genome.fa.s5.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  164  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49110001--49110048	24	2.0	24	84	12	62	29	4	0	66	1.10
49116894--49117006	37	2.8	40	76	10	124	23	18	23	33	1.97
49117220--49117248	14	2.0	15	93	6	51	27	3	20	48	1.66
49126418--49126458	21	2.0	21	90	0	64	19	29	21	29	1.98
49131334--49131359	5	5.2	5	100	0	52	19	80	0	0	0.71
49133824--49133858	18	2.0	17	88	5	52	45	0	0	54	0.99
49133817--49133998	59	3.0	61	68	15	178	44	0	4	50	1.28
49134211--49134243	16	2.1	16	100	0	66	21	36	6	36	1.78
49134494--49134587	48	2.0	48	97	0	179	46	4	4	44	1.42
49150534--49150559	6	4.3	6	100	0	52	50	15	19	15	1.79
49153311--49153613	157	1.9	157	94	1	536	33	24	15	27	1.95
49157583--49157767	46	4.0	46	91	0	298	35	8	26	29	1.86
49163435--49163637	97	2.1	97	85	3	273	48	2	4	44	1.36
49168293--49168332	11	3.6	11	82	0	53	22	15	5	57	1.57
49168370--49168432	30	2.1	30	96	0	117	23	3	15	57	1.53
49169661--49169712	25	2.1	25	86	10	72	26	0	1	71	0.97
49170434--49170466	16	2.1	16	100	0	66	6	18	30	45	1.73
49170577--49170615	15	2.7	15	88	4	53	58	28	5	7	1.47
49170828--49170894	21	3.4	19	77	16	64	2	44	19	32	1.66
49174282--49174327	19	2.3	21	92	7	78	19	4	2	73	1.10
49178923--49178995	38	1.9	37	86	8	103	31	21	1	45	1.61
49179125--49179177	23	2.3	23	93	0	97	32	26	20	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49179626--49179684	30	2.0	30	86	0	82	28	25	5	40	1.77
49180937--49181133	95	2.1	93	91	3	315	35	3	7	54	1.45
49182892--49182971	10	7.8	11	73	19	59	57	0	2	40	1.12
49182893--49182961	9	7.1	10	75	21	58	60	0	1	37	1.06
49182909--49182961	10	5.3	10	78	17	65	66	0	1	32	1.03
49182878--49182961	40	2.1	40	91	4	134	61	1	2	34	1.16
49182895--49182971	31	2.6	31	86	13	101	58	0	2	38	1.12
49184665--49185034	126	2.9	126	85	2	467	28	16	16	38	1.91
49184665--49185034	127	2.9	125	84	4	440	28	16	16	38	1.91
49185044--49185133	34	2.6	34	81	10	112	43	17	2	36	1.62
49189421--49189507	37	2.4	37	86	0	111	25	14	19	40	1.90
49195663--49195692	6	5.0	6	100	0	60	0	0	33	66	0.92
49196265--49196292	6	4.7	6	100	0	56	0	28	17	53	1.44
49202380--49202424	22	2.0	22	86	0	63	22	26	2	48	1.62
49202382--49202424	11	3.8	11	81	3	50	23	25	2	48	1.62
49204213--49204255	18	2.4	18	88	0	59	18	27	9	44	1.80
49204679--49204787	49	2.2	49	95	0	191	44	3	5	46	1.44
49207991--49208403	125	3.3	125	93	0	700	30	20	17	31	1.95
49220204--49220264	30	2.0	30	96	0	113	31	22	8	37	1.84
49223044--49223483	128	3.5	125	85	2	594	31	17	22	28	1.96
49226552--49226619	22	3.0	22	82	4	91	23	1	25	50	1.58
49226556--49226619	23	2.9	21	80	11	74	23	1	25	50	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49226595--49226648	14	3.8	14	80	2	54	27	0	27	44	1.55
49226652--49226818	28	6.2	26	74	16	135	24	0	29	46	1.53
49226547--49226761	78	2.8	77	78	14	221	24	0	28	46	1.57
49226677--49226726	15	3.5	15	69	20	52	22	0	34	44	1.53
49226662--49226818	50	3.0	50	78	15	181	24	0	29	45	1.53
49226662--49226747	22	3.6	22	80	17	100	23	0	30	46	1.52
49226662--49226825	57	3.0	57	80	14	177	24	0	29	45	1.53
49226758--49226801	22	2.0	22	86	8	63	29	0	25	45	1.54
49227058--49227100	21	2.0	21	90	0	68	4	27	39	27	1.76
49228716--49228813	51	1.9	51	83	6	128	40	4	28	26	1.74
49228794--49228826	11	2.8	12	90	9	59	42	6	27	24	1.78
49232306--49232361	6	9.3	6	100	0	112	67	0	0	32	0.91
49242606--49244272	834	2.0	833	100	0	3325	33	13	16	35	1.88
49245795--49245839	22	2.1	21	88	12	65	24	2	2	71	1.09
49248845--49248993	50	3.0	50	86	3	183	20	30	23	26	1.98
49248935--49249061	67	1.9	67	93	0	218	18	33	21	26	1.97
49249002--49249270	50	5.2	50	83	9	351	20	31	21	26	1.98
49248884--49251085	117	18.5	117	92	5	3680	18	32	22	25	1.97
49249211--49249337	67	1.9	67	95	0	227	18	33	22	26	1.96
49249278--49249387	50	2.2	50	95	0	193	18	33	22	25	1.96
49249328--49249454	67	1.9	67	95	0	227	18	33	22	26	1.96
49249395--49249504	50	2.2	50	95	0	193	18	33	22	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49249445--49249571	67	1.9	67	95	0	227	18	33	22	26	1.96
49249512--49249621	50	2.2	50	95	0	193	18	33	22	25	1.96
49249562--49249688	67	1.9	67	95	0	227	18	33	22	26	1.96
49249629--49249738	50	2.2	50	95	0	193	18	33	22	25	1.96
49249679--49249805	67	1.9	67	95	0	227	18	33	22	26	1.96
49249746--49249855	50	2.2	50	95	0	193	18	33	22	25	1.96
49249796--49249922	67	1.9	67	95	0	227	18	33	22	26	1.96
49249863--49249972	50	2.2	50	95	0	193	18	33	22	25	1.96
49249913--49250039	67	1.9	67	95	0	227	18	33	22	26	1.96
49249980--49250089	50	2.2	50	95	0	193	18	33	22	25	1.96
49250030--49250156	67	1.9	67	95	0	227	18	33	22	26	1.96
49250097--49250206	50	2.2	50	95	0	193	18	33	22	25	1.96
49250147--49250273	67	1.9	67	95	0	227	18	33	22	26	1.96
49250214--49250323	50	2.2	50	95	0	193	18	33	22	25	1.96
49250264--49250390	67	1.9	67	95	0	227	18	33	22	26	1.96
49250331--49250440	50	2.2	50	95	0	193	18	33	22	25	1.96
49250381--49250507	67	1.9	67	95	0	227	18	33	22	26	1.96
49250448--49250557	50	2.2	50	95	0	193	18	33	22	25	1.96
49250498--49250624	67	1.9	67	95	0	227	18	33	22	26	1.96
49250565--49250674	50	2.2	50	95	0	193	18	33	22	25	1.96
49250615--49250741	67	1.9	67	95	0	227	18	33	22	26	1.96
49250682--49250791	50	2.2	50	95	0	193	18	33	22	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49250732--49250858	67	1.9	67	95	0	227	18	33	22	26	1.96
49250799--49250908	50	2.2	50	95	0	193	18	33	22	25	1.96
49250849--49250975	67	1.9	67	95	0	227	18	33	22	26	1.96
49250916--49251025	50	2.2	50	95	0	193	18	33	22	25	1.96
49251422--49251479	30	1.9	30	82	6	73	29	24	10	36	1.88
49251892--49251929	18	2.1	18	100	0	76	63	0	21	15	1.31
49252498--49252587	21	4.3	21	81	2	110	43	15	24	16	1.87
49252460--49252569	42	2.6	42	86	2	141	42	14	23	19	1.88
49252472--49252587	42	2.7	43	84	4	146	43	15	24	17	1.87
49253661--49253738	34	2.2	36	93	4	133	41	17	2	38	1.64
49255323--49255362	21	1.9	21	94	0	71	65	0	2	32	1.06
49255316--49255363	21	2.3	21	85	0	69	64	0	2	33	1.05
49282199--49282235	12	3.1	12	92	0	56	8	18	40	32	1.80
49282201--49282235	18	1.9	18	88	0	52	5	17	42	34	1.73
49292728--49292806	31	2.5	31	100	0	158	50	11	12	25	1.73
49303041--49303104	30	2.1	30	82	5	76	35	6	9	48	1.61
49304511--49304581	19	3.7	20	77	19	71	32	1	7	59	1.33
49304539--49304582	21	2.2	20	88	8	63	29	2	4	63	1.26
49304479--49304582	19	5.2	19	70	21	70	36	0	4	57	1.26
49304539--49304583	20	2.2	21	88	4	65	28	2	4	64	1.25
49309124--49309157	17	2.0	17	94	0	59	55	5	26	11	1.58
49311048--49311102	27	2.0	27	100	0	110	36	10	21	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49311163--49311211	22	2.2	22	96	0	89	63	2	18	16	1.41
49311361--49311463	51	2.0	51	94	0	179	34	8	18	37	1.82
49311974--49312013	21	1.9	21	84	0	53	42	2	12	42	1.56
49313195--49313330	42	3.2	42	81	0	146	16	23	18	41	1.89
49313195--49313301	21	5.1	21	68	4	81	17	24	16	41	1.90
49326079--49326127	19	2.5	19	87	9	64	36	0	8	55	1.30
49329098--49329157	18	3.3	17	77	9	57	70	1	5	23	1.16
49329088--49329158	19	3.7	19	69	19	58	70	1	4	23	1.13
49329397--49329467	27	2.7	28	76	10	78	22	2	5	69	1.23
49329474--49329527	28	1.9	28	82	14	67	31	3	1	62	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185