genome.fa.s5.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  153  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46281614--46281675	23	2.8	22	87	4	81	32	1	8	58	1.37
46281609--46281683	23	3.2	23	80	10	64	32	2	9	56	1.45
46281774--46281804	3	10.3	3	92	0	53	32	0	0	67	0.91
46284912--46284954	21	2.1	21	86	4	61	48	23	2	25	1.62
46287777--46287811	9	3.9	9	84	0	52	60	5	0	34	1.21
46287748--46287821	30	2.6	29	83	10	89	56	5	2	35	1.36
46287777--46287813	18	2.1	18	94	0	65	59	5	0	35	1.20
46287774--46287821	11	4.7	11	76	23	52	58	6	0	35	1.23
46288002--46288035	12	2.9	11	87	12	50	61	0	2	35	1.11
46289211--46289267	22	2.6	21	89	8	87	12	3	54	29	1.54
46292186--46292224	12	3.2	13	85	7	55	38	5	0	56	1.22
46298839--46298918	39	2.1	39	95	0	142	30	18	28	22	1.98
46307893--46308261	44	8.5	44	73	12	212	31	20	21	26	1.98
46307896--46308223	46	7.5	46	73	13	182	31	21	21	25	1.98
46308264--46308420	83	1.9	83	81	0	188	35	22	18	24	1.96
46309030--46309107	39	2.0	39	100	0	156	33	7	5	53	1.51
46309853--46309940	3	29.3	3	75	8	72	29	7	2	60	1.37
46309858--46309940	12	6.6	12	81	8	85	30	8	2	59	1.40
46322502--46322870	44	8.5	44	73	12	212	31	20	21	26	1.98
46322505--46322832	46	7.5	46	73	13	182	31	21	21	25	1.98
46322873--46323029	83	1.9	83	81	0	188	35	22	18	24	1.96
46324422--46324512	3	30.3	3	76	8	78	29	7	2	60	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46324428--46324512	12	6.8	12	81	7	89	30	8	2	58	1.40
46328062--46328128	33	2.0	33	94	0	116	26	19	34	19	1.96
46337099--46337467	44	8.5	44	73	12	212	31	20	21	26	1.98
46337102--46337429	46	7.5	46	73	13	182	31	21	21	25	1.98
46337470--46337626	83	1.9	83	81	0	188	35	22	18	24	1.96
46347141--46347187	21	2.2	22	92	3	78	21	19	38	21	1.94
46350783--46350827	20	2.2	20	84	7	56	33	0	2	64	1.06
46351594--46351627	17	2.0	17	94	0	59	44	50	0	5	1.26
46353204--46353237	14	2.5	14	95	4	61	58	5	8	26	1.51
46355027--46355060	17	2.0	17	94	0	59	44	50	0	5	1.26
46356078--46356104	14	1.9	14	100	0	54	37	7	3	51	1.48
46358884--46358910	4	6.8	4	100	0	54	25	0	22	51	1.48
46361702--46361790	41	2.2	41	91	0	142	35	20	21	22	1.96
46361702--46361824	41	3.0	41	84	4	115	35	20	21	22	1.96
46362381--46362436	29	1.9	29	96	0	103	33	39	8	17	1.81
46362558--46362646	37	2.4	36	74	5	88	44	22	1	31	1.60
46362609--46362645	15	2.5	15	91	4	58	45	24	2	27	1.66
46363728--46363779	19	2.7	20	84	6	70	26	38	1	32	1.68
46366271--46366321	23	2.2	23	89	0	75	41	13	13	31	1.84
46377017--46377055	18	2.1	19	90	4	62	41	0	10	48	1.37
46377295--46377429	39	3.4	38	74	8	103	22	20	28	28	1.98
46377552--46377592	19	2.2	19	87	12	59	46	0	24	29	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46381515--46381739	120	1.9	120	98	0	432	36	9	17	36	1.83
46381738--46381783	13	3.8	13	72	21	55	34	13	15	36	1.86
46381742--46381783	22	1.9	22	100	0	84	35	11	14	38	1.83
46381757--46381916	83	1.9	83	100	0	320	40	13	14	31	1.84
46386288--46386335	21	2.3	21	100	0	96	22	18	58	0	1.39
46386670--46386733	22	2.9	22	92	0	110	20	10	21	46	1.81
46386714--46386850	43	3.2	43	84	0	184	21	17	22	37	1.94
46387466--46387505	21	1.9	21	85	10	55	50	0	12	37	1.41
46390097--46390127	16	1.9	16	93	0	53	58	6	0	35	1.24
46390243--46390316	29	2.5	29	86	4	94	50	12	14	22	1.77
46393187--46393234	26	1.9	24	83	8	60	20	2	8	68	1.26
46393215--46393255	21	2.0	21	85	9	57	21	0	7	70	1.11
46393551--46393590	16	2.5	16	100	0	80	42	5	27	25	1.75
46394538--46394582	22	2.0	22	95	0	81	48	6	4	40	1.49
46401418--46401513	26	3.9	25	75	13	83	56	10	5	28	1.54
46406921--46406954	18	1.9	18	88	5	52	58	2	2	35	1.28
46422027--46422122	48	2.0	48	95	0	174	21	32	13	32	1.92
46423796--46423847	17	2.9	17	80	11	50	57	15	9	17	1.64
46426821--46427264	103	4.3	103	96	0	773	19	20	29	30	1.97
46430265--46430289	13	1.9	13	100	0	50	8	56	0	36	1.29
46433608--46433851	41	6.0	41	89	0	355	29	18	28	24	1.98
46433618--46433886	41	6.6	41	87	0	198	30	17	27	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46433608--46433851	82	3.0	82	93	1	400	29	18	28	24	1.98
46433609--46433887	123	2.3	123	83	2	337	30	17	27	24	1.98
46435693--46435779	33	2.7	33	80	8	97	48	19	8	24	1.75
46435759--46435825	34	1.9	35	87	3	100	46	11	8	32	1.72
46437279--46437342	24	2.5	25	85	12	85	39	10	1	48	1.48
46437482--46437587	20	5.4	19	73	14	90	69	0	29	0	0.94
46437462--46437589	40	3.1	42	85	12	192	71	0	28	0	0.92
46437462--46437626	40	4.1	40	83	11	187	70	0	29	0	0.92
46437480--46437624	28	5.3	28	69	22	78	69	0	29	0	0.93
46437462--46437627	80	2.0	81	85	12	225	70	0	28	0	0.92
46437470--46437623	35	4.2	36	78	16	140	69	0	29	0	0.93
46440707--46440749	18	2.4	17	81	11	50	16	44	6	32	1.74
46441598--46441635	3	12.7	3	100	0	76	68	31	0	0	0.90
46441695--46441733	20	2.0	21	85	10	55	66	10	0	23	1.22
46441874--46441931	27	2.1	27	90	0	89	15	25	27	31	1.96
46441980--46442021	20	2.1	20	100	0	84	54	0	9	35	1.33
46453325--46453370	24	2.0	24	86	4	67	45	0	4	50	1.21
46453672--46453738	33	2.0	33	97	0	125	34	14	16	34	1.90
46453547--46453863	158	2.0	158	87	3	451	32	17	21	29	1.96
46453705--46454047	125	2.8	122	83	9	414	29	17	22	30	1.96
46457220--46457279	29	2.0	30	87	3	86	23	1	28	46	1.62
46457220--46457265	14	3.1	14	81	6	56	23	0	30	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46457248--46458409	22	53.6	22	71	15	353	23	0	27	49	1.56
46457248--46457482	130	1.8	130	89	3	375	20	0	26	52	1.50
46457400--46457432	15	2.1	16	88	5	50	21	0	24	54	1.45
46457248--46457516	130	2.1	129	86	6	366	21	0	26	52	1.50
46457547--46457653	53	2.0	52	83	5	135	20	0	28	50	1.48
46457643--46457711	29	2.4	29	85	0	84	23	1	24	50	1.57
46457658--46457704	15	3.2	15	75	6	51	27	2	21	48	1.61
46457665--46457733	7	9.6	7	75	12	59	24	0	24	50	1.49
46457674--46457791	21	5.6	20	80	15	96	27	0	24	47	1.58
46457859--46457917	7	8.4	7	75	12	50	20	0	23	55	1.43
46457858--46458045	21	8.9	21	78	8	166	19	0	28	51	1.47
46457952--46458037	7	12.0	7	72	14	59	16	0	32	51	1.45
46457965--46458022	13	4.2	14	75	16	50	18	0	29	51	1.47
46457922--46458407	21	22.8	21	71	9	139	22	0	27	48	1.56
46458138--46458170	15	2.1	16	88	5	50	18	0	24	57	1.40
46458146--46458583	43	10.2	43	72	10	235	19	0	30	49	1.54
46458239--46458394	65	2.4	65	78	5	165	17	1	29	51	1.54
46458492--46458563	21	3.4	21	84	3	99	22	0	30	47	1.52
46458549--46458609	7	8.7	7	74	5	52	8	0	47	44	1.33
46458548--46458609	14	4.4	14	80	13	74	9	0	46	43	1.36
46458614--46458653	21	1.9	21	89	0	62	27	0	22	50	1.50
46462604--46462654	18	2.8	19	79	11	70	0	17	15	66	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46462676--46462700	10	2.5	10	100	0	50	0	0	8	92	0.40
46462666--46462726	29	2.1	29	81	6	70	4	9	8	77	1.13
46463275--46463337	31	2.0	32	96	3	119	42	15	9	31	1.79
46464862--46464916	11	4.8	12	86	6	71	45	1	30	21	1.62
46464865--46464924	22	2.6	22	82	15	77	43	1	31	23	1.64
46467850--46467882	10	3.3	10	87	12	50	9	18	0	72	1.10
46469751--46469793	13	3.3	13	84	9	52	58	0	4	37	1.19
46481470--46481546	38	2.0	38	94	0	136	31	16	3	48	1.65
46486853--46486930	29	2.6	29	83	4	93	47	14	14	24	1.80
46486878--46486951	29	2.5	29	86	4	94	50	16	13	20	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185