genome.fa.s5.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  128  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39419220--39419275	24	2.3	24	87	3	76	62	0	0	37	0.95
39422535--39422559	11	2.3	11	100	0	50	36	0	20	44	1.52
39422987--39423028	22	1.9	22	95	0	75	38	4	11	45	1.62
39424304--39424337	17	1.9	17	88	5	50	35	2	0	61	1.11
39427657--39427707	22	2.3	22	83	10	59	49	1	0	49	1.12
39432332--39432402	18	3.9	19	71	22	64	49	0	0	50	1.00
39432338--39432387	16	2.9	16	78	16	55	48	0	0	52	1.00
39432336--39432402	35	1.9	35	84	6	91	47	0	0	52	1.00
39432357--39432402	19	2.7	16	78	18	56	47	0	0	52	1.00
39448860--39448886	12	2.2	12	100	0	54	48	0	0	51	1.00
39457896--39457931	2	18.0	2	100	0	72	50	0	50	0	1.00
39458421--39458449	13	2.2	13	100	0	58	58	0	13	27	1.36
39459197--39459247	25	2.0	25	96	0	93	1	13	7	76	1.09
39463714--39463817	45	2.3	45	91	0	163	32	16	12	38	1.86
39484049--39484219	88	1.9	88	85	2	236	28	19	25	25	1.99
39484536--39484785	44	5.8	44	74	12	151	28	19	23	28	1.98
39484664--39484806	45	3.2	44	84	5	164	29	20	25	24	1.99
39484732--39484824	45	2.1	45	85	0	123	32	22	24	20	1.98
39486903--39486932	10	3.1	10	90	9	53	50	0	0	50	1.00
39486900--39486933	9	3.7	9	92	7	59	52	0	0	47	1.00
39493830--39493898	29	2.3	30	73	9	70	40	8	7	43	1.63
39495769--39495814	24	2.0	22	83	8	56	39	10	2	47	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39496638--39496686	20	2.5	20	86	6	64	32	2	4	61	1.26
39503301--39503433	37	3.6	36	85	8	162	56	3	9	30	1.49
39503445--39503489	22	2.0	23	91	4	74	37	6	26	28	1.82
39504571--39504633	24	2.7	22	75	22	65	44	3	1	50	1.27
39510706--39510747	22	1.9	22	85	9	59	35	4	11	47	1.61
39513953--39513990	17	2.4	17	86	8	53	65	0	18	15	1.27
39517328--39517378	18	2.8	18	75	0	66	13	43	3	39	1.63
39520130--39520169	20	2.0	20	90	0	62	50	12	10	27	1.72
39520118--39520184	34	1.9	35	90	3	109	46	13	8	31	1.74
39520153--39520192	14	2.9	14	84	0	53	42	17	7	32	1.77
39526200--39526358	43	3.7	42	79	4	167	32	27	15	23	1.95
39526200--39526364	86	1.9	84	83	8	208	33	27	15	24	1.95
39527347--39527373	13	2.1	13	100	0	54	48	22	0	29	1.51
39541900--39541946	24	1.9	24	86	4	67	40	4	0	55	1.19
39545374--39545411	16	2.4	17	87	12	55	42	0	5	52	1.24
39547923--39548039	30	3.9	29	77	11	94	44	3	21	30	1.69
39547938--39548039	30	3.4	30	83	2	125	44	3	21	30	1.70
39548037--39548072	16	2.2	17	90	5	56	19	0	2	77	0.88
39548037--39548072	17	2.1	17	89	0	54	19	0	2	77	0.88
39548314--39549004	54	12.8	54	92	3	1126	37	17	15	30	1.91
39548963--39549449	73	6.8	72	91	3	707	33	18	17	30	1.94
39549432--39549466	17	2.1	17	88	0	52	65	5	11	17	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39549450--39549768	123	2.6	122	92	3	521	36	21	14	27	1.92
39558323--39558382	24	2.5	24	86	7	79	0	33	0	66	0.92
39558311--39558382	3	24.0	3	78	16	62	0	30	0	69	0.89
39558334--39558382	13	3.9	13	75	24	52	0	36	0	63	0.95
39558351--39558379	10	2.9	10	100	0	58	0	37	0	62	0.96
39558437--39558481	17	2.6	17	83	10	56	0	33	0	66	0.92
39558440--39558481	18	2.4	18	80	7	52	0	30	0	69	0.89
39558716--39558832	30	3.9	30	78	7	114	44	2	22	30	1.66
39558731--39558832	30	3.4	30	83	2	125	44	2	22	30	1.68
39558828--39558862	14	2.4	15	90	4	54	25	0	2	71	1.00
39559340--39559383	4	11.0	4	100	0	88	50	25	0	25	1.50
39559672--39559731	30	2.0	30	90	0	93	8	48	10	33	1.67
39564342--39564405	29	2.2	30	83	8	78	39	0	35	25	1.56
39564236--39564498	139	1.9	142	83	5	347	38	0	36	25	1.56
39566888--39566935	16	3.1	15	90	6	69	64	2	2	31	1.16
39566884--39566939	24	2.3	24	81	6	69	66	1	1	30	1.12
39566884--39566935	8	6.5	8	82	8	61	65	1	1	30	1.14
39567348--39567522	30	5.8	30	88	1	228	21	4	48	26	1.68
39568230--39568408	77	2.4	76	87	3	254	32	24	18	24	1.97
39568546--39568807	73	3.5	73	91	2	416	30	21	16	31	1.95
39568732--39568898	91	1.8	90	86	6	239	34	19	17	28	1.94
39568822--39568990	73	2.3	74	83	2	214	37	19	16	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39568657--39569177	177	3.1	165	81	11	609	36	19	16	27	1.93
39568970--39569019	14	3.6	14	81	7	57	64	4	12	20	1.43
39568999--39569226	79	3.0	76	83	8	270	35	19	16	28	1.94
39569042--39569406	71	4.8	74	77	13	273	35	18	15	30	1.92
39569122--39569475	159	2.2	154	83	9	430	34	18	16	31	1.93
39569535--39569802	77	3.6	77	83	5	327	32	21	15	31	1.94
39569122--39569877	417	1.8	416	81	7	956	35	19	15	29	1.92
39569667--39569957	159	1.8	159	88	3	451	34	22	15	28	1.94
39569808--39569949	72	2.0	73	92	1	241	39	23	14	21	1.91
39570103--39570533	72	5.8	72	86	6	443	35	19	14	30	1.91
39570103--39570533	147	2.9	144	82	6	488	35	19	14	30	1.91
39570465--39570761	115	2.6	115	96	1	535	35	24	15	24	1.94
39587155--39587358	93	2.3	91	83	8	247	34	20	10	34	1.86
39587473--39587522	9	5.6	8	86	13	55	68	0	4	28	1.08
39587473--39587522	19	2.7	19	82	11	61	68	0	4	28	1.08
39587729--39587811	36	2.2	38	85	6	107	37	1	2	59	1.19
39587862--39588068	89	2.3	88	79	5	213	35	8	16	39	1.79
39588288--39588319	2	16.0	2	100	0	64	50	0	0	50	1.00
39588846--39588891	22	2.1	22	88	8	67	58	0	4	36	1.18
39588903--39588952	17	2.9	17	85	11	66	60	0	4	36	1.16
39591618--39591691	14	5.2	14	76	9	69	29	13	1	55	1.47
39591648--39591711	29	2.1	29	85	5	83	29	14	0	56	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39591654--39591690	15	2.5	15	91	4	58	32	10	0	56	1.34
39591654--39591697	22	2.0	22	86	0	61	31	15	0	52	1.44
39598560--39598635	24	3.1	24	84	5	100	15	26	23	34	1.95
39601508--39601582	36	2.1	36	100	0	150	22	16	10	50	1.75
39602923--39603245	158	2.0	158	93	1	549	38	11	16	33	1.85
39604168--39604315	75	2.0	75	89	2	226	33	6	13	47	1.67
39606575--39606627	4	13.2	4	91	0	70	24	7	24	43	1.80
39606986--39607046	31	2.0	31	83	6	79	42	6	3	47	1.45
39609997--39610022	9	2.9	9	100	0	52	53	0	34	11	1.37
39610346--39610384	6	6.5	6	100	0	78	0	33	17	48	1.48
39610492--39610526	15	2.3	15	90	0	52	14	60	11	14	1.60
39614740--39614807	24	2.9	23	70	18	59	29	4	5	60	1.40
39615480--39615548	35	2.0	35	82	5	86	36	5	4	53	1.45
39620485--39620521	17	2.1	18	90	5	58	29	24	0	45	1.53
39623476--39623557	41	2.0	41	90	0	128	48	9	25	15	1.76
39625319--39625568	46	5.4	46	93	0	394	26	16	27	30	1.97
39625604--39626343	44	16.8	44	64	14	177	31	18	23	27	1.97
39625541--39626495	132	7.2	132	93	0	1570	31	18	22	26	1.97
39629254--39629295	20	2.2	19	87	8	59	50	9	7	33	1.62
39632985--39633019	12	2.9	12	82	0	52	54	14	5	25	1.62
39636153--39636190	3	12.7	3	100	0	76	31	0	0	68	0.90
39640520--39640548	3	9.7	3	100	0	58	31	0	0	68	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39646391--39646418	5	5.6	5	100	0	56	82	0	0	17	0.68
39648548--39648599	24	2.2	24	89	0	77	55	9	1	32	1.43
39649473--39649524	24	2.2	24	89	0	77	55	9	1	32	1.43
39652575--39652667	18	5.2	18	90	0	150	27	24	16	31	1.96
39673469--39673511	18	2.5	17	76	3	50	34	0	2	62	1.08
39674393--39674762	183	2.0	183	97	0	704	39	7	15	36	1.77
39676079--39676121	3	14.7	3	95	4	79	69	0	0	30	0.88
39677263--39677445	75	2.4	75	81	3	208	26	24	23	26	2.00
39682227--39682316	39	2.2	41	88	3	130	53	5	2	38	1.37
39683839--39683897	31	1.9	31	83	13	77	38	0	3	57	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185