genome.fa.s5.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  147  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44618394--44618487	40	2.4	40	89	5	147	65	0	2	31	1.04
44619239--44619421	40	4.4	42	75	14	182	30	32	15	21	1.95
44619239--44619421	83	2.2	83	93	3	323	30	32	15	21	1.95
44625055--44625104	25	2.0	25	88	0	73	40	22	20	18	1.92
44626945--44626996	25	2.1	24	85	3	68	38	25	21	15	1.92
44627300--44627354	20	2.7	21	72	11	51	49	18	0	32	1.48
44627470--44627513	21	2.1	21	86	0	61	36	22	0	40	1.54
44633961--44633994	16	2.1	16	88	0	50	50	14	17	17	1.79
44636796--44636836	21	2.0	21	90	0	64	29	21	29	19	1.98
44638742--44638775	16	2.1	16	88	0	50	50	14	17	17	1.79
44640792--44640996	42	5.2	41	77	14	207	25	20	17	36	1.94
44640851--44640916	31	2.1	32	94	2	116	31	19	12	36	1.89
44640810--44640958	73	2.0	73	89	2	228	28	18	14	37	1.91
44641535--44641577	20	2.2	20	91	4	70	62	0	9	27	1.25
44641623--44641661	18	2.2	18	85	0	51	61	2	2	33	1.23
44647688--44647850	44	3.7	44	87	3	179	26	25	20	27	1.99
44647786--44648499	217	3.3	216	90	2	1094	28	23	20	27	1.99
44647587--44648284	261	2.7	261	74	8	652	28	23	19	28	1.98
44647909--44648410	44	11.6	43	71	15	236	28	23	19	28	1.98
44648163--44648499	44	7.8	43	69	17	182	27	23	19	28	1.99
44660430--44660689	128	2.0	129	98	0	504	53	7	7	31	1.57
44662297--44662475	88	2.0	88	91	2	288	45	12	13	27	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44671060--44671341	125	2.3	125	85	4	372	31	15	20	32	1.94
44673829--44674713	29	30.4	29	85	4	1129	33	1	21	43	1.61
44674992--44675047	24	2.3	24	96	0	103	19	17	33	28	1.95
44676874--44676907	15	2.3	15	90	5	52	67	5	0	26	1.13
44677096--44677137	22	1.9	22	90	0	66	33	0	33	33	1.58
44679140--44679187	22	2.1	23	84	3	62	35	56	4	4	1.38
44679520--44679617	27	3.7	26	77	8	81	32	11	17	38	1.85
44680313--44680355	19	2.3	19	80	11	54	51	0	4	44	1.22
44682576--44682602	5	5.4	5	100	0	54	40	0	0	59	0.98
44682962--44682996	19	1.9	17	88	11	52	8	14	28	48	1.73
44683990--44684047	21	2.8	20	89	5	82	43	18	25	12	1.85
44686752--44686836	17	5.2	16	68	17	50	38	3	3	54	1.35
44686745--44686869	48	2.6	49	84	5	155	39	3	4	53	1.36
44696160--44696184	13	1.9	13	100	0	50	32	0	4	64	1.12
44696530--44696643	13	7.8	13	68	21	66	41	7	5	46	1.53
44696549--44696690	23	6.3	23	71	15	116	40	5	8	45	1.58
44696517--44696667	45	3.4	45	99	0	293	40	5	7	46	1.56
44697126--44697168	22	2.0	22	95	0	77	9	20	27	41	1.83
44697229--44697438	43	4.9	43	86	0	267	24	30	20	24	1.99
44697229--44697504	86	3.2	86	82	2	306	28	29	18	23	1.98
44697229--44697499	129	2.1	129	80	2	303	28	29	18	23	1.98
44702407--44702466	10	5.7	11	75	18	56	46	5	0	48	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44702400--44702474	29	2.5	29	81	12	82	48	5	1	45	1.33
44702400--44702472	30	2.4	30	82	8	87	49	4	1	45	1.29
44702407--44702469	20	3.1	20	77	11	74	44	4	0	50	1.23
44703784--44704144	104	3.5	104	88	3	512	33	29	18	18	1.95
44704479--44704743	103	2.6	104	90	3	417	29	29	20	19	1.97
44705078--44705134	30	1.9	30	82	3	71	29	22	7	40	1.80
44706254--44706309	7	8.1	7	80	4	51	39	41	1	17	1.60
44710979--44711023	21	2.1	22	84	12	58	66	8	11	13	1.44
44713334--44713429	35	2.8	35	82	1	104	42	14	21	20	1.88
44713828--44713896	27	2.6	27	93	2	122	44	10	0	44	1.37
44713943--44714000	27	2.1	27	90	0	89	29	29	29	12	1.93
44714098--44714138	10	3.9	11	81	9	50	68	0	31	0	0.90
44714267--44714304	3	12.7	3	100	0	76	0	0	31	68	0.90
44719238--44719641	202	2.0	202	99	0	799	35	25	16	22	1.95
44720027--44720061	13	2.7	13	86	0	52	25	0	0	74	0.82
44720318--44720373	27	2.1	27	96	0	103	8	33	14	42	1.77
44721099--44721197	23	4.3	22	73	16	67	0	31	0	68	0.90
44721126--44721275	22	6.9	23	65	20	74	0	32	0	67	0.96
44721151--44721267	4	29.2	4	73	20	61	0	30	0	68	0.96
44721137--44721279	57	2.6	55	79	13	136	0	34	0	65	0.98
44721137--44721242	10	10.4	10	72	20	69	0	30	0	68	0.96
44721124--44721275	41	3.5	46	70	22	121	0	31	0	67	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44721122--44721223	16	6.7	15	72	15	59	0	28	0	70	0.94
44721095--44721243	35	4.4	34	74	21	118	0	29	0	69	0.93
44721211--44721276	22	3.0	22	86	10	82	0	37	0	62	0.96
44721124--44721274	82	1.9	79	83	8	196	0	31	0	67	0.96
44721309--44721362	27	2.0	27	96	0	99	16	29	29	24	1.97
44721417--44721457	20	2.0	20	95	0	73	58	0	7	34	1.26
44721737--44721783	22	2.0	24	84	8	62	46	4	0	48	1.21
44723282--44723315	17	2.1	17	94	5	61	38	0	11	50	1.39
44734639--44734725	28	3.1	28	71	17	81	51	9	16	22	1.72
44745937--44745988	25	2.0	26	82	10	63	46	11	1	40	1.51
44746419--44746487	15	4.7	15	73	20	56	49	1	1	47	1.19
44751235--44751380	37	4.0	37	93	1	242	24	21	16	36	1.94
44751344--44751612	46	5.6	46	84	10	340	28	22	14	34	1.93
44751387--44751606	52	4.3	52	85	8	299	27	22	14	35	1.93
44751344--44751612	98	2.7	98	93	0	457	28	22	14	34	1.93
44753937--44753981	10	4.5	10	83	10	56	20	2	0	77	0.87
44753935--44753980	19	2.3	20	85	3	58	23	2	0	73	0.94
44754971--44755039	15	4.9	14	79	15	72	0	18	0	81	0.70
44754972--44755031	6	10.7	6	78	18	67	0	16	0	83	0.65
44754973--44755042	27	2.6	28	88	6	101	0	18	0	81	0.69
44754973--44755043	21	3.4	21	81	9	83	0	19	0	80	0.72
44755152--44755202	18	2.9	17	78	18	59	0	21	0	78	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44755152--44755211	22	2.8	22	78	17	72	0	21	1	76	0.87
44755152--44755202	7	7.1	7	82	8	50	0	21	0	78	0.75
44755148--44755208	20	3.2	18	77	17	61	0	22	1	75	0.89
44755593--44755699	30	3.6	30	88	2	153	40	5	18	35	1.74
44755724--44755761	17	2.2	18	90	4	60	26	2	5	65	1.27
44755780--44755813	5	7.0	5	86	6	52	82	17	0	0	0.67
44757502--44757558	29	2.0	28	93	6	98	29	1	0	68	1.00
44757508--44757560	17	3.4	17	65	24	53	33	1	0	64	1.05
44757508--44757572	29	2.2	29	86	5	87	35	3	0	61	1.12
44757544--44757585	11	3.9	11	82	17	61	45	2	0	52	1.13
44757544--44757585	21	2.0	22	90	4	68	45	2	0	52	1.13
44757542--44757591	22	2.3	23	82	6	68	46	2	0	52	1.12
44757550--44757609	21	2.8	22	80	9	63	46	1	1	50	1.21
44758602--44758663	29	2.1	29	81	0	70	25	4	1	67	1.19
44767497--44767569	19	3.5	21	74	9	69	2	30	15	52	1.57
44770076--44770106	13	2.5	12	94	5	53	35	0	48	16	1.46
44770076--44770106	6	5.0	6	92	7	53	35	0	48	16	1.46
44770113--44770305	60	3.3	59	74	11	205	35	4	46	13	1.62
44770086--44770305	118	1.9	118	91	3	363	35	4	46	14	1.64
44773907--44773948	22	2.0	22	85	4	59	66	2	0	30	1.04
44774192--44774242	21	2.4	21	93	0	84	27	41	9	21	1.84
44774371--44774410	16	2.4	16	87	4	53	15	15	0	70	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44774374--44774425	14	3.3	16	76	13	54	17	13	0	69	1.19
44781479--44781520	19	2.2	19	91	0	66	45	9	4	40	1.58
44782882--44782965	45	1.9	43	95	4	150	33	16	22	27	1.96
44802411--44802471	31	2.0	31	83	6	79	39	13	13	34	1.83
44802904--44802946	23	1.9	23	90	4	70	58	2	11	27	1.46
44806058--44806090	15	2.1	15	94	5	57	48	0	0	51	1.00
44808595--44808673	31	2.5	31	81	4	97	44	11	17	26	1.83
44814904--44814955	23	2.4	23	84	9	65	53	0	0	46	1.00
44815227--44815275	19	2.5	20	80	3	55	51	0	8	40	1.32
44820178--44820693	107	4.8	108	81	9	599	29	17	20	33	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185