genome.fa.s5.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  168  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50383158--50383210	24	2.3	22	90	6	79	22	41	0	35	1.54
50384211--50384435	62	3.6	62	99	0	441	42	15	11	31	1.81
50384810--50384853	18	2.4	18	88	0	61	13	2	43	40	1.57
50385135--50385193	26	2.3	26	96	0	109	38	15	3	42	1.63
50385896--50385989	43	2.2	44	86	5	129	31	19	25	23	1.98
50395318--50395566	50	4.8	50	82	4	257	21	28	23	26	1.99
50395317--50395567	100	2.4	104	86	6	332	21	28	23	26	1.99
50395661--50395692	13	2.5	13	94	0	55	56	12	0	31	1.37
50395904--50395960	30	1.9	29	85	3	78	31	24	1	42	1.65
50397368--50397398	14	2.1	15	94	5	55	77	0	9	12	0.99
50400724--50400763	21	1.9	21	84	0	53	52	10	5	32	1.56
50402070--50402122	19	2.7	20	77	11	56	41	1	1	54	1.22
50402738--50402853	11	11.5	11	78	21	139	55	0	0	43	1.05
50402749--50402853	40	2.7	40	79	15	132	55	0	0	44	0.99
50402828--50402910	40	2.1	39	88	6	123	62	0	0	37	0.95
50402727--50402884	29	5.4	29	94	1	253	56	0	0	42	1.03
50402749--50402842	18	5.0	18	80	12	109	55	0	0	44	0.99
50403368--50403411	6	7.3	6	100	0	88	31	36	15	15	1.90
50409276--50409315	17	2.2	19	86	8	57	17	12	0	70	1.18
50409836--50409942	38	2.8	38	89	0	160	27	12	16	43	1.83
50410679--50410737	16	3.9	16	79	16	56	66	1	6	25	1.26
50410834--50410950	58	2.0	59	93	1	200	35	8	10	45	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50415307--50415350	21	2.1	21	82	0	52	43	0	2	54	1.12
50415761--50415794	17	1.9	18	88	5	52	67	0	0	32	0.91
50424840--50424879	16	2.5	16	83	0	53	30	2	2	65	1.19
50427941--50427973	16	2.0	17	88	5	50	39	6	6	48	1.53
50437560--50437609	26	1.9	26	91	0	82	24	34	24	18	1.96
50438955--50439083	49	2.7	46	82	10	138	38	20	25	15	1.92
50438958--50439083	22	5.3	24	81	10	136	38	20	25	15	1.92
50439429--50439457	14	2.1	14	100	0	58	65	0	0	34	0.93
50440137--50440176	5	7.6	5	83	10	53	60	0	0	40	0.97
50440137--50440177	16	2.6	16	92	0	73	60	0	0	39	0.96
50440142--50440171	8	3.8	8	90	0	51	60	0	0	40	0.97
50454856--50455026	84	2.0	84	96	0	315	35	15	16	32	1.91
50455637--50455671	18	1.9	18	94	0	61	54	11	14	20	1.70
50458568--50458608	22	2.0	20	85	9	55	41	0	2	56	1.13
50462678--50462710	12	2.6	13	90	4	50	54	6	6	33	1.50
50468195--50468228	11	3.0	11	83	8	50	44	8	8	38	1.67
50468190--50468227	12	3.2	12	81	11	51	47	7	7	36	1.62
50469908--50469962	3	18.3	3	100	0	110	32	0	0	67	0.91
50474373--50474413	21	2.0	21	85	0	55	56	19	4	19	1.60
50485813--50485854	16	2.6	16	80	3	57	57	2	0	40	1.12
50486839--50486863	12	2.1	12	100	0	50	76	8	8	8	1.18
50487947--50488048	51	2.0	51	98	0	195	27	28	11	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50494340--50494384	23	2.0	23	90	0	72	42	22	6	28	1.79
50494843--50495324	256	1.9	256	98	1	932	39	14	11	35	1.82
50497469--50497537	3	23.0	3	100	0	138	33	0	0	66	0.92
50504704--50504729	3	8.7	3	100	0	52	69	0	0	30	0.89
50507292--50507331	13	3.1	13	85	0	53	32	7	22	37	1.82
50508035--50508081	23	2.2	20	77	22	60	48	17	0	34	1.47
50508040--50508088	23	2.1	23	100	0	98	46	16	0	36	1.47
50509402--50509441	20	2.0	20	90	0	62	30	10	10	50	1.69
50509387--50509453	34	1.9	35	84	3	91	32	8	10	47	1.69
50516289--50516644	33	10.5	33	69	24	192	31	27	19	20	1.97
50516316--50516649	102	3.3	102	95	0	596	31	27	20	20	1.97
50518555--50518597	22	2.0	22	85	0	59	55	16	27	0	1.41
50521256--50521323	16	4.2	16	88	0	109	27	0	32	39	1.57
50521559--50521593	18	2.0	17	88	5	52	54	0	0	45	0.99
50521679--50521713	18	2.0	17	88	5	52	54	0	0	45	0.99
50521542--50522644	120	9.2	120	99	0	2125	48	5	1	43	1.39
50521919--50521953	18	2.0	17	88	5	52	54	0	0	45	0.99
50527529--50527584	21	2.6	21	91	2	85	41	25	12	21	1.88
50528652--50528787	33	4.3	33	78	12	167	61	13	17	7	1.55
50528718--50528772	18	3.2	17	71	23	53	61	16	14	7	1.54
50542391--50542459	27	2.6	27	80	0	93	20	33	31	14	1.92
50543697--50543746	19	2.6	19	100	0	100	48	16	28	8	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50543748--50543814	27	2.5	27	85	0	89	10	31	34	23	1.89
50548870--50548914	23	2.0	23	95	0	81	28	24	22	24	1.99
50574958--50575009	25	2.1	25	85	0	68	28	5	9	55	1.55
50575437--50575511	6	13.0	6	84	8	102	33	0	0	66	0.92
50575640--50575886	84	2.9	83	78	9	257	31	9	10	47	1.70
50575669--50575885	86	2.6	85	82	4	251	30	10	10	49	1.69
50575905--50576078	85	2.0	84	83	4	215	47	10	9	32	1.70
50578079--50578119	11	3.7	11	80	0	55	29	17	0	53	1.44
50578828--50578868	18	2.2	18	87	12	57	26	2	9	60	1.40
50585345--50585390	24	1.9	24	100	0	92	45	6	0	47	1.28
50587154--50587192	3	13.0	3	100	0	78	33	33	0	33	1.58
50590796--50590863	34	2.0	34	91	2	111	54	10	4	30	1.54
50590898--50590951	17	3.5	17	69	23	55	61	5	5	27	1.41
50590898--50590958	29	2.1	29	93	0	104	59	4	4	31	1.40
50596263--50596332	30	2.2	32	87	5	99	55	0	2	41	1.14
50596287--50596369	30	2.7	31	85	3	98	42	2	2	53	1.27
50596306--50596369	31	2.1	31	88	2	94	35	3	3	57	1.30
50603913--50603974	30	2.0	31	87	3	90	50	3	1	45	1.27
50613230--50613277	24	2.0	25	83	4	62	64	8	0	27	1.22
50617948--50617980	11	3.0	11	95	0	57	9	27	33	30	1.88
50621106--50621147	21	2.0	21	95	0	75	38	16	21	23	1.93
50621862--50622008	37	4.0	37	92	1	235	25	22	15	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50621971--50622187	52	4.2	52	84	8	293	27	23	14	35	1.93
50621970--50622193	98	2.3	98	94	0	394	28	23	14	34	1.93
50628069--50628252	79	2.3	81	81	7	216	25	22	27	25	2.00
50628068--50628252	40	4.7	40	82	6	216	24	22	27	25	2.00
50628121--50628285	79	2.1	79	82	6	192	26	20	27	25	1.99
50636082--50636126	22	2.0	22	95	0	81	46	4	20	28	1.69
50639374--50639472	50	2.0	50	91	0	162	28	26	19	26	1.99
50639744--50639768	6	4.2	6	100	0	50	16	52	16	16	1.76
50641917--50641949	16	2.1	16	94	0	57	18	21	18	42	1.89
50642656--50642695	18	2.2	18	95	0	71	15	15	15	55	1.71
50657680--50657836	46	3.3	46	86	10	149	35	14	22	28	1.92
50657628--50657836	52	4.1	51	85	9	284	34	13	22	28	1.93
50657614--50657837	98	2.3	98	94	0	394	34	14	23	28	1.93
50657799--50657945	37	4.0	37	92	1	235	36	15	22	25	1.93
50659198--50659365	58	3.0	58	85	10	228	22	13	31	33	1.92
50659258--50659400	49	2.9	49	89	2	207	23	14	30	32	1.94
50667274--50667473	50	4.0	50	81	3	208	26	18	26	29	1.98
50669553--50669812	81	3.2	81	82	7	307	30	11	21	37	1.88
50669553--50669812	27	9.7	27	82	5	278	30	11	21	37	1.88
50670128--50670191	28	2.3	28	91	0	101	29	37	14	18	1.90
50677075--50677282	103	2.0	103	98	0	398	19	19	35	25	1.95
50680454--50680494	21	2.0	21	100	0	82	24	24	34	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50690314--50690510	108	1.8	109	92	1	333	31	9	17	41	1.82
50696486--50696533	20	2.4	20	73	13	53	39	22	2	35	1.66
50709137--50709218	43	1.9	43	95	2	148	47	13	6	32	1.67
50709250--50709288	19	2.1	19	90	4	62	41	12	2	43	1.56
50716365--50716417	24	2.2	24	86	0	70	56	7	1	33	1.38
50720919--50721022	51	2.0	51	81	7	122	38	17	4	39	1.71
50721150--50721189	19	2.1	19	85	4	53	12	62	0	25	1.30
50721289--50721321	12	2.8	12	90	4	50	54	0	3	42	1.15
50730600--50730624	5	5.0	5	100	0	50	80	0	20	0	0.72
50736890--50736928	3	13.0	3	100	0	78	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185