genome.fa.s5.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  65  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20489393--20489508	61	2.0	60	86	5	164	50	6	2	41	1.41
20489451--20489593	67	2.1	71	80	9	161	49	4	4	41	1.41
20489857--20489898	19	2.2	19	86	0	57	9	21	23	45	1.81
20504355--20504404	21	2.3	21	79	3	55	20	18	16	46	1.85
20511787--20511943	81	1.9	81	100	0	314	26	23	21	29	1.99
20518728--20518768	21	2.0	21	90	0	64	60	2	2	34	1.23
20518739--20518819	21	3.9	21	74	19	73	59	0	3	37	1.15
20518814--20518859	17	2.7	17	86	0	65	58	0	0	41	0.98
20523461--20523512	27	1.9	27	96	0	95	73	3	3	19	1.15
20524045--20524090	20	2.3	20	84	0	56	15	10	6	67	1.40
20525201--20525254	21	2.5	20	82	11	63	31	1	18	48	1.59
20525310--20525352	21	2.0	21	100	0	86	13	0	27	58	1.37
20530708--20530757	20	2.7	19	80	20	61	50	6	2	42	1.38
20530832--20531194	180	2.0	180	89	1	548	25	29	20	23	1.99
20531711--20531893	86	2.2	84	84	5	226	32	27	16	23	1.96
20531668--20531893	43	5.3	42	81	6	181	32	26	17	24	1.97
20537080--20537231	41	3.7	41	83	2	191	19	22	30	28	1.98
20537565--20537601	14	2.6	14	95	0	65	21	0	29	48	1.50
20537702--20537746	22	2.1	21	83	4	54	33	0	35	31	1.58
20537739--20537786	26	1.9	24	83	8	60	25	0	29	45	1.53
20537843--20537877	6	5.8	6	90	10	54	2	0	45	51	1.16
20537843--20537877	11	2.9	12	91	8	54	2	0	45	51	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20537816--20537879	6	10.0	7	79	16	52	9	1	46	42	1.45
20537816--20537877	13	4.9	13	80	13	51	8	1	46	43	1.42
20541877--20542016	43	3.3	43	81	2	156	27	15	27	28	1.96
20542331--20542378	21	2.3	22	78	10	55	37	33	0	29	1.58
20542366--20542407	14	2.9	14	82	6	57	33	33	2	30	1.71
20542673--20542721	14	3.4	14	88	5	71	42	34	0	22	1.54
20543067--20543507	41	10.8	41	82	0	445	31	28	17	22	1.97
20546613--20547171	115	4.9	112	76	8	482	31	18	22	26	1.97
20546630--20547171	229	2.4	229	79	3	561	32	19	22	26	1.97
20549019--20549354	43	7.8	43	85	4	399	22	29	19	28	1.98
20549548--20549604	19	3.0	19	92	0	96	61	0	8	29	1.26
20549707--20549755	21	2.3	21	82	0	62	2	40	18	38	1.62
20550194--20550226	13	2.4	14	90	5	50	69	12	0	18	1.18
20555312--20555603	9	34.0	9	72	14	233	32	2	19	45	1.62
20555301--20555405	25	4.2	25	78	9	115	32	2	18	46	1.63
20555316--20555603	34	8.4	34	72	14	179	31	2	19	46	1.62
20555339--20555563	59	3.8	58	82	8	238	32	2	20	45	1.63
20555414--20555560	16	9.2	16	68	21	69	29	1	21	47	1.59
20555479--20555535	19	3.1	19	82	12	57	31	0	19	49	1.49
20555496--20555603	43	2.5	41	84	8	144	30	0	20	49	1.49
20557929--20557980	27	1.9	27	84	0	68	48	9	0	42	1.36
20558048--20558076	10	2.9	10	100	0	58	41	17	0	41	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20560205--20560272	15	4.9	14	71	16	52	41	35	0	23	1.55
20560208--20560245	15	2.5	15	86	0	58	36	42	0	21	1.53
20560774--20561036	41	6.4	41	76	4	262	36	21	25	16	1.94
20560796--20561035	82	2.9	81	87	2	345	35	22	25	16	1.94
20561074--20561208	40	3.4	38	76	7	117	17	22	22	37	1.94
20564180--20564519	9	37.4	9	82	4	405	50	15	0	32	1.50
20570032--20570082	21	2.4	21	86	0	66	33	19	43	3	1.70
20570458--20570572	43	2.7	43	77	6	115	29	19	22	28	1.98
20570567--20570674	42	2.6	42	77	5	112	36	19	17	26	1.94
20573325--20573403	26	3.0	26	73	10	79	49	2	2	45	1.29
20575634--20575668	17	2.0	18	94	5	63	57	0	11	31	1.34
20575639--20575677	17	2.2	17	90	4	60	61	0	12	25	1.31
20577139--20577168	15	2.1	14	93	6	51	86	0	13	0	0.57
20577633--20577707	30	2.4	30	80	8	89	64	0	5	30	1.16
20577948--20578018	28	2.5	28	100	0	142	26	8	4	60	1.44
20577997--20578039	19	2.3	19	87	0	59	25	6	4	62	1.40
20584510--20584559	6	8.3	6	95	0	91	66	16	2	16	1.35
20584556--20584604	3	16.3	3	95	0	89	65	0	2	32	1.04
20584514--20584601	12	7.3	12	85	10	62	64	7	2	25	1.32
20592163--20592200	17	2.3	16	83	16	51	73	0	0	26	0.83
20594127--20594167	18	2.2	19	91	4	66	58	0	0	41	0.98
20594135--20594167	5	7.0	5	86	13	52	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20594135--20594167	9	3.5	10	88	12	52	60	0	0	39	0.97
20594503--20594538	2	18.0	2	100	0	72	50	0	0	50	1.00
20594805--20594837	15	2.1	16	88	11	50	60	0	6	33	1.21
20595092--20595159	24	2.9	24	72	16	61	52	1	0	45	1.09
20596142--20596322	75	2.3	75	83	8	229	25	6	12	56	1.58
20601918--20601958	22	1.9	22	85	5	57	29	9	2	58	1.43
20606995--20607231	46	5.1	46	86	4	325	42	17	13	27	1.86
20614301--20614353	23	2.4	22	76	20	56	9	18	1	69	1.25
20616882--20617012	40	3.2	40	87	1	172	32	26	15	25	1.95
20623354--20623634	46	6.1	46	86	2	386	41	17	14	26	1.88
20624330--20624465	41	3.3	40	85	7	166	33	25	16	25	1.96
20624351--20624465	40	2.8	42	88	3	155	32	27	16	23	1.96
20624330--20624486	41	3.9	39	82	5	154	32	24	15	26	1.96
20629659--20629743	44	1.9	45	90	4	138	43	2	3	50	1.32
20629660--20629742	23	3.7	23	68	14	64	43	2	3	50	1.32
20632095--20632135	21	1.9	22	85	5	57	48	0	2	48	1.14
20635602--20635747	40	3.7	40	86	3	188	25	27	23	23	2.00
20643535--20643626	39	2.3	39	88	5	132	25	28	22	23	2.00
20643516--20643679	40	4.1	40	80	10	176	24	27	23	25	2.00
20645660--20645691	16	2.0	16	93	0	55	31	0	9	59	1.29
20649086--20649129	23	1.9	23	95	0	79	27	4	25	43	1.74
20649614--20649655	21	2.0	21	100	0	84	52	19	9	19	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20656252--20656408	43	3.6	44	82	4	171	27	14	25	32	1.95
20656237--20656413	42	4.1	41	76	17	155	27	13	24	33	1.93
20656267--20656425	85	1.8	86	81	9	198	28	13	25	32	1.93
20656289--20656453	42	3.9	42	78	6	149	28	12	26	32	1.93
20659618--20659717	11	9.9	11	68	23	51	58	0	2	40	1.10
20659603--20659735	38	3.3	38	83	11	160	62	0	1	36	1.05
20659720--20659744	8	3.1	8	100	0	50	84	0	0	16	0.63
20660149--20660235	43	2.0	43	93	0	147	21	26	1	50	1.56
20660877--20660924	25	2.0	24	87	4	69	33	10	0	56	1.34
20661393--20661447	23	2.3	23	78	9	58	43	1	1	52	1.22
20668158--20668197	21	2.0	20	86	13	57	20	20	2	57	1.52
20679959--20679998	20	1.9	21	85	10	55	55	12	7	25	1.63
20686222--20686284	32	2.0	32	100	0	126	33	19	9	38	1.84
20695367--20695426	27	2.2	27	93	0	102	36	20	15	28	1.92
20706527--20706563	9	4.1	9	85	0	56	48	13	8	29	1.71
20711030--20711095	29	2.2	30	86	10	100	31	1	0	66	1.01
20711043--20711102	28	2.1	28	81	6	68	38	0	0	61	0.96
20711190--20711238	23	2.2	21	82	13	55	73	0	2	24	0.94
20711191--20711254	29	2.2	30	85	2	85	70	1	4	23	1.15
20711773--20711810	19	2.0	20	89	5	60	52	2	0	44	1.14
20711764--20711826	28	2.2	28	83	8	83	57	3	0	39	1.15
20712158--20712202	18	2.5	18	79	10	56	22	2	2	73	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20712746--20712776	15	2.0	16	93	6	55	70	0	0	29	0.87
20714186--20714250	30	2.2	30	91	0	112	27	29	3	40	1.71
20717306--20717496	41	4.6	41	96	0	328	25	21	27	25	2.00
20729263--20729317	2	28.0	2	76	10	51	47	3	5	43	1.44
20729984--20730092	41	2.6	41	91	1	164	23	22	28	25	1.99
20730942--20730976	18	1.9	18	94	0	61	25	28	5	40	1.78
20730941--20730983	18	2.4	18	84	0	59	25	27	4	41	1.75
20731382--20731438	25	2.3	23	81	18	71	42	0	5	52	1.24
20734335--20735475	125	9.1	126	87	2	1534	28	17	16	37	1.91
20734335--20735475	251	4.6	250	86	2	1501	28	17	16	37	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185