genome.fa.s5.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  154  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46487755--46487788	17	2.0	17	100	0	68	58	0	5	35	1.22
46502552--46502589	14	2.7	15	88	11	55	44	15	2	36	1.61
46514243--46514268	8	3.2	8	100	0	52	11	50	0	38	1.39
46516940--46516968	13	2.1	14	93	6	51	31	0	0	68	0.89
46517168--46517198	14	2.2	14	100	0	62	45	0	0	54	0.99
46519433--46519467	15	2.2	16	95	5	63	31	2	0	65	1.07
46522367--46522403	3	12.3	3	100	0	74	0	32	0	67	0.91
46529458--46529508	21	2.4	21	83	6	59	37	1	17	43	1.61
46529956--46530023	24	2.9	24	86	2	84	17	26	23	32	1.97
46532474--46532612	46	3.0	46	91	0	224	36	10	23	28	1.89
46541745--46541841	49	2.0	48	87	2	140	42	21	14	21	1.88
46543115--46543166	22	2.3	24	83	12	74	67	5	1	25	1.23
46543513--46543580	32	2.2	29	75	17	57	48	5	4	41	1.47
46545328--46545377	25	2.0	24	81	14	57	66	0	4	30	1.10
46547847--46547881	16	2.2	16	89	0	52	40	2	31	25	1.70
46548236--46548301	29	2.2	29	82	15	73	27	3	6	63	1.32
46548249--46548312	29	2.2	29	83	10	78	31	3	4	60	1.32
46549292--46549334	23	1.9	23	85	4	61	39	6	4	48	1.51
46549876--46550070	98	2.0	98	93	2	338	36	24	10	28	1.88
46550744--46550793	26	2.0	26	88	4	75	56	4	8	32	1.47
46551549--46551680	19	6.8	19	91	3	219	36	15	10	37	1.82
46551542--46551679	59	2.4	59	91	4	221	36	14	10	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46551865--46552411	44	12.7	43	70	12	252	28	22	20	28	1.99
46552034--46552325	89	3.3	89	76	11	357	26	25	21	27	1.99
46551985--46552404	174	2.4	174	86	4	616	27	23	20	28	1.99
46552396--46552785	132	3.0	132	92	2	667	23	25	21	29	1.99
46552620--46552710	44	2.1	44	80	0	101	21	27	21	28	1.99
46554063--46554105	1	43.0	1	80	0	50	2	0	6	90	0.52
46554063--46554105	14	3.3	13	87	9	61	2	0	6	90	0.52
46559889--46560083	98	2.0	98	92	0	327	36	23	10	29	1.89
46561546--46561632	19	4.5	19	94	5	156	36	14	10	37	1.81
46561539--46561632	40	2.5	38	90	10	156	37	14	9	38	1.79
46562149--46562224	37	2.0	40	84	7	104	57	3	6	31	1.42
46569093--46569300	104	2.0	104	97	0	389	35	21	13	29	1.92
46569755--46569786	13	2.5	13	94	0	55	31	0	12	56	1.37
46569881--46570065	50	3.7	50	99	0	361	26	23	32	16	1.96
46577172--46577198	14	1.9	14	100	0	54	88	0	11	0	0.50
46577455--46577483	2	14.5	2	100	0	58	51	48	0	0	1.00
46578199--46578326	59	2.2	60	82	2	152	42	6	16	35	1.73
46585773--46585807	13	2.7	13	87	12	54	8	2	2	85	0.79
46588208--46588292	40	2.1	40	82	8	102	36	20	21	22	1.95
46588608--46588668	22	2.9	21	76	11	61	19	0	37	42	1.52
46588608--46588742	7	17.9	7	69	14	72	15	0	38	45	1.46
46588620--46588742	15	8.0	15	70	13	72	14	0	40	44	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46588613--46588683	36	1.9	38	85	5	101	18	0	39	42	1.50
46589254--46589343	43	2.1	43	87	4	128	26	14	27	31	1.95
46589260--46589358	43	2.3	43	80	3	110	25	17	26	31	1.97
46589835--46589863	5	5.8	5	100	0	58	37	0	0	62	0.96
46596748--46596802	17	3.3	16	82	7	58	38	1	7	52	1.40
46596754--46596802	17	2.8	18	84	9	66	36	2	8	53	1.43
46599629--46599657	10	2.7	11	94	5	51	31	31	0	37	1.58
46600739--46600770	11	2.9	11	95	0	55	40	0	31	28	1.57
46601275--46601352	30	2.7	30	92	5	126	52	5	3	38	1.42
46601366--46601427	32	1.9	32	100	0	124	37	14	3	45	1.61
46602013--46602072	28	2.1	28	81	6	68	41	1	1	55	1.20
46602654--46602701	19	2.5	19	81	18	55	58	0	8	33	1.28
46605941--46605997	23	2.5	23	88	2	80	52	1	1	43	1.21
46605973--46606012	16	2.5	16	87	0	53	47	5	7	40	1.54
46606085--46606112	9	3.1	9	100	0	56	32	0	10	57	1.33
46606002--46606210	68	3.1	68	95	1	359	41	4	9	45	1.55
46606277--46606320	24	1.9	24	90	9	74	61	2	0	36	1.09
46607551--46607604	16	3.0	19	73	15	60	35	0	18	46	1.50
46608811--46608995	46	4.0	46	87	2	255	36	9	23	30	1.86
46610718--46610848	39	3.4	38	77	7	120	37	1	0	61	1.06
46610771--46610852	11	7.9	11	77	22	97	45	0	0	54	0.99
46610763--46610852	29	3.0	29	87	8	119	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46610782--46610817	18	2.0	18	100	0	72	44	0	0	55	0.99
46610807--46610832	13	2.0	13	100	0	52	46	0	0	53	1.00
46614721--46614788	30	2.2	31	84	2	84	26	17	7	48	1.73
46614943--46614987	23	2.0	23	95	0	81	28	8	22	40	1.84
46616056--46616103	20	2.4	20	92	0	78	43	0	20	35	1.52
46616336--46616392	23	2.5	23	80	8	64	38	1	3	56	1.27
46616336--46616392	22	2.6	23	81	13	66	38	1	3	56	1.27
46618386--46618422	9	4.1	9	92	0	65	29	10	13	45	1.77
46627736--46627792	29	2.0	29	82	6	71	61	0	5	33	1.18
46632850--46632890	21	2.0	21	90	0	64	56	7	21	14	1.63
46635534--46635580	12	3.9	12	78	8	51	53	0	0	46	1.00
46645650--46645731	26	3.2	25	70	14	60	43	1	6	48	1.35
46648130--46648155	13	2.0	13	100	0	52	61	30	0	7	1.24
46652235--46652264	7	4.3	7	95	0	51	46	30	0	23	1.52
46658507--46658531	6	4.2	6	100	0	50	0	16	0	84	0.63
46661448--46661491	19	2.1	21	88	12	65	52	0	0	47	1.00
46661459--46661566	57	1.9	57	83	11	141	52	0	0	46	1.06
46661446--46661571	19	6.8	19	63	27	56	49	0	0	50	1.06
46663378--46663432	21	2.6	21	73	0	56	12	23	40	23	1.89
46663557--46663601	22	2.0	22	82	0	54	13	35	22	28	1.92
46666751--46666790	20	2.0	20	90	0	62	27	10	12	50	1.72
46666736--46666802	34	1.9	35	90	3	109	31	8	13	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46666730--46666806	14	5.0	15	71	20	52	33	9	14	42	1.77
46667506--46667640	48	2.8	47	79	3	137	37	15	21	25	1.93
46675279--46675312	7	4.7	7	85	7	50	17	0	2	79	0.86
46675279--46675312	15	2.3	15	90	5	52	17	0	2	79	0.86
46676910--46676956	19	2.6	18	83	6	58	29	2	2	65	1.15
46676924--46676962	18	2.1	19	85	4	53	25	2	2	69	1.14
46676924--46676963	19	2.1	19	86	9	55	25	2	2	70	1.13
46679068--46679098	5	6.2	5	100	0	62	58	41	0	0	0.98
46684926--46684983	28	2.1	28	100	0	116	62	10	10	17	1.54
46685294--46685348	26	2.2	25	83	9	67	50	1	1	45	1.22
46692809--46692892	27	3.0	28	80	13	91	22	3	1	72	1.07
46692799--46692878	5	15.6	5	75	17	58	20	2	1	76	0.97
46692804--46692888	32	2.7	32	83	10	102	21	3	1	74	1.04
46693819--46694204	196	2.0	196	98	0	754	27	14	20	37	1.92
46694874--46694908	15	2.4	15	90	4	54	48	0	8	42	1.33
46697073--46697133	26	2.4	26	88	2	88	31	11	13	44	1.79
46697406--46697434	9	3.0	10	90	10	51	20	20	0	58	1.39
46699435--46699486	19	2.7	20	85	8	63	32	3	0	63	1.12
46700966--46701014	23	2.2	22	82	7	55	30	2	2	65	1.15
46701665--46701707	23	1.9	23	85	4	61	65	2	2	30	1.18
46709303--46709478	90	1.9	92	84	4	239	37	18	7	36	1.80
46709414--46709546	69	2.0	68	83	3	169	33	21	8	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46709414--46709557	68	2.1	68	82	5	166	34	22	7	36	1.83
46709163--46709861	257	2.8	254	87	4	979	35	18	7	38	1.79
46709479--46709733	93	2.7	94	84	4	329	35	19	7	38	1.80
46710272--46710311	20	2.0	20	85	4	55	32	2	2	62	1.22
46710444--46710524	35	2.3	35	91	0	135	41	14	9	33	1.79
46710610--46710639	11	2.7	11	100	0	60	0	16	0	83	0.65
46710984--46711047	29	2.1	29	83	11	76	51	6	12	29	1.64
46720513--46720553	21	1.9	22	85	5	57	41	0	7	51	1.30
46723134--46723178	16	2.8	16	89	0	63	40	4	24	31	1.75
46739605--46739641	16	2.3	17	81	13	51	54	0	5	40	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185