genome.fa.s5.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  118  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36632726--36632788	24	2.7	23	78	9	65	50	1	0	47	1.10
36632713--36632788	24	3.2	23	76	9	64	51	1	0	47	1.09
36632743--36632791	20	2.5	20	76	6	55	53	2	0	44	1.12
36634942--36634984	20	2.2	20	91	0	68	30	30	2	37	1.70
36640328--36640538	106	2.0	106	97	0	395	34	26	9	30	1.87
36656714--36656780	29	2.2	29	82	10	73	23	11	10	53	1.68
36659438--36659486	18	2.8	18	84	12	66	48	2	6	42	1.39
36661968--36662034	33	2.0	33	97	0	125	41	14	22	20	1.89
36666870--36666921	24	2.2	24	89	0	77	50	7	3	38	1.50
36671247--36671298	24	2.2	24	89	0	77	50	7	3	38	1.50
36672808--36672838	16	1.9	16	100	0	62	25	0	38	35	1.56
36673074--36673108	18	2.0	17	88	5	52	54	0	0	45	0.99
36672961--36673276	156	2.0	157	95	0	571	42	3	5	48	1.42
36673210--36673264	15	3.4	16	80	16	53	50	1	0	47	1.11
36673230--36673264	18	2.0	17	88	5	52	54	0	0	45	0.99
36673426--36673473	26	1.9	25	84	16	64	52	2	0	45	1.12
36679172--36679216	2	22.5	2	100	0	90	0	48	0	51	1.00
36687819--36687857	19	2.1	19	100	0	78	33	15	20	30	1.94
36700800--36700845	22	2.1	21	84	8	56	34	15	4	45	1.66
36705256--36705309	26	2.1	25	93	3	90	35	25	20	18	1.95
36710017--36710055	14	2.8	14	84	0	51	41	5	2	51	1.38
36713040--36713073	10	3.3	10	91	4	50	11	2	0	85	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36726734--36726860	37	3.4	37	83	4	166	20	14	28	37	1.91
36737260--36737293	11	3.1	11	88	12	52	29	0	23	47	1.52
36738922--36738951	15	1.9	16	93	6	53	80	3	10	6	1.01
36742781--36742821	9	4.6	9	84	9	57	34	0	26	39	1.57
36742920--36743331	155	2.7	154	86	1	529	24	18	24	31	1.98
36745926--36746016	33	2.9	30	83	9	94	27	25	27	19	1.99
36746130--36746198	26	2.7	26	88	0	93	37	24	23	14	1.92
36746375--36746707	27	12.3	27	81	5	343	23	16	17	42	1.88
36746375--36746713	54	6.3	55	85	4	440	23	16	17	42	1.89
36746375--36746707	81	4.1	80	83	3	407	23	16	17	42	1.88
36747617--36747656	18	2.2	19	91	8	66	72	2	25	0	0.97
36754994--36755040	21	2.2	22	85	11	62	53	6	2	38	1.39
36755304--36755349	22	2.1	22	100	0	92	39	52	4	4	1.41
36755299--36755360	22	2.5	26	77	22	87	38	48	6	6	1.55
36755722--36755752	11	2.8	11	95	0	53	12	0	3	83	0.75
36761778--36761820	21	2.0	21	86	0	59	72	0	25	2	0.97
36763882--36764436	44	11.9	44	68	15	226	33	18	20	26	1.96
36763928--36764109	98	1.9	97	80	6	215	33	19	19	27	1.96
36763884--36764454	142	4.0	142	97	0	1034	33	19	20	26	1.96
36764622--36765098	50	9.5	50	71	3	357	33	23	19	24	1.97
36764615--36765107	100	4.9	100	88	1	684	33	23	19	24	1.97
36764501--36765107	200	3.1	199	85	3	764	31	23	19	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36767785--36767818	17	2.0	17	100	0	68	29	11	35	23	1.90
36770432--36770467	17	2.1	17	89	0	54	72	2	19	5	1.17
36770439--36770499	22	2.8	20	74	13	59	67	4	24	3	1.26
36771322--36771461	40	3.5	41	73	11	121	27	17	22	31	1.97
36783119--36783146	10	2.8	10	100	0	56	10	17	0	71	1.14
36783541--36783588	23	2.1	23	84	7	62	10	6	22	60	1.52
36784496--36784547	25	2.1	24	82	10	61	28	1	1	67	1.12
36785488--36785512	7	3.6	7	100	0	50	16	0	28	56	1.41
36786093--36786129	18	2.1	18	94	0	65	27	24	5	43	1.76
36789586--36790231	125	5.1	126	92	0	990	28	17	16	37	1.91
36789583--36790231	251	2.6	252	90	1	1005	28	17	16	37	1.91
36790291--36790375	35	2.5	35	88	5	120	45	8	0	45	1.33
36790291--36790429	34	4.0	34	79	8	120	43	12	0	44	1.41
36790395--36790453	27	2.1	28	87	9	86	37	11	0	50	1.39
36790481--36790527	23	2.1	22	84	11	60	53	36	0	10	1.36
36804445--36804489	19	2.4	19	85	3	56	46	2	0	51	1.13
36810012--36810107	48	2.0	48	93	0	165	56	5	23	14	1.59
36811901--36811962	24	2.6	24	75	17	65	41	4	12	40	1.65
36813799--36813827	14	2.0	15	93	6	51	0	17	0	82	0.66
36813799--36813827	5	6.0	5	92	8	51	0	17	0	82	0.66
36814317--36814437	63	1.9	63	83	3	154	28	24	25	21	1.99
36819358--36819708	126	2.8	124	85	3	447	29	15	21	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36819361--36819708	123	2.8	127	85	3	447	29	15	21	33	1.95
36829614--36829680	32	2.1	32	86	10	93	22	46	0	31	1.52
36844602--36844651	23	2.2	23	92	0	82	32	24	32	12	1.91
36849332--36849394	27	2.3	28	83	8	85	17	22	3	57	1.54
36851702--36851729	6	4.7	6	100	0	56	35	64	0	0	0.94
36852809--36853400	300	2.0	293	79	8	626	39	9	14	36	1.78
36861420--36861461	19	2.2	20	82	4	50	33	7	0	59	1.25
36865317--36865341	13	1.9	13	100	0	50	48	0	0	52	1.00
36865291--36865380	29	3.0	31	75	14	82	56	3	1	38	1.23
36868716--36868746	15	2.1	15	100	0	62	48	6	6	38	1.55
36872138--36872236	50	2.0	50	89	0	153	25	23	33	18	1.97
36874475--36874542	25	2.7	25	86	2	82	32	20	23	23	1.98
36874560--36874614	24	2.3	24	80	0	65	27	21	29	21	1.99
36874603--36874677	27	2.9	27	76	11	84	36	20	25	18	1.95
36874603--36874681	26	3.0	26	71	14	72	36	18	24	20	1.95
36876364--36876408	15	2.9	16	83	9	58	62	0	4	33	1.15
36876364--36876413	16	3.3	15	83	8	57	62	2	4	32	1.25
36877290--36877336	19	2.5	20	86	6	62	78	2	14	4	0.99
36878499--36878532	12	2.7	13	95	4	61	58	0	0	41	0.98
36879833--36879901	20	3.5	20	88	7	88	36	1	8	53	1.41
36881060--36881093	12	2.7	13	95	4	61	58	0	0	41	0.98
36882394--36882462	20	3.5	20	88	7	88	36	1	8	53	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36884793--36884834	22	1.9	22	85	0	57	4	23	2	69	1.20
36886572--36886703	47	2.8	47	77	7	126	29	18	26	25	1.98
36893973--36894078	54	2.0	54	90	0	167	24	17	34	22	1.96
36893989--36894098	54	2.0	54	83	0	139	24	21	33	20	1.97
36896941--36897002	7	8.6	7	77	11	63	35	0	0	64	0.94
36896941--36897002	15	4.3	14	78	11	63	35	0	0	64	0.94
36896941--36897009	22	3.1	22	69	23	56	34	0	0	65	0.93
36898568--36898631	21	3.2	20	77	16	62	45	0	1	53	1.10
36898665--36898711	24	1.9	25	82	4	60	51	2	2	44	1.25
36898960--36899002	22	2.0	22	81	9	52	34	0	0	65	0.93
36906521--36906560	20	2.0	20	95	0	71	62	0	0	37	0.95
36907075--36907261	53	3.5	53	80	9	150	36	21	21	20	1.95
36907073--36907264	27	7.2	27	81	3	176	36	21	21	19	1.95
36907118--36907272	53	2.9	53	82	4	170	35	21	21	20	1.96
36907191--36907273	26	3.2	26	81	8	105	34	21	20	22	1.96
36907169--36907283	26	4.4	26	75	10	101	34	18	25	21	1.96
36907333--36907403	24	2.9	24	97	2	133	14	4	28	53	1.59
36907483--36907542	27	2.2	27	82	11	70	20	23	23	33	1.97
36907540--36907595	26	2.2	26	83	0	67	14	17	30	37	1.90
36907586--36907800	32	6.7	32	77	8	179	20	20	21	36	1.95
36907583--36907800	96	2.3	96	82	9	284	20	21	21	36	1.95
36907870--36907922	26	2.0	26	85	0	70	18	26	22	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36912258--36912301	22	2.0	21	82	4	52	65	0	2	31	1.05
36912608--36912639	6	5.3	6	100	0	64	34	65	0	0	0.93
36912875--36912919	19	2.2	21	84	11	58	35	0	2	62	1.08
36915710--36915761	20	2.5	20	81	12	61	63	7	5	23	1.43
36920410--36920451	18	2.3	19	80	12	52	28	7	2	61	1.35
36929128--36929178	25	2.0	25	100	0	102	50	15	7	25	1.71
36933917--36933954	3	13.0	3	94	5	69	68	0	0	31	0.90
36934043--36934225	3	61.0	3	98	0	357	66	0	0	33	0.96
36939165--36939196	16	2.0	16	93	0	55	71	0	6	21	1.07
36940670--36941397	44	16.5	44	61	18	156	28	25	19	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185