genome.fa.s5.2.7.7.80.10.50.1000.182.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  182  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55444401--55444543	72	2.0	70	90	2	223	32	16	20	30	1.95
55445162--55445223	3	20.7	3	75	18	58	61	3	4	30	1.33
55449561--55449607	20	2.5	20	82	6	62	40	2	0	57	1.11
55452289--55452354	7	8.6	7	76	18	53	43	1	1	53	1.19
55452292--55452357	8	8.4	8	73	18	50	45	1	1	51	1.19
55452289--55452357	27	2.5	26	76	23	79	44	1	1	52	1.19
55452299--55452367	32	2.2	32	79	7	79	47	1	2	47	1.25
55452374--55452417	10	4.3	10	77	5	52	75	6	13	4	1.17
55452377--55452417	15	2.7	15	80	3	55	73	7	14	4	1.22
55452377--55452420	16	2.8	17	80	13	58	70	9	15	4	1.30
55452397--55452457	25	2.6	24	80	14	58	70	4	22	1	1.15
55458828--55458874	24	2.0	24	95	0	85	78	8	10	2	1.04
55462919--55463000	41	2.0	41	100	0	164	31	24	17	26	1.97
55465125--55465195	29	2.4	30	85	4	99	42	12	9	35	1.76
55465517--55465576	31	1.9	32	82	3	77	56	8	11	23	1.61
55468455--55468480	8	3.2	8	100	0	52	65	0	0	34	0.93
55475188--55475307	56	2.1	57	89	4	190	43	6	14	35	1.71
55481542--55481744	44	4.6	44	85	4	277	30	28	19	21	1.98
55481686--55481827	41	3.4	41	83	7	169	30	27	15	26	1.96
55486998--55487039	16	2.6	16	85	7	50	35	2	21	40	1.66
55495485--55495518	15	2.3	15	94	0	59	14	32	20	32	1.93
55499093--55499152	30	2.0	30	87	3	86	43	3	23	30	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55499362--55499393	13	2.5	13	94	0	55	31	0	12	56	1.37
55499492--55499726	51	4.6	51	100	0	470	28	27	25	18	1.98
55505020--55505074	22	2.5	22	96	0	101	32	7	20	40	1.80
55522063--55522160	33	2.9	35	73	19	91	48	0	4	46	1.20
55529468--55529521	23	2.4	23	75	6	58	42	12	0	44	1.43
55530781--55530848	32	2.2	32	97	2	129	33	5	17	42	1.74
55533381--55533406	9	2.9	9	100	0	52	57	0	0	42	0.98
55545620--55545726	53	2.0	53	98	0	205	14	44	14	26	1.83
55561547--55561576	4	7.5	4	100	0	60	23	0	26	50	1.50
55565799--55565869	35	2.0	35	86	0	97	32	21	8	38	1.83
55568840--55568876	12	3.2	12	96	3	67	35	13	27	24	1.93
55571078--55571184	31	3.6	31	65	21	84	42	12	21	24	1.87
55576922--55576962	21	2.0	21	90	0	64	19	29	21	29	1.98
55584132--55584185	21	2.6	20	78	16	56	29	7	3	59	1.42
55590396--55590466	29	2.4	31	83	4	83	29	4	15	50	1.63
55595766--55595813	24	2.0	24	100	0	96	29	16	20	33	1.95
55601152--55601212	32	1.9	33	83	9	83	29	14	14	40	1.86
55605255--55605287	14	2.3	15	94	5	59	81	0	18	0	0.68
55606808--55607286	73	6.4	72	83	8	523	28	17	22	31	1.97
55606829--55607286	147	3.0	145	83	7	524	28	18	22	30	1.97
55607068--55607234	83	2.0	83	95	0	298	28	18	24	28	1.98
55607533--55607644	54	2.0	56	87	5	165	31	13	16	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55607316--55607788	142	3.3	142	89	3	660	31	14	17	35	1.91
55607662--55607691	13	2.3	13	94	0	51	16	10	6	66	1.41
55607675--55607844	56	3.0	57	88	4	245	32	12	18	36	1.88
55607991--55608100	44	2.5	44	96	0	202	21	21	28	28	1.99
55610935--55611002	29	2.3	29	85	7	84	35	10	4	50	1.57
55611881--55611917	17	2.2	17	100	0	74	37	16	5	40	1.71
55619851--55619887	19	1.9	19	88	0	56	27	5	2	64	1.28
55629135--55629177	21	2.0	21	90	0	68	30	11	20	37	1.89
55629698--55629722	10	2.5	10	100	0	50	12	32	20	36	1.89
55638956--55639020	32	2.0	32	100	0	130	38	12	12	36	1.80
55643281--55643333	25	2.2	24	86	10	72	54	13	1	30	1.49
55645755--55645799	23	1.9	24	81	4	56	35	6	8	48	1.61
55648619--55648700	39	2.1	40	80	19	93	34	2	3	59	1.28
55660363--55660413	27	2.0	26	88	7	77	41	3	1	52	1.31
55661985--55662042	30	2.0	29	82	3	71	56	12	10	20	1.64
55663401--55663451	18	2.8	20	75	21	51	29	0	5	64	1.17
55665306--55665350	23	2.0	23	95	0	81	51	0	4	44	1.21
55670688--55670758	28	2.5	29	79	2	81	32	11	8	47	1.69
55674942--55675104	79	2.0	80	90	1	256	33	31	10	24	1.89
55678058--55678170	34	3.3	33	80	7	111	30	0	20	48	1.50
55678072--55678119	25	1.9	25	82	0	60	31	0	12	56	1.37
55680266--55680318	25	2.1	25	96	0	97	33	22	20	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55681300--55681329	9	3.4	9	90	9	53	63	0	0	36	0.95
55681351--55681407	25	2.3	24	80	11	71	54	7	0	38	1.28
55681447--55681497	27	1.9	27	92	4	86	62	1	0	35	1.06
55681355--55681550	95	2.1	94	91	2	315	56	5	3	35	1.37
55695075--55695132	29	2.0	30	89	3	91	25	27	5	41	1.76
55696706--55696741	15	2.4	15	100	0	72	41	19	13	25	1.88
55705865--55705919	27	2.0	27	96	0	101	36	14	18	30	1.91
55709458--55709482	12	2.1	12	100	0	50	32	16	0	52	1.44
55723790--55724436	323	2.0	323	97	0	1215	38	10	18	31	1.85
55724973--55725119	76	1.9	76	97	0	276	44	9	21	24	1.81
55738588--55738613	13	2.0	13	100	0	52	30	30	0	38	1.58
55755673--55755701	14	2.0	15	93	6	51	75	3	0	20	0.94
55767847--55768028	98	1.8	99	94	3	323	34	19	23	23	1.96
55769612--55769761	67	2.2	67	81	8	171	32	17	28	21	1.96
55769636--55769819	67	2.8	64	77	10	187	29	17	29	22	1.97
55769897--55770110	107	2.0	107	96	0	392	27	8	27	37	1.85
55776617--55776689	24	3.0	24	88	4	94	17	23	6	52	1.69
55776656--55776794	40	3.5	40	80	10	124	21	23	7	47	1.75
55781195--55781278	26	3.2	25	91	6	132	35	4	23	35	1.76
55782900--55782992	29	3.3	27	79	7	96	18	22	23	35	1.96
55782894--55783010	27	4.3	27	82	7	128	17	22	22	37	1.94
55786990--55787073	26	3.2	25	91	6	132	35	4	23	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55788702--55788797	29	3.5	28	85	7	108	15	23	21	38	1.92
55795544--55795570	11	2.5	11	100	0	54	37	14	11	37	1.82
55798425--55798500	38	2.0	38	100	0	152	39	21	5	34	1.76
55801176--55801290	27	4.3	26	82	7	124	19	22	22	35	1.96
55809045--55809073	13	2.3	13	94	5	51	41	31	0	27	1.56
55809417--55809498	26	3.2	26	98	0	155	31	7	25	35	1.84
55811094--55811198	27	3.9	26	90	5	156	18	24	22	34	1.96
55818369--55818485	58	2.0	58	96	3	218	22	7	34	35	1.83
55821885--55821941	28	2.0	28	93	0	96	38	12	15	33	1.85
55826856--55826965	38	2.9	38	90	1	177	11	22	29	36	1.90
55827922--55827960	20	2.0	20	85	10	53	30	15	5	48	1.66
55828430--55828536	55	1.9	55	90	0	169	39	11	9	40	1.73
55829353--55829385	15	2.2	15	100	0	66	42	21	12	24	1.86
55832437--55832507	25	2.8	25	85	4	81	33	18	25	22	1.96
55832587--55832644	26	2.3	26	84	3	82	39	24	17	18	1.92
55832726--55832812	25	3.5	25	85	1	95	35	20	26	17	1.95
55832705--55832812	25	4.4	24	78	6	92	33	21	27	17	1.96
55835014--55835102	17	4.9	19	89	6	125	37	10	15	37	1.82
55835082--55835138	21	2.6	22	84	10	73	35	3	17	43	1.66
55835082--55835125	23	2.0	21	91	8	70	36	4	18	40	1.71
55835090--55835135	23	2.0	23	87	4	67	32	4	15	47	1.65
55836770--55836813	23	1.9	23	90	0	70	34	2	25	38	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55836685--55836878	104	1.9	104	88	0	298	37	9	19	34	1.84
55837788--55837884	51	1.9	51	89	0	149	43	12	6	38	1.67
55840198--55840238	19	2.3	18	91	8	66	39	12	12	36	1.80
55846930--55846981	20	2.5	20	90	3	86	25	15	11	48	1.78
55846999--55847048	20	2.5	20	100	0	100	44	14	16	26	1.85
55848996--55849060	32	2.0	32	90	0	103	36	4	6	52	1.47
55853787--55853938	23	6.7	24	75	20	100	40	0	2	57	1.13
55853806--55853922	34	3.4	32	84	14	137	40	0	1	58	1.08
55853818--55853940	21	5.6	21	74	19	101	40	0	1	57	1.08
55853847--55853940	20	4.9	19	72	22	74	39	0	2	58	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185