genome.fa.s5.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  157  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47446509--47446534	3	8.7	3	100	0	52	0	34	0	65	0.93
47457113--47457179	21	3.2	20	73	12	55	16	16	16	50	1.78
47457113--47457261	42	3.5	42	81	3	140	16	19	17	46	1.84
47457158--47457265	21	5.1	21	70	0	81	15	21	18	44	1.87
47462457--47462512	25	2.2	26	78	9	62	35	19	23	21	1.96
47462468--47462539	25	2.9	25	85	0	90	33	16	29	20	1.95
47464256--47464319	25	2.6	25	87	0	83	37	20	23	18	1.94
47466397--47466468	27	2.7	27	77	0	90	25	33	31	9	1.88
47466831--47466863	17	1.9	17	93	0	57	9	9	6	75	1.18
47467502--47467552	17	3.1	17	70	18	54	35	1	0	62	1.06
47467504--47467587	40	2.0	43	84	11	111	34	1	1	63	1.10
47494144--47494173	15	2.0	15	93	0	51	56	0	6	36	1.26
47494716--47494871	73	2.2	73	97	1	296	42	3	10	44	1.54
47501450--47501517	29	2.3	29	79	2	73	54	4	0	41	1.20
47501449--47501602	76	2.0	76	97	0	290	52	5	1	40	1.34
47517025--47517063	20	2.0	19	90	5	60	0	25	0	74	0.82
47519613--47519725	41	2.8	41	94	2	192	23	29	19	28	1.98
47520220--47520263	5	8.6	5	80	14	54	40	0	0	59	0.98
47520225--47520254	8	3.8	8	90	0	51	40	0	0	60	0.97
47520219--47520263	16	2.9	16	90	3	74	40	0	0	60	0.97
47521361--47521494	22	5.6	25	78	10	115	17	23	20	39	1.92
47527512--47527562	3	17.0	3	78	8	50	33	35	1	29	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47531596--47531699	51	2.0	51	100	0	208	37	12	9	40	1.76
47535659--47535700	17	2.4	18	84	11	52	47	14	0	38	1.44
47537101--47537202	43	2.4	42	81	6	123	26	27	11	34	1.91
47538938--47539029	19	4.8	19	90	0	148	38	18	8	34	1.82
47538931--47539029	38	2.7	38	93	3	166	37	19	8	35	1.81
47539682--47540358	88	7.7	89	79	3	592	23	24	24	27	2.00
47539682--47540358	176	3.8	176	87	1	912	23	24	24	27	2.00
47539690--47540358	264	2.5	264	80	2	709	23	24	24	27	2.00
47541409--47541455	21	2.2	21	80	0	58	27	38	8	25	1.85
47541536--47541579	23	2.0	23	82	8	56	6	25	0	68	1.14
47542525--47542584	26	2.3	26	82	5	68	58	5	13	23	1.55
47546332--47546409	27	2.9	27	94	0	129	28	30	24	16	1.97
47546257--47546511	129	2.0	129	91	1	413	30	27	20	20	1.98
47546430--47546511	27	2.8	27	83	10	92	31	30	20	17	1.95
47546850--47546907	30	1.9	30	82	0	71	31	22	6	39	1.80
47554159--47554223	30	2.2	29	81	8	76	30	27	6	35	1.81
47554166--47554223	30	1.9	30	85	0	80	31	24	6	37	1.82
47556464--47556495	12	2.7	12	95	0	55	78	0	3	18	0.89
47556580--47556821	85	2.8	85	83	3	261	27	26	15	30	1.96
47556586--47556821	43	5.5	43	80	4	208	28	26	13	30	1.94
47556636--47556821	86	2.2	85	84	2	230	31	26	12	29	1.93
47562386--47562416	7	4.4	7	95	0	53	61	22	0	16	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47562483--47562524	16	2.5	17	92	7	68	45	0	0	54	0.99
47562654--47562718	28	2.3	26	78	19	69	35	38	0	26	1.57
47562711--47562777	21	3.2	21	80	0	89	44	29	4	20	1.71
47562732--47562834	7	14.4	7	73	3	53	44	33	0	21	1.59
47562737--47562847	14	7.9	14	75	2	96	47	30	0	20	1.56
47563156--47563272	42	2.8	41	94	2	207	27	34	21	17	1.95
47564112--47564205	19	4.9	19	89	0	152	39	17	8	35	1.80
47564089--47564205	38	3.0	38	91	5	180	40	17	7	35	1.78
47564362--47564894	64	8.3	64	94	0	888	38	17	11	32	1.85
47564357--47564896	32	16.8	32	79	5	565	38	17	11	32	1.85
47567021--47567124	54	1.9	55	90	2	165	34	22	10	32	1.88
47569992--47570041	7	7.0	7	84	4	64	18	0	36	46	1.49
47569991--47570041	22	2.4	22	93	3	86	17	0	35	47	1.48
47569999--47570030	15	2.1	15	94	0	55	15	0	31	53	1.43
47572327--47572446	39	3.1	39	91	0	195	30	30	20	18	1.96
47573885--47573970	44	2.0	44	93	4	147	39	5	18	36	1.75
47575126--47575164	20	2.0	20	85	10	53	46	12	2	38	1.56
47575269--47575324	27	2.1	27	96	0	103	26	8	14	50	1.72
47575816--47575890	40	1.9	38	89	5	114	36	22	18	22	1.95
47575814--47575897	40	2.2	40	80	4	109	41	21	16	20	1.90
47575940--47576019	41	2.0	41	94	0	142	18	23	28	28	1.98
47576392--47576418	14	1.9	14	100	0	54	25	0	29	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47576470--47576502	14	2.3	15	94	5	59	30	0	33	36	1.58
47576725--47576774	21	2.4	22	76	10	59	28	0	38	34	1.57
47581264--47581354	43	2.1	43	87	2	130	35	10	9	43	1.73
47581627--47581852	43	5.3	42	85	5	276	19	18	31	30	1.96
47581944--47581988	22	2.1	21	87	4	63	42	26	17	13	1.86
47582642--47582680	19	2.1	19	85	9	53	28	5	10	56	1.54
47583510--47583547	20	1.9	20	89	10	60	26	0	13	60	1.33
47584183--47584379	102	1.9	102	87	3	288	45	9	12	32	1.75
47587076--47587115	21	1.9	21	100	0	80	47	5	15	32	1.66
47587345--47587381	19	2.0	19	89	5	58	32	0	10	56	1.34
47587350--47587388	18	2.0	20	85	9	55	38	0	10	51	1.36
47591467--47591815	27	13.0	26	77	6	232	41	18	13	26	1.87
47591485--47591820	54	6.2	53	79	9	333	41	17	13	26	1.87
47591469--47591802	81	4.1	80	80	7	372	41	18	13	26	1.88
47591957--47592053	26	3.7	26	77	2	79	21	23	19	35	1.96
47591982--47592084	26	4.0	26	76	2	100	22	23	20	33	1.97
47591982--47592082	52	1.9	52	82	4	123	22	22	19	34	1.96
47596281--47596326	21	2.1	22	88	4	67	21	6	2	69	1.22
47599247--47599285	19	2.0	20	90	5	62	48	2	7	41	1.45
47600286--47600425	40	3.6	38	74	9	113	27	17	22	31	1.97
47600712--47600742	9	3.4	9	90	0	53	25	12	22	38	1.90
47600796--47600832	9	4.1	9	92	0	65	45	13	10	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47600868--47600910	21	2.0	21	82	8	52	25	32	0	41	1.56
47603177--47603230	28	2.0	27	89	10	85	38	11	3	46	1.57
47605198--47605231	3	11.3	3	93	0	59	29	2	0	67	1.05
47610060--47610089	15	2.0	15	93	0	51	3	26	0	70	1.03
47615603--47615664	31	2.0	31	96	0	115	22	19	30	27	1.98
47621202--47621546	126	2.8	125	86	2	469	31	15	21	32	1.94
47624576--47625141	116	4.9	116	98	0	1053	43	10	9	37	1.71
47625177--47625465	45	6.2	44	82	11	362	26	1	25	46	1.60
47625150--47625467	95	3.3	95	97	0	600	26	0	26	46	1.59
47626449--47626693	45	5.4	45	86	7	341	26	1	24	46	1.62
47626449--47626693	95	2.7	89	89	5	348	26	1	24	46	1.62
47627223--47627262	18	2.2	18	100	0	80	40	5	30	25	1.77
47627914--47627938	7	3.6	7	100	0	50	60	12	0	28	1.32
47629097--47629184	40	2.2	40	95	0	158	44	0	22	32	1.53
47629159--47629209	22	2.3	22	100	0	102	39	0	33	27	1.57
47629493--47629758	9	29.0	9	71	14	161	34	1	18	45	1.57
47629493--47629769	56	5.0	56	90	4	418	35	1	18	45	1.57
47629493--47629769	109	2.5	110	88	6	405	35	1	18	45	1.57
47635073--47635102	15	2.0	15	93	0	51	6	23	20	50	1.71
47636160--47636196	19	1.9	19	94	0	65	32	18	18	29	1.96
47637834--47638121	117	2.4	122	87	5	435	44	2	4	49	1.34
47638065--47638101	19	2.0	19	85	15	51	45	0	0	54	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47637940--47638115	63	3.1	55	68	19	151	44	2	3	49	1.33
47638266--47638356	45	2.0	45	85	2	121	37	28	6	27	1.82
47638337--47638405	16	4.2	16	92	3	120	37	36	0	26	1.57
47638337--47638405	33	2.1	32	94	2	120	37	36	0	26	1.57
47638898--47638953	25	2.2	25	87	3	76	50	1	3	44	1.29
47639813--47639855	17	2.6	17	85	3	52	23	11	4	60	1.50
47639903--47640179	108	2.4	115	87	8	379	36	4	5	53	1.45
47642796--47642838	17	2.6	17	85	3	52	23	11	4	60	1.50
47643005--47643110	35	3.0	36	74	18	130	37	3	3	54	1.36
47642986--47643096	36	3.1	37	71	18	108	35	2	3	58	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185