144885	44	5.7	44	73	8	150	29	21	22	26	1.99
43144642--43144886	129	1.9	129	78	5	271	28	21	22	27	1.99
43145582--43145629	3	16.0	3	91	0	51	27	4	6	62	1.38
43145578--43145612	18	1.9	18	94	0	61	20	0	14	65	1.26
43145759--43145793	17	2.1	17	94	0	61	37	11	0	51	1.38
43145870--43145919	24	2.1	24	85	7	66	28	8	0	64	1.22
43147882--43148079	99	2.0	100	86	3	274	37	14	12	36	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185