genome.fa.s5.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  75  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23572203--23572312	42	2.6	43	79	4	125	33	20	17	28	1.95
23579657--23579729	23	3.2	23	84	0	101	28	24	21	24	1.99
23582829--23582872	18	2.4	19	85	11	65	25	2	45	27	1.65
23592984--23593018	3	11.7	3	100	0	70	65	0	0	34	0.93
23603107--23603139	16	2.1	16	100	0	66	36	6	36	21	1.78
23603372--23603406	18	2.0	17	88	5	52	54	0	0	45	0.99
23607272--23607308	3	13.0	3	83	11	51	35	2	62	0	1.10
23607271--23607308	13	2.7	14	76	15	51	36	2	60	0	1.11
23608232--23608271	21	1.9	21	90	10	64	40	2	5	52	1.37
23613042--23613099	27	2.1	27	83	3	71	31	20	13	34	1.92
23613008--23613099	28	3.3	27	74	6	76	30	22	13	33	1.92
23613053--23613110	27	2.1	27	84	6	73	31	20	8	39	1.83
23615930--23616002	36	2.0	36	100	0	146	34	19	10	35	1.87
23617393--23617473	21	3.9	21	85	0	108	18	33	18	29	1.95
23620262--23620342	42	1.9	43	87	7	121	66	0	3	29	1.09
23626875--23626900	3	8.7	3	100	0	52	0	30	0	69	0.89
23629967--23630169	41	4.6	41	80	14	226	27	19	28	25	1.99
23630071--23630095	12	2.1	12	100	0	50	24	16	24	36	1.94
23630030--23630130	53	1.9	53	97	0	193	28	17	25	27	1.98
23629989--23630169	94	1.9	95	90	1	292	27	18	27	26	1.98
23630883--23631009	39	3.3	39	88	3	193	34	2	0	62	1.08
23630935--23631000	11	6.4	11	75	21	63	37	3	0	59	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23630887--23630968	30	2.8	30	78	10	80	35	2	0	62	1.09
23633648--23633705	27	2.1	27	81	6	64	58	3	5	32	1.37
23635082--23635641	132	4.2	132	92	1	854	24	24	20	31	1.98
23635325--23635617	44	6.7	44	67	13	165	23	25	19	31	1.98
23646917--23647113	98	2.0	98	97	0	376	37	24	9	27	1.87
23650370--23650398	6	4.8	6	100	0	58	82	0	0	17	0.66
23658141--23658171	3	10.3	3	100	0	62	35	32	0	32	1.58
23662512--23662549	14	3.0	13	88	11	53	5	2	7	84	0.86
23662512--23662563	22	2.4	21	81	12	61	9	1	5	82	0.90
23662544--23662588	23	1.9	23	90	4	72	24	0	6	68	1.13
23662713--23663721	362	2.8	363	88	4	1451	28	12	13	45	1.80
23672115--23672140	13	2.0	13	100	0	52	53	7	0	38	1.30
23675268--23675308	20	2.0	20	100	0	82	36	24	19	19	1.95
23676144--23676203	25	2.4	25	75	5	68	38	18	25	18	1.93
23677782--23677823	20	2.1	20	86	0	57	47	0	7	45	1.30
23683257--23683316	22	2.7	23	73	19	63	66	6	0	26	1.16
23683266--23683299	4	8.0	4	90	9	50	73	2	0	23	0.97
23684653--23684705	23	2.4	22	76	20	56	9	18	1	69	1.25
23693398--23693639	50	4.7	50	80	4	218	23	25	21	29	1.99
23708127--23708183	22	2.6	23	83	8	73	43	19	22	14	1.86
23709203--23709249	24	2.0	24	86	0	67	38	8	6	46	1.60
23709788--23709819	16	2.0	16	100	0	64	31	18	12	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23712226--23712354	2	64.5	2	100	0	258	0	50	0	49	1.00
23714641--23714728	27	3.3	27	91	0	140	43	9	10	37	1.70
23716064--23716104	19	2.1	19	86	4	55	78	0	14	7	0.96
23726320--23727262	471	2.0	471	100	0	1886	35	16	16	32	1.91
23727280--23727347	16	4.2	16	90	0	109	26	2	33	36	1.72
23727583--23727617	18	2.0	17	88	5	52	54	0	0	45	0.99
23727703--23727737	18	2.0	17	88	5	52	54	0	0	45	0.99
23727566--23727881	120	2.6	120	97	0	587	49	5	1	43	1.36
23727802--23727853	15	3.6	15	80	12	56	53	1	0	44	1.11
23733227--23733261	17	2.0	18	88	5	54	42	5	2	48	1.41
23733270--23733306	17	2.3	15	90	9	56	51	0	2	45	1.15
23734651--23734688	19	2.0	19	85	10	51	42	0	15	42	1.47
23734944--23734975	13	2.5	13	100	0	64	40	6	6	46	1.54
23735545--23735609	23	3.0	22	80	15	89	16	21	23	38	1.93
23737836--23737870	17	2.0	18	88	5	54	42	5	2	48	1.41
23737879--23737915	17	2.3	15	90	9	56	51	0	2	45	1.15
23739260--23739297	19	2.0	19	85	10	51	42	0	15	42	1.47
23739553--23739584	13	2.5	13	100	0	64	40	6	6	46	1.54
23740154--23740218	23	3.0	22	80	15	89	16	21	23	38	1.93
23745485--23745549	23	3.0	22	82	8	80	40	23	20	16	1.92
23746477--23746525	9	5.4	9	80	9	55	4	16	4	75	1.11
23746477--23746525	18	2.7	18	84	6	64	4	16	4	75	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23746749--23746810	24	2.6	24	94	0	106	35	20	4	38	1.74
23749200--23749340	46	3.1	46	89	1	212	30	23	9	36	1.87
23750587--23750632	17	2.8	17	83	3	58	56	13	0	30	1.37
23751175--23751221	21	2.2	21	88	0	67	2	44	19	34	1.62
23752323--23752363	21	2.0	21	85	9	57	31	2	24	41	1.68
23752851--23752920	26	2.7	26	84	2	79	17	25	20	37	1.94
23753026--23753085	25	2.4	25	85	0	84	23	31	18	26	1.97
23764778--23764867	42	2.1	42	83	0	108	20	34	23	22	1.97
23765760--23766036	43	6.4	43	88	2	396	26	33	18	21	1.97
23768960--23769006	15	3.3	15	79	8	53	40	34	0	25	1.56
23769395--23769659	85	3.1	85	89	2	399	27	32	17	22	1.97
23769399--23769659	42	6.1	43	86	2	366	26	32	18	22	1.97
23773463--23773522	10	5.8	10	76	11	50	46	5	1	46	1.34
23774234--23774273	21	1.9	21	89	0	62	42	37	0	20	1.52
23774261--23774321	7	8.6	7	81	3	68	49	31	0	19	1.49
23774265--23774316	15	3.6	15	84	7	72	46	36	0	17	1.48
23774446--23774579	66	2.0	66	98	0	259	41	7	6	44	1.59
23774699--23774977	41	6.8	41	91	2	436	29	28	24	17	1.98
23775041--23775150	40	2.8	40	83	9	145	20	23	22	32	1.98
23775515--23775939	117	3.7	113	84	3	539	25	25	22	26	2.00
23781228--23781316	45	2.0	45	93	4	153	29	24	25	20	1.99
23782218--23782272	9	6.2	9	91	2	76	23	10	23	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23782432--23782456	12	2.1	12	100	0	50	16	24	36	24	1.94
23784043--23784101	30	2.0	30	86	0	82	37	8	25	28	1.85
23784284--23784322	18	2.2	17	86	13	53	33	0	20	46	1.51
23784551--23784692	23	6.2	23	95	0	248	20	21	28	30	1.98
23786238--23786331	30	3.0	30	79	14	118	43	18	2	36	1.62
23786238--23786332	33	3.0	33	86	7	126	43	18	2	35	1.63
23796218--23796288	35	2.0	35	100	0	142	42	25	5	26	1.77
23808214--23808361	2	74.0	2	100	0	296	50	50	0	0	1.00
23809825--23809893	29	2.4	29	77	0	75	33	27	14	24	1.94
23810015--23810093	42	1.9	40	82	5	95	39	18	10	31	1.84
23814034--23814210	64	2.8	64	87	10	249	31	8	17	42	1.79
23814330--23814487	41	3.9	41	85	6	187	20	18	27	33	1.96
23815152--23815186	15	2.3	15	90	9	54	25	0	22	51	1.48
23820930--23821106	64	2.8	64	87	10	249	31	8	17	42	1.79
23821226--23821383	41	3.9	41	85	5	185	20	18	27	33	1.96
23822048--23822083	14	2.4	16	86	13	58	27	0	22	50	1.50
23830543--23830610	34	2.0	34	97	0	127	41	22	11	25	1.87
23836831--23836909	41	2.0	40	85	9	108	63	5	0	31	1.16
23837576--23837611	17	2.1	17	89	0	54	52	0	0	47	1.00
23867389--23867432	21	2.2	21	88	11	67	36	0	20	43	1.52
23870709--23870744	16	2.2	16	100	0	72	22	0	25	52	1.47
23871560--23871704	55	2.6	55	91	1	236	24	9	15	50	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23880094--23880290	98	2.0	98	97	0	376	36	26	11	26	1.90
23882504--23882653	38	3.9	37	69	13	113	21	20	16	42	1.90
23882521--23882715	79	2.5	79	86	0	248	22	21	16	40	1.91
23883919--23883946	7	4.0	7	100	0	56	14	0	0	85	0.59
23901825--23901858	16	2.2	16	89	5	52	14	2	0	82	0.79
23903789--23903822	16	2.2	16	89	5	52	14	2	0	82	0.79
23903950--23903975	11	2.4	11	100	0	52	15	0	0	84	0.62
23907136--23907165	4	7.5	4	100	0	60	50	23	0	26	1.50
23910264--23910308	22	2.0	23	87	8	67	51	4	8	35	1.54
23910927--23910990	13	4.9	13	70	12	51	34	9	21	34	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185