genome.fa.s5.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  42  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12435878--12436008	27	4.9	27	78	3	131	25	21	10	41	1.85
12435874--12436008	52	2.5	54	77	2	139	25	20	10	43	1.83
12442772--12442817	13	3.8	13	78	18	55	19	0	4	76	0.96
12450380--12450433	20	2.7	20	88	0	72	22	31	0	46	1.52
12453576--12453620	19	2.4	19	92	3	74	57	11	0	31	1.33
12453636--12453694	20	2.9	21	76	16	61	69	1	1	27	1.07
12453691--12453723	16	2.1	16	94	0	57	54	3	6	36	1.41
12454231--12454309	27	2.9	27	78	0	86	24	22	17	35	1.95
12456015--12456093	26	2.9	27	78	17	92	31	27	10	30	1.90
12456015--12456142	53	2.4	52	81	6	132	28	26	11	33	1.91
12456030--12456142	27	4.3	27	80	3	104	25	25	11	37	1.90
12457471--12457618	57	2.6	58	80	4	160	35	19	15	29	1.93
12457470--12457678	84	2.5	85	80	7	239	35	19	15	29	1.93
12457470--12457678	28	7.4	29	74	8	173	35	19	15	29	1.93
12457582--12457691	56	2.0	56	83	3	141	34	20	14	30	1.92
12466347--12466546	51	3.9	51	77	7	219	25	17	28	29	1.97
12466361--12466557	101	2.0	101	84	6	247	25	16	26	30	1.97
12471819--12471939	50	2.4	50	80	1	134	23	19	26	30	1.98
12471819--12472011	101	1.9	101	84	5	255	25	18	27	29	1.98
12472205--12472277	37	1.9	38	83	2	94	42	2	21	32	1.67
12477890--12477947	26	2.2	26	96	0	107	32	5	12	50	1.62
12478896--12478942	10	4.6	10	85	12	51	34	0	4	61	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12479061--12479105	22	2.0	22	83	8	56	42	6	0	51	1.28
12485239--12485693	229	2.0	229	93	0	784	30	22	12	33	1.91
12492094--12492134	13	2.7	15	76	23	50	19	24	29	26	1.98
12504465--12504588	27	4.5	28	92	4	191	25	13	29	30	1.94
12504465--12504588	55	2.3	55	92	1	205	25	13	29	30	1.94
12513584--12513619	18	1.9	19	88	5	56	38	16	8	36	1.79
12528354--12528483	40	3.3	39	84	5	163	23	21	27	26	1.99
12528354--12528518	79	2.1	79	80	2	179	25	21	27	25	1.99
12536335--12536367	16	2.2	15	89	10	50	75	3	9	12	1.14
12546522--12546587	20	3.2	20	81	10	89	15	34	18	31	1.92
12546522--12546596	20	3.7	20	79	12	82	14	34	20	30	1.92
12548072--12548289	111	2.0	111	89	0	337	24	19	32	23	1.97
12550191--12550265	26	2.9	25	78	6	78	16	12	38	33	1.85
12556863--12557043	40	4.6	40	80	6	190	25	27	21	25	1.99
12556863--12557043	79	2.3	80	80	7	190	25	27	21	25	1.99
12556891--12556994	39	2.6	40	90	1	156	25	27	20	25	1.99
12565450--12565500	15	3.4	15	68	10	50	27	35	21	15	1.94
12565444--12565513	30	2.3	30	95	0	122	21	32	24	21	1.98
12569873--12570147	27	10.2	27	76	7	195	40	19	19	21	1.92
12569873--12570122	54	4.6	54	75	6	220	40	18	18	21	1.91
12570170--12570266	24	4.0	24	79	0	95	26	6	21	45	1.75
12570228--12570278	24	2.1	24	88	0	75	21	7	19	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12570450--12570619	32	5.4	32	82	6	195	20	19	21	39	1.93
12570449--12570605	63	2.5	64	84	3	201	20	20	21	38	1.94
12570907--12570968	32	1.9	33	86	3	90	24	25	19	30	1.98
12570908--12570977	32	2.2	33	81	2	79	24	24	22	28	1.99
12575891--12575947	28	2.0	28	100	0	114	38	17	17	26	1.92
12592048--12592100	20	2.7	20	81	0	70	13	24	15	47	1.81
12609106--12609156	5	10.8	5	85	10	72	41	1	15	41	1.58
12611134--12611262	33	3.7	33	73	13	125	23	2	14	59	1.47
12611120--12611270	72	2.1	73	96	1	277	24	2	13	58	1.48
12611321--12611358	18	2.1	18	85	9	51	28	0	5	65	1.14
12618182--12618212	2	15.5	2	100	0	62	51	0	0	48	1.00
12626582--12626641	31	1.9	31	89	3	93	60	5	1	33	1.29
12626613--12626663	27	2.0	25	84	7	66	60	9	0	29	1.28
12626613--12626668	24	2.4	24	82	8	71	62	8	0	28	1.25
12626802--12626836	17	2.1	17	88	0	52	54	0	8	37	1.31
12626956--12626994	3	13.0	3	88	0	51	64	5	2	28	1.28
12627299--12627356	22	2.6	22	81	7	64	41	17	3	37	1.66
12627327--12627382	21	2.9	19	87	10	71	35	16	7	41	1.75
12627369--12627394	12	2.2	12	100	0	52	42	15	7	34	1.75
12630097--12630194	32	3.0	32	85	7	126	40	12	10	36	1.77
12635009--12635070	18	3.6	18	72	12	58	54	12	1	30	1.48
12635564--12635610	17	2.8	17	90	0	67	23	19	25	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12640412--12640567	72	2.2	72	78	0	168	24	17	28	29	1.97
12647402--12647445	22	2.0	22	90	0	70	36	9	20	34	1.84
12657725--12657780	9	6.1	9	75	17	53	57	1	0	41	1.09
12657711--12657857	19	7.8	18	70	21	90	61	4	0	34	1.15
12657721--12657857	37	3.6	37	75	13	118	59	4	0	35	1.17
12657711--12658067	10	37.9	9	65	23	82	60	5	1	32	1.28
12657824--12657908	19	4.5	19	68	19	52	57	1	2	38	1.19
12658023--12658067	9	4.9	10	78	15	53	66	2	0	31	1.04
12658551--12658618	30	2.3	30	84	5	84	41	0	4	54	1.20
12658537--12658734	9	20.9	9	65	21	52	36	2	5	56	1.33
12667807--12667867	31	2.0	31	83	0	77	42	3	4	49	1.40
12668423--12668484	32	1.9	32	86	0	88	40	6	1	51	1.37
12671754--12671781	13	2.2	13	100	0	56	0	14	21	64	1.29
12673618--12673643	13	2.0	13	100	0	52	38	0	7	53	1.30
12676712--12676919	91	2.3	91	93	0	344	46	3	4	46	1.39
12676834--12676894	28	2.2	28	85	5	81	45	0	3	50	1.17
12676752--12676894	44	3.2	43	69	20	121	46	2	3	48	1.31
12676949--12676991	15	2.8	16	79	10	54	44	0	2	53	1.13
12676946--12677134	59	3.2	59	69	16	190	41	2	4	51	1.37
12676938--12677227	120	2.4	120	96	0	526	42	2	5	50	1.38
12677060--12677111	15	3.6	15	80	12	56	44	0	1	53	1.11
12677008--12677195	61	3.1	61	68	17	183	44	1	6	47	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12677369--12677459	45	2.0	44	85	6	121	32	28	5	32	1.80
12677436--12677484	16	3.1	16	81	0	62	22	30	6	40	1.78
12679230--12679263	15	2.3	15	90	5	52	73	0	0	26	0.83
12684658--12684711	24	2.2	24	87	6	74	31	20	29	18	1.96
12684724--12684781	25	2.4	24	79	2	71	41	20	22	15	1.90
12692720--12692765	6	7.0	6	81	18	56	17	60	6	15	1.55
12692720--12692765	14	3.5	13	88	11	67	17	60	6	15	1.55
12694003--12694067	32	2.0	32	96	0	121	30	9	13	46	1.75
12694204--12694255	25	2.1	25	96	0	95	40	3	9	46	1.55
12703837--12703889	25	2.1	25	89	0	79	37	0	0	62	0.96
12703894--12703932	18	2.1	18	85	4	51	30	0	2	66	1.05
12708297--12708353	30	1.9	30	92	0	96	29	1	29	38	1.67
12710104--12710152	14	3.6	14	79	12	50	67	0	32	0	0.91
12710129--12710160	10	3.2	10	90	0	55	75	0	25	0	0.81
12710559--12710583	3	8.3	3	100	0	50	68	0	0	32	0.90
12710703--12710740	20	1.9	20	88	0	58	36	13	7	42	1.73
12710857--12710905	18	2.8	17	84	6	71	26	16	10	46	1.78
12710964--12711037	17	4.5	16	73	9	69	39	10	12	37	1.78
12711045--12711302	17	13.9	19	69	20	120	32	11	10	45	1.75
12711045--12711304	18	14.1	18	69	20	94	32	11	10	45	1.74
12711003--12711093	44	2.1	43	87	8	130	23	12	14	50	1.76
12711009--12711103	45	2.1	44	81	9	104	27	11	11	49	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12710996--12711136	61	2.3	62	81	9	164	29	10	12	47	1.74
12711114--12711157	22	2.0	22	82	4	54	40	6	6	45	1.57
12711143--12711172	15	2.0	15	100	0	60	46	6	6	40	1.56
12714478--12714544	20	3.3	20	82	2	89	10	32	22	34	1.88
12715177--12715228	25	2.1	25	92	0	86	28	19	11	40	1.86
12719137--12719354	46	4.6	46	80	8	233	31	22	15	30	1.95
12719181--12719385	98	2.1	97	87	2	286	33	23	14	28	1.94
12724064--12724157	45	2.1	44	86	3	127	20	23	7	47	1.74
12730350--12730387	20	1.9	20	89	10	60	42	2	2	52	1.29
12731643--12731745	46	2.2	46	87	3	145	43	15	7	33	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185