genome.fa.s5.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  138  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42227303--42227539	118	2.0	120	95	1	433	44	14	7	33	1.74
42231352--42231462	45	2.5	44	83	4	134	27	28	15	28	1.96
42231220--42231476	41	5.8	45	73	11	142	29	23	17	29	1.97
42232252--42232304	24	2.2	24	79	0	61	30	24	13	32	1.93
42232774--42232970	108	1.8	108	87	0	295	45	10	17	26	1.81
42244684--42244720	19	1.9	19	88	0	56	59	5	5	29	1.42
42246397--42246441	24	1.9	23	82	13	56	48	24	6	20	1.73
42252991--42253060	33	2.2	33	82	10	83	31	22	12	32	1.92
42252884--42253123	101	2.4	101	92	0	399	28	25	15	31	1.95
42260851--42261040	88	2.2	88	98	0	362	25	23	24	26	2.00
42261003--42261546	44	12.2	44	70	13	288	27	25	18	28	1.98
42261058--42261318	132	2.0	132	96	0	477	27	26	17	27	1.97
42273511--42273540	3	10.0	3	100	0	60	66	0	0	33	0.92
42274179--42274214	13	2.9	12	88	8	54	11	0	2	86	0.68
42279190--42279243	27	1.9	29	85	7	76	74	0	5	20	1.02
42279189--42279237	10	4.6	11	85	9	59	73	0	6	20	1.04
42279197--42279244	17	2.9	17	76	11	55	77	0	4	18	0.93
42279197--42279246	12	4.5	11	85	9	57	76	0	4	20	0.95
42283244--42283293	24	2.1	24	96	0	91	14	36	16	34	1.88
42284663--42284779	61	1.9	61	92	0	198	30	27	19	22	1.98
42285940--42286007	23	3.0	23	84	0	91	35	23	20	20	1.96
42287507--42289393	943	2.0	943	96	0	3486	32	22	13	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42292537--42292657	61	2.0	61	95	0	215	32	27	18	22	1.97
42293821--42293871	23	2.2	23	96	0	93	27	27	21	23	1.99
42296800--42296833	6	5.7	6	96	0	50	35	20	0	44	1.52
42303929--42303987	30	2.0	30	96	0	109	28	27	3	40	1.72
42306038--42306072	6	5.8	6	93	0	52	34	25	0	40	1.56
42306484--42306667	91	2.0	91	100	0	368	36	16	10	35	1.84
42310877--42310923	6	7.8	6	100	0	94	34	17	0	48	1.47
42310876--42310934	18	3.3	18	90	0	82	32	20	1	45	1.61
42319704--42319728	6	4.2	6	100	0	50	36	16	0	48	1.46
42325465--42325511	6	7.8	6	90	0	76	31	19	2	46	1.61
42325471--42325522	24	2.2	24	96	0	95	30	21	3	44	1.70
42325471--42325522	12	4.3	12	82	0	59	30	21	3	44	1.70
42325464--42325522	18	3.3	18	85	0	73	30	22	3	44	1.69
42329496--42329536	21	2.0	20	90	4	64	36	4	2	56	1.34
42329535--42329669	48	2.8	47	93	0	198	34	7	8	48	1.62
42329552--42329669	23	5.0	23	75	18	116	33	8	9	49	1.65
42330107--42330451	85	4.1	85	100	0	690	37	13	9	38	1.77
42330450--42330694	121	2.0	121	100	0	490	37	12	9	40	1.77
42331232--42331307	23	3.3	23	94	0	134	46	26	6	21	1.75
42331289--42331338	22	2.4	21	83	6	66	62	18	4	16	1.48
42332203--42332266	33	1.9	34	87	6	96	34	4	17	43	1.69
42334238--42334264	4	6.8	4	100	0	54	51	22	0	25	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42336775--42336869	44	2.1	46	84	7	124	34	24	5	35	1.78
42336851--42336906	16	3.5	16	85	0	85	28	26	5	39	1.78
42340449--42340541	45	2.1	45	91	0	150	35	1	16	47	1.54
42340737--42340863	42	3.0	42	83	0	155	17	21	17	44	1.87
42340769--42340865	21	4.6	21	73	0	68	15	20	17	46	1.84
42341185--42341235	23	2.2	23	92	0	84	43	19	9	27	1.82
42346139--42346386	44	5.4	42	70	22	171	25	20	18	34	1.96
42346105--42346577	94	5.1	95	80	7	449	28	19	19	33	1.96
42346121--42346490	95	3.9	95	83	5	416	26	18	19	34	1.95
42346234--42346490	44	5.6	43	69	17	124	28	18	19	33	1.95
42346136--42346639	92	5.4	94	80	6	426	28	19	19	32	1.96
42352651--42352684	15	2.2	16	89	5	52	55	5	11	26	1.58
42353113--42353191	40	2.0	41	85	9	110	34	1	0	64	1.02
42356058--42356135	28	2.6	31	84	8	90	44	0	0	55	0.99
42356429--42356466	19	2.0	19	89	0	58	44	0	2	52	1.14
42358276--42358426	75	2.0	75	97	0	284	15	9	19	54	1.68
42362448--42362620	91	1.9	91	83	4	224	31	10	14	43	1.79
42368957--42369010	26	2.0	26	86	10	74	33	0	5	61	1.19
42372034--42372100	35	1.9	34	82	11	82	29	2	1	65	1.16
42372066--42372108	20	2.2	19	87	4	59	30	4	0	65	1.13
42372221--42372256	17	2.0	19	89	10	58	50	5	0	44	1.25
42374057--42374090	16	2.1	16	88	0	50	52	8	0	38	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42374573--42374618	20	2.2	20	84	3	56	23	4	6	65	1.35
42378360--42378478	60	2.0	60	93	0	202	32	0	13	53	1.40
42379030--42379070	22	1.9	22	85	5	57	48	0	0	51	1.00
42379366--42379398	17	1.9	17	93	0	57	18	0	3	78	0.87
42379611--42379690	33	2.4	33	91	0	124	31	7	8	52	1.60
42383410--42383438	14	2.0	15	93	6	51	44	6	6	41	1.58
42384800--42384866	9	7.4	9	80	6	82	41	25	8	23	1.83
42384799--42384866	27	2.5	27	85	4	93	42	25	8	23	1.82
42384886--42384935	20	2.5	20	80	9	57	26	4	10	60	1.47
42386052--42386206	21	7.3	21	68	6	89	43	17	23	15	1.87
42386052--42386207	42	3.7	42	79	7	172	43	17	23	15	1.87
42386052--42386207	84	1.8	85	82	6	201	43	17	23	15	1.87
42393717--42393754	17	2.2	17	90	0	58	18	10	10	60	1.57
42393798--42393853	16	3.4	16	85	9	69	30	1	3	64	1.21
42396692--42396744	26	2.0	26	85	7	72	33	3	0	62	1.13
42396712--42396791	20	4.3	18	75	17	74	38	0	2	58	1.11
42396710--42396802	38	2.4	40	76	18	99	37	0	3	59	1.14
42396713--42396797	18	4.5	19	76	8	84	37	0	3	58	1.15
42399782--42399825	21	2.1	21	83	8	54	34	2	13	50	1.55
42401760--42401800	19	2.3	19	88	12	61	14	7	2	75	1.12
42404986--42405036	25	1.9	27	88	11	79	35	3	17	43	1.68
42412221--42412254	17	2.0	17	94	0	59	44	50	0	5	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42427522--42427591	21	3.3	22	72	9	65	54	10	15	20	1.69
42438170--42438212	17	2.5	17	96	0	77	11	18	23	46	1.82
42448318--42448343	13	2.0	13	100	0	52	69	0	15	15	1.20
42449565--42450238	345	1.9	346	88	1	1001	29	21	23	25	1.99
42449565--42450245	87	7.9	87	89	1	965	29	21	23	25	1.99
42450449--42450550	44	2.3	44	77	9	109	28	24	22	24	1.99
42450535--42450656	44	2.8	44	80	5	131	27	17	22	31	1.96
42459327--42459391	32	2.0	32	82	5	78	44	6	10	38	1.64
42459509--42459584	4	18.5	4	91	2	98	31	1	19	47	1.58
42459474--42459602	30	4.3	29	73	10	107	41	3	13	41	1.59
42459482--42459560	34	2.3	34	86	0	104	39	2	13	44	1.58
42463729--42463818	43	2.1	43	85	4	119	27	30	17	24	1.97
42463792--42463881	43	2.1	43	82	12	105	20	16	20	43	1.88
42464167--42464302	66	2.1	66	90	2	211	14	26	17	41	1.88
42468925--42469280	9	39.1	9	78	6	351	31	3	17	47	1.64
42469334--42469386	12	4.6	12	83	9	74	30	0	16	52	1.44
42469334--42469403	24	3.0	24	79	12	74	32	2	15	48	1.60
42469496--42469552	9	6.7	9	76	9	57	43	1	12	42	1.52
42469498--42469529	16	2.0	16	93	0	55	40	0	12	46	1.42
42473759--42473799	22	1.9	21	85	14	57	56	24	0	19	1.42
42473825--42473912	22	3.9	22	72	21	74	48	26	1	23	1.58
42473823--42473904	16	5.3	16	69	16	57	50	24	1	24	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42474344--42474606	41	6.4	41	93	1	438	38	27	17	16	1.91
42475531--42475593	31	2.1	29	82	11	74	53	4	4	36	1.43
42495974--42496013	15	2.7	15	84	0	53	30	5	0	65	1.14
42497296--42497340	21	2.1	21	88	8	65	31	15	22	31	1.95
42498582--42498620	19	2.1	19	85	9	53	33	0	0	66	0.92
42501034--42501110	9	8.0	10	69	12	54	63	2	1	32	1.16
42501018--42501065	18	2.6	18	87	9	62	68	2	0	29	1.01
42501020--42501077	19	3.1	19	80	9	57	62	1	1	34	1.16
42501326--42501386	16	3.9	15	73	14	61	29	3	0	67	1.07
42501481--42501513	6	5.5	6	100	0	66	15	0	0	84	0.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185