genome.fa.s5.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  129  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39683834--39683904	21	3.7	20	71	15	60	39	0	2	57	1.13
39685002--39685051	20	2.5	21	80	9	59	54	4	0	42	1.19
39691741--39691838	42	2.2	44	85	5	128	38	15	14	31	1.87
39691980--39692011	13	2.4	14	85	15	50	56	0	0	43	0.99
39692057--39692122	21	2.9	22	76	14	71	46	1	0	51	1.10
39692057--39692130	37	2.0	37	84	5	96	47	1	0	51	1.09
39692140--39692186	16	2.9	16	84	12	60	55	0	0	44	0.99
39692219--39692275	15	3.5	15	71	17	51	50	3	0	45	1.18
39696886--39698195	44	29.6	44	67	13	228	29	20	17	31	1.96
39696874--39697071	98	2.0	98	89	3	301	29	21	16	32	1.95
39697248--39697658	85	4.8	85	70	11	291	30	20	17	31	1.96
39697163--39697709	129	4.2	129	93	0	918	29	20	18	31	1.97
39697877--39698244	41	8.4	44	66	17	151	29	20	19	30	1.97
39697772--39698195	45	9.6	45	68	11	164	30	20	17	31	1.96
39697765--39698195	87	5.0	83	71	14	341	29	20	17	32	1.96
39697765--39698244	175	2.7	175	93	1	784	29	20	18	31	1.96
39699473--39699519	7	7.0	7	80	9	62	14	17	2	65	1.36
39699473--39699519	13	3.5	13	80	13	60	14	17	2	65	1.36
39699477--39699515	20	2.0	20	94	0	69	15	17	2	64	1.41
39708707--39708802	35	2.7	35	80	12	97	70	8	8	12	1.32
39709655--39709683	14	2.0	15	93	6	51	75	0	10	13	1.04
39710876--39711864	128	7.7	128	95	0	1546	31	19	24	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39711875--39712114	44	5.5	44	70	8	177	27	18	25	27	1.98
39723613--39723670	20	2.8	20	80	12	62	12	6	10	70	1.33
39727229--39727285	30	1.9	30	85	7	80	19	10	7	63	1.49
39735053--39735138	41	2.1	41	100	0	172	48	11	17	22	1.79
39737765--39737827	23	2.7	23	79	20	78	25	31	0	42	1.55
39737773--39737808	11	3.2	11	96	4	63	19	36	0	44	1.51
39737765--39737824	22	2.6	22	80	19	70	25	33	0	41	1.55
39737765--39737827	11	5.5	11	80	19	60	25	31	0	42	1.55
39737786--39737885	51	2.0	51	85	0	137	26	26	1	47	1.59
39739054--39739079	7	3.7	7	100	0	52	26	0	15	57	1.38
39740349--39740881	22	24.6	21	69	17	175	48	29	0	21	1.55
39740437--39740882	22	20.8	22	75	7	312	48	29	0	21	1.55
39740764--39740889	7	17.1	7	69	21	62	49	26	0	23	1.56
39740836--39740889	8	7.1	8	78	16	53	50	24	0	25	1.50
39744400--39744736	125	2.7	124	82	2	424	30	22	17	29	1.96
39748208--39748254	23	2.0	24	83	4	60	8	25	2	63	1.34
39753582--39753622	18	2.3	19	80	20	52	70	2	0	26	0.99
39753848--39753900	20	2.7	20	82	8	63	24	1	0	73	0.93
39764365--39764405	16	2.5	15	88	11	55	53	2	0	43	1.13
39764391--39764833	215	2.1	213	90	5	698	42	6	7	42	1.59
39770531--39770566	17	2.1	17	94	0	63	22	25	8	44	1.80
39770787--39771063	41	6.8	41	84	4	337	19	20	31	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39776390--39776674	43	6.7	43	83	0	284	23	15	32	29	1.95
39776390--39776674	86	3.3	86	84	3	324	23	15	32	29	1.95
39776396--39776663	129	2.1	128	81	4	315	23	14	32	29	1.95
39778885--39778942	28	2.0	29	87	9	84	65	1	15	17	1.36
39779666--39779725	25	2.4	25	85	2	84	25	26	1	46	1.62
39782229--39782354	64	2.0	64	93	0	216	28	4	25	41	1.75
39782670--39782710	18	2.3	19	87	8	59	12	24	43	19	1.85
39786495--39786551	30	1.9	30	100	0	114	35	10	19	35	1.86
39788785--39788816	7	4.6	7	100	0	64	28	28	0	43	1.55
39792687--39792782	43	2.2	44	81	1	104	31	26	16	26	1.97
39795101--39795175	26	2.9	26	80	2	80	21	25	18	34	1.96
39813672--39813717	21	2.1	21	88	8	65	34	4	2	58	1.30
39822895--39822935	21	2.0	21	100	0	82	34	0	9	56	1.32
39822914--39823101	61	3.2	60	73	10	215	42	1	4	51	1.32
39824982--39825022	21	2.0	21	100	0	82	34	0	9	56	1.32
39825006--39825189	38	4.7	37	66	19	97	42	2	5	50	1.37
39824997--39825293	120	2.5	120	95	1	533	42	1	5	50	1.35
39825447--39825487	21	2.0	21	100	0	82	34	0	9	56	1.32
39825496--39825538	16	2.8	16	96	3	79	48	0	6	44	1.29
39825462--39825929	120	3.9	120	93	2	782	43	1	4	50	1.31
39825875--39825909	18	2.0	17	88	5	52	45	0	0	54	0.99
39826064--39826158	44	2.1	45	86	5	131	32	28	6	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39829310--39829340	12	2.7	11	95	5	53	35	0	0	64	0.94
39840930--39840965	18	2.0	18	100	0	72	44	11	16	27	1.82
39843365--39843442	37	2.1	38	85	2	104	26	16	25	30	1.97
39843192--39844176	126	7.7	126	91	3	1529	28	14	26	30	1.95
39843192--39844191	385	2.6	389	92	2	1635	27	15	26	31	1.95
39844009--39844086	37	2.1	38	83	7	97	26	15	24	33	1.95
39843192--39844176	259	3.9	258	91	2	1553	28	14	26	30	1.95
39843194--39844307	385	2.9	385	87	4	1561	28	14	25	31	1.95
39844052--39844363	89	3.5	89	86	1	421	31	13	23	32	1.93
39846216--39846423	100	2.1	102	95	1	375	15	8	11	63	1.50
39852726--39852753	14	2.0	14	100	0	56	14	21	0	64	1.29
39853861--39853950	3	30.3	3	82	2	92	0	36	0	63	0.95
39855459--39855507	13	3.7	13	77	2	53	57	2	2	38	1.22
39858545--39858684	40	3.4	40	80	10	131	16	25	22	35	1.95
39859718--39859777	27	2.2	28	82	8	72	46	5	6	41	1.52
39860205--39860468	116	2.3	116	80	5	282	28	16	19	35	1.94
39861917--39861955	21	1.9	20	94	5	69	28	23	15	33	1.95
39862443--39862498	29	2.0	28	96	3	103	42	3	17	35	1.67
39862451--39862498	14	3.4	14	72	16	53	39	2	20	37	1.65
39864872--39864936	21	3.1	21	84	8	87	38	18	40	3	1.66
39865358--39865627	43	6.3	42	84	6	323	25	24	20	29	1.99
39865358--39865627	85	3.2	85	86	4	341	25	24	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39865358--39865627	128	2.1	128	81	8	327	25	24	20	29	1.99
39866308--39866362	25	2.2	26	83	3	67	34	3	1	60	1.25
39871084--39871112	13	2.2	13	100	0	58	24	24	13	37	1.91
39879786--39879832	14	3.1	15	81	6	51	61	0	6	31	1.21
39880005--39880056	3	16.7	3	80	7	59	61	1	5	30	1.30
39880005--39880066	28	2.3	27	83	10	74	59	3	8	29	1.42
39880005--39880065	19	3.2	18	84	9	68	60	3	6	29	1.38
39880021--39880068	19	2.5	19	90	6	71	60	4	8	27	1.44
39881877--39882014	51	2.7	50	71	16	122	23	24	23	28	2.00
39881857--39882058	101	2.0	102	86	4	284	23	23	23	29	1.99
39881857--39882010	50	3.0	52	70	11	147	23	22	23	30	1.99
39881978--39882135	81	2.0	81	94	0	280	22	24	25	27	2.00
39881877--39882219	181	1.9	182	89	3	530	25	23	23	27	2.00
39882067--39882281	50	4.5	50	68	15	148	25	23	20	30	1.99
39882184--39882261	40	2.0	40	94	0	138	28	24	19	28	1.98
39890220--39890259	20	2.0	20	100	0	80	30	15	25	30	1.95
39893525--39893580	28	2.0	28	82	6	69	58	3	5	32	1.37
39893621--39893698	3	24.7	3	77	14	77	62	5	5	26	1.37
39893621--39893698	22	3.5	21	77	11	77	62	5	5	26	1.37
39899932--39899961	16	1.9	15	93	6	51	70	13	3	13	1.30
39899993--39900022	15	2.0	15	93	0	51	66	10	0	23	1.21
39901683--39902170	44	11.2	43	67	13	194	28	25	17	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39901573--39902170	131	4.6	131	88	0	883	27	25	18	28	1.98
39914308--39914354	4	12.0	4	86	4	69	72	4	0	23	1.02
39915191--39915228	12	3.3	12	85	14	62	81	5	7	5	0.98
39915191--39915236	22	2.2	20	92	7	74	82	4	8	4	0.93
39915191--39915236	21	2.1	21	96	4	83	82	4	8	4	0.93
39918014--39918049	18	1.9	18	88	5	54	58	2	0	38	1.13
39919028--39919079	17	3.0	17	91	5	86	46	11	13	28	1.78
39919833--39919902	7	10.0	7	78	15	65	0	18	0	81	0.69
39919824--39919902	28	3.1	27	78	17	105	0	18	0	81	0.70
39919825--39919909	23	3.7	23	79	16	97	0	21	0	78	0.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185