genome.fa.s5.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  121  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37382941--37383292	132	2.7	132	87	1	499	30	19	23	25	1.98
37383296--37383499	44	4.6	44	89	0	264	27	20	22	29	1.98
37383344--37383522	44	4.1	44	89	2	202	29	17	22	30	1.97
37383336--37383522	88	2.1	88	82	3	225	29	18	21	29	1.97
37385008--37385052	13	3.7	12	82	11	56	31	4	0	64	1.13
37384996--37385041	13	3.3	14	84	9	58	32	2	4	60	1.28
37385007--37385094	16	5.5	17	68	24	50	34	2	1	62	1.15
37388330--37388376	18	2.6	18	93	0	76	31	14	8	44	1.76
37394402--37394446	21	2.1	21	95	0	81	24	33	17	24	1.96
37395248--37395312	31	2.1	31	88	0	94	32	10	13	43	1.79
37396030--37396059	15	1.9	16	93	6	53	30	3	0	66	1.07
37396068--37396225	77	2.1	77	95	2	282	27	26	12	34	1.92
37397872--37397996	6	20.8	6	74	6	101	16	3	62	18	1.46
37397872--37397977	24	4.4	24	80	4	115	16	2	62	17	1.45
37397872--37398028	12	13.1	12	75	9	88	15	3	61	20	1.47
37399274--37399333	6	10.0	6	83	0	75	3	15	51	30	1.59
37399280--37399345	30	2.2	30	91	0	114	4	15	53	27	1.61
37399272--37399380	36	3.1	34	77	10	71	6	11	52	29	1.63
37403031--37403083	27	2.0	27	82	14	65	64	3	3	28	1.28
37405004--37405043	20	2.0	20	85	9	55	22	30	15	32	1.94
37409183--37409306	37	3.3	37	82	2	131	16	12	30	40	1.85
37409968--37410024	20	2.8	20	78	5	62	56	1	0	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37410128--37410179	11	5.2	10	76	15	54	34	1	0	63	1.06
37411820--37411875	22	2.6	22	88	2	78	14	39	30	16	1.88
37414196--37414319	35	3.5	35	86	2	169	41	29	10	19	1.84
37415232--37415273	6	7.0	6	97	0	75	0	2	16	80	0.81
37415905--37416002	23	4.5	23	83	7	116	52	1	3	43	1.23
37415901--37415948	20	2.6	18	81	12	60	50	2	2	45	1.25
37415923--37416000	21	3.6	21	84	8	102	52	1	3	42	1.27
37416514--37416557	20	2.1	21	91	4	72	36	43	2	18	1.63
37417208--37417253	20	2.2	21	84	7	58	67	10	2	19	1.31
37419623--37419752	38	3.3	38	75	18	140	63	0	2	33	1.07
37420647--37420757	57	2.0	56	89	1	168	35	17	20	27	1.95
37422654--37422718	24	2.6	25	70	7	60	70	3	3	23	1.15
37424932--37424959	7	4.0	7	100	0	56	28	28	0	42	1.56
37426868--37426898	5	6.2	5	100	0	62	58	19	0	22	1.40
37432678--37432721	9	5.4	8	84	13	54	65	2	0	31	1.05
37432869--37432927	12	4.6	13	78	18	52	59	3	0	37	1.14
37432892--37432926	15	2.3	16	90	9	56	60	5	0	34	1.21
37432869--37432919	3	16.7	3	76	11	50	58	1	0	39	1.09
37434311--37434763	44	10.7	43	66	18	243	26	22	22	28	1.99
37434224--37434766	127	4.3	127	98	0	1005	26	23	22	27	1.99
37434355--37434716	83	4.3	84	70	13	285	27	23	22	26	1.99
37446584--37446642	12	4.6	13	78	18	52	59	3	0	37	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37446607--37446641	15	2.3	16	90	9	56	60	5	0	34	1.21
37446584--37446634	3	16.7	3	76	11	50	58	1	0	39	1.09
37456356--37456393	19	2.0	19	100	0	76	26	26	15	31	1.96
37463450--37463493	20	2.2	20	88	4	63	43	0	0	56	0.99
37464510--37464543	14	2.4	14	90	0	59	26	29	5	38	1.80
37466181--37466229	23	2.1	23	81	11	55	48	14	2	34	1.55
37471992--37472191	109	1.9	108	86	5	289	33	19	17	29	1.95
37472706--37472751	21	2.2	21	84	7	58	52	0	0	47	1.00
37473325--37473349	9	2.8	9	100	0	50	92	0	8	0	0.40
37474136--37474641	44	11.6	44	71	11	255	26	22	21	30	1.99
37474070--37474723	44	15.3	42	69	14	238	26	23	20	29	1.99
37474052--37474379	170	1.9	169	90	3	516	26	23	20	29	1.99
37474131--37474646	213	2.4	216	83	5	614	26	22	21	29	1.99
37474383--37474715	175	1.9	175	93	1	578	26	24	18	30	1.98
37474349--37474723	87	4.3	85	73	8	306	26	23	20	29	1.99
37476011--37476057	7	7.0	7	85	9	71	12	17	0	70	1.17
37476011--37476073	23	3.0	20	86	11	74	12	17	0	69	1.18
37476017--37476073	13	4.6	13	82	12	75	12	17	0	70	1.17
37476952--37477009	13	4.5	13	76	4	55	8	3	3	84	0.85
37476978--37477021	21	2.1	21	86	0	61	13	4	2	79	0.98
37481059--37481367	109	2.9	109	92	2	491	34	19	16	30	1.93
37481880--37481908	3	9.7	3	100	0	58	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37485804--37485956	35	4.3	35	90	7	238	40	28	12	18	1.87
37485804--37485956	70	2.2	71	93	2	263	40	28	12	18	1.87
37490139--37490163	10	2.5	10	100	0	50	72	8	0	20	1.10
37491011--37491046	13	2.8	13	91	0	63	16	8	38	36	1.79
37503421--37503619	50	3.8	50	86	4	245	21	29	23	26	1.99
37503719--37503743	13	1.9	13	100	0	50	48	8	12	32	1.69
37504920--37504973	27	2.0	27	96	0	99	14	16	25	42	1.87
37508408--37508474	34	1.9	35	87	3	100	31	8	14	44	1.76
37518542--37518566	3	8.3	3	100	0	50	32	32	0	36	1.58
37528027--37528069	22	2.0	21	82	13	52	48	0	0	51	1.00
37533509--37533579	24	3.0	24	85	0	88	19	33	0	46	1.50
37536383--37536425	16	2.8	17	80	20	58	37	0	0	62	0.95
37537596--37537669	31	2.5	28	74	8	76	44	6	6	41	1.57
37537596--37537670	29	2.5	31	73	14	77	45	6	6	41	1.57
37538791--37538853	30	2.1	30	87	0	90	55	14	3	26	1.54
37545870--37545902	17	2.0	16	94	5	57	42	0	0	57	0.98
37546850--37546918	16	4.2	16	92	3	120	24	1	37	36	1.65
37546850--37546918	33	2.1	32	94	2	120	24	1	37	36	1.65
37546899--37546989	45	2.0	45	85	2	121	27	6	28	37	1.82
37547154--37547188	18	2.0	17	88	5	52	54	0	0	45	0.99
37547274--37547308	18	2.0	17	88	5	52	54	0	0	45	0.99
37547394--37547428	18	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37547137--37547662	120	4.4	120	96	1	932	48	4	2	43	1.38
37560838--37560979	33	4.3	33	99	0	275	34	5	16	42	1.72
37561022--37561103	37	2.2	37	88	0	119	34	9	15	40	1.81
37573792--37574061	142	1.9	142	86	3	382	37	23	15	23	1.93
37573753--37574090	72	4.7	73	83	3	357	35	23	15	24	1.94
37579093--37579184	41	2.2	41	92	0	148	29	21	20	28	1.98
37582543--37582638	39	2.5	39	100	0	192	36	7	32	23	1.83
37584270--37584295	3	8.7	3	100	0	52	69	0	0	30	0.89
37584471--37584514	23	1.9	23	95	0	79	9	47	25	18	1.77
37591056--37591098	18	2.4	18	88	0	59	18	25	11	44	1.84
37594654--37595077	126	3.4	126	90	1	663	25	20	20	33	1.97
37595215--37595357	43	3.1	43	68	19	110	36	18	2	43	1.62
37595114--37595430	95	3.4	93	81	9	362	38	17	2	41	1.64
37595114--37595475	95	3.9	94	78	8	240	39	16	3	40	1.64
37595114--37595475	189	1.9	184	81	5	422	39	16	3	40	1.64
37595554--37595579	6	4.3	6	100	0	52	38	46	0	15	1.46
37609499--37609528	15	2.0	15	93	0	51	26	36	16	20	1.93
37612588--37612636	24	2.0	25	84	11	66	69	2	12	16	1.28
37616677--37616713	15	2.4	16	82	13	51	51	2	5	40	1.39
37623898--37623947	26	1.9	26	84	8	66	72	10	14	4	1.26
37625410--37625452	21	2.0	21	91	8	70	23	11	11	53	1.69
37630495--37630528	14	2.3	15	90	5	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37630503--37630570	22	3.4	21	76	19	74	57	0	0	42	0.98
37630534--37630573	18	2.3	17	86	4	53	57	0	0	42	0.98
37632842--37633660	167	5.0	167	79	12	844	44	20	12	22	1.85
37633114--37633563	160	2.8	155	79	13	483	45	18	12	23	1.83
37634560--37634588	5	5.8	5	100	0	58	0	17	0	82	0.66
37634891--37634930	20	2.0	20	85	9	55	27	12	2	57	1.48
37637789--37637845	14	3.9	14	73	17	53	57	1	8	31	1.39
37640775--37640806	3	10.7	3	100	0	64	31	0	0	68	0.90
37640949--37641002	26	2.0	27	82	3	65	35	9	1	53	1.44
37641052--37641097	20	2.3	20	78	17	51	39	4	2	54	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185