genome.fa.s5.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  102  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32235995--32236159	37	4.5	37	98	0	312	50	3	7	39	1.46
32236156--32236314	29	5.6	28	84	8	207	23	0	32	44	1.58
32236157--32236313	54	2.8	56	86	7	194	22	0	31	44	1.58
32236196--32236253	23	2.4	24	85	5	73	17	0	36	46	1.48
32236816--32236856	18	2.3	18	86	0	64	41	4	31	21	1.74
32237613--32237638	7	3.7	7	100	0	52	57	15	0	26	1.38
32238288--32238445	79	2.0	79	96	0	289	22	30	24	22	1.99
32238895--32238964	22	3.2	22	97	0	131	44	0	30	25	1.55
32238856--32239042	95	2.0	96	92	1	313	43	1	28	26	1.62
32238987--32239042	22	2.5	22	85	2	76	39	1	32	26	1.67
32239027--32239059	10	3.0	11	86	13	50	45	0	36	18	1.49
32243161--32243201	21	2.0	21	85	0	55	41	12	7	39	1.70
32245231--32245271	17	2.4	17	91	4	64	21	19	0	58	1.39
32251436--32251467	5	6.6	5	92	7	57	62	0	0	37	0.95
32259292--32259333	20	2.0	23	86	13	63	45	2	0	52	1.13
32259761--32259787	3	9.0	3	100	0	54	66	0	0	33	0.92
32262422--32262498	28	2.7	27	80	7	82	58	0	2	38	1.12
32262487--32262539	9	5.8	9	95	2	88	58	0	1	39	1.09
32262485--32262549	18	3.5	18	85	4	67	60	0	4	35	1.18
32262473--32262549	27	2.8	27	75	18	86	59	0	3	36	1.16
32262858--32262956	27	3.6	27	71	15	78	29	3	5	62	1.31
32273548--32273651	52	2.0	52	84	0	136	28	25	12	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32278176--32278261	11	7.6	11	73	18	61	5	17	2	74	1.12
32278174--32278250	6	13.2	6	70	10	52	5	18	2	74	1.13
32287519--32287591	25	2.7	27	77	8	69	63	5	1	30	1.26
32293464--32293503	20	2.0	20	85	0	53	25	10	15	50	1.74
32298391--32298435	22	2.0	22	91	0	72	33	2	15	48	1.57
32300122--32300471	85	4.1	86	79	6	313	26	27	17	28	1.97
32300133--32300469	43	7.9	43	83	4	353	26	27	16	29	1.97
32300132--32300452	170	1.9	170	81	6	391	25	27	17	29	1.97
32301247--32301274	3	9.3	3	100	0	56	32	32	0	35	1.58
32302957--32303006	26	1.9	26	84	8	66	56	20	14	10	1.66
32303463--32303531	16	4.2	16	92	3	120	24	1	37	36	1.65
32303463--32303531	33	2.1	32	94	2	120	24	1	37	36	1.65
32303512--32303602	45	2.0	45	85	2	121	27	6	28	37	1.82
32303767--32303801	18	2.0	17	88	5	52	54	0	0	45	0.99
32303902--32303942	16	2.5	17	92	4	66	26	2	39	31	1.70
32303902--32303946	17	2.8	16	93	3	72	26	2	37	33	1.69
32304183--32304217	18	2.0	17	88	5	52	54	0	0	45	0.99
32304141--32304213	27	2.7	27	76	8	76	52	2	0	45	1.15
32304330--32304364	18	2.0	17	88	5	52	54	0	0	45	0.99
32304102--32304376	147	1.9	149	95	1	500	46	3	2	47	1.35
32304432--32304484	16	3.4	17	73	21	53	56	0	0	43	0.99
32304358--32304544	60	3.1	59	66	13	157	49	6	2	41	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32304310--32304604	119	2.5	120	93	2	495	50	4	2	43	1.35
32307422--32307681	90	2.9	90	99	0	511	31	10	22	34	1.89
32309102--32309303	41	4.9	41	84	1	253	29	28	19	22	1.98
32309068--32309303	82	2.9	81	84	1	301	29	27	19	23	1.98
32309367--32309471	40	2.6	39	82	7	113	20	22	20	36	1.95
32309396--32309472	40	1.9	40	89	0	118	20	22	22	35	1.96
32312045--32312118	6	13.6	5	84	10	69	18	22	1	56	1.49
32312045--32312118	12	6.7	11	79	15	82	18	22	1	56	1.49
32312048--32312118	28	2.6	29	80	6	85	19	23	1	54	1.52
32312110--32312159	20	2.5	20	81	12	59	26	10	0	64	1.25
32312113--32312159	21	2.3	19	82	13	58	25	10	0	63	1.26
32312141--32312181	15	2.7	15	85	14	50	17	12	2	68	1.31
32312227--32312278	19	2.7	19	90	0	77	34	15	1	48	1.56
32312262--32312346	23	3.5	23	76	14	98	31	15	0	52	1.43
32312336--32312374	19	2.1	18	85	4	51	23	7	0	69	1.14
32312770--32312872	22	4.9	21	79	12	106	21	16	0	61	1.40
32312770--32312855	41	2.1	41	86	4	120	20	16	1	61	1.40
32312766--32313092	5	61.6	5	69	20	118	25	14	0	58	1.43
32312837--32312973	41	3.2	40	70	16	98	22	11	1	64	1.35
32312766--32312883	27	4.4	26	68	19	73	22	14	0	61	1.38
32313001--32313092	28	3.3	28	90	6	159	30	16	0	53	1.43
32313033--32313093	23	2.6	24	82	12	74	32	16	0	50	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32313167--32313206	15	2.7	15	92	0	62	22	15	0	62	1.32
32313183--32313231	22	2.3	21	83	13	57	26	14	2	57	1.48
32312070--32313647	750	2.1	723	85	9	2098	26	15	5	51	1.66
32313256--32313298	21	2.0	21	82	8	52	32	6	0	60	1.23
32313493--32313602	5	20.6	5	88	7	123	17	22	0	59	1.43
32313493--32313602	22	5.1	21	84	11	136	17	22	0	59	1.43
32313597--32313642	20	2.3	21	85	11	69	26	10	0	63	1.27
32313618--32313708	26	3.3	26	70	14	76	26	13	0	60	1.33
32313617--32313723	56	1.9	56	88	3	162	24	16	0	58	1.38
32316777--32317142	169	2.2	164	83	7	445	32	22	16	28	1.96
32319883--32319907	6	4.2	6	100	0	50	20	0	0	80	0.72
32323957--32324153	98	2.0	98	90	0	313	37	22	9	30	1.86
32326306--32326506	44	4.7	44	73	7	153	31	21	19	27	1.97
32326265--32326458	84	2.3	85	80	2	228	30	21	19	27	1.98
32326477--32326594	45	2.6	45	80	12	143	26	28	19	25	1.99
32326673--32326794	45	2.7	46	81	9	144	25	27	20	27	1.99
32327988--32328050	31	2.0	31	90	0	99	30	12	20	36	1.90
32330024--32330082	17	3.2	17	74	21	64	44	27	15	13	1.84
32337964--32338161	98	2.0	97	95	1	297	36	24	11	27	1.89
32342687--32342713	14	1.9	14	100	0	54	37	11	14	37	1.82
32343784--32343844	19	3.1	20	81	13	65	50	1	0	47	1.10
32343791--32343844	19	2.6	21	80	19	69	51	1	0	46	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32344108--32344141	17	1.9	18	94	5	61	44	11	11	32	1.77
32348640--32348703	27	2.4	27	81	0	65	26	32	29	10	1.90
32349453--32349478	13	2.0	13	100	0	52	46	0	7	46	1.31
32349967--32350392	159	2.7	158	92	2	712	54	9	8	27	1.61
32350407--32350662	128	2.0	132	86	3	367	25	8	9	56	1.59
32367369--32367477	33	3.4	30	76	18	103	54	5	0	40	1.24
32367371--32367473	10	10.8	10	74	19	60	53	4	0	41	1.22
32367400--32367473	10	7.8	10	78	17	77	55	2	0	41	1.14
32367369--32367453	27	3.0	28	84	6	84	55	5	0	38	1.24
32367400--32367491	47	2.0	46	95	2	166	57	3	0	39	1.15
32367370--32367470	30	3.6	27	74	12	87	53	4	0	41	1.22
32370846--32370874	14	2.0	15	93	6	51	82	0	10	6	0.83
32371656--32371736	29	2.8	29	76	0	81	19	23	16	40	1.90
32376829--32376965	43	3.0	46	72	22	135	26	17	28	27	1.98
32380799--32380842	22	2.0	23	90	4	72	68	9	0	22	1.18
32386714--32386833	40	3.0	40	77	12	95	20	30	27	21	1.98
32388054--32388099	22	2.0	23	87	4	67	76	0	6	17	1.00
32388027--32388096	30	2.3	30	97	0	131	75	0	5	18	0.99
32388261--32388301	12	3.4	12	83	12	57	53	0	9	36	1.34
32388716--32388745	8	3.8	8	95	0	51	90	0	3	6	0.56
32396224--32396280	26	2.2	26	78	3	62	64	0	10	24	1.24
32398106--32398149	17	2.6	16	82	7	52	63	0	2	34	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32399225--32399280	23	2.5	23	85	5	71	30	5	3	60	1.36
32404869--32404933	6	10.2	6	73	18	51	72	0	6	21	1.06
32412848--32412900	22	2.5	22	84	3	63	60	5	5	28	1.42
32415888--32415991	30	3.4	30	69	13	86	39	1	21	37	1.64
32417160--32417199	9	4.7	9	90	9	66	75	7	0	17	1.03
32417158--32417200	16	2.3	20	77	22	58	76	6	0	16	0.99
32418996--32419022	3	9.0	3	100	0	54	66	0	33	0	0.92
32421967--32422018	5	10.2	5	82	12	61	36	15	25	23	1.93
32421967--32422018	26	2.0	26	85	7	70	36	15	25	23	1.93
32432995--32433040	18	2.6	17	86	10	65	15	2	30	52	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185