genome.fa.s5.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  165  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49329541--49329580	16	2.4	16	87	4	53	27	5	0	67	1.11
49329541--49329580	17	2.3	18	87	8	57	27	5	0	67	1.11
49330244--49330290	19	2.6	18	71	18	51	27	6	2	63	1.30
49338731--49338786	4	14.0	4	100	0	112	25	0	25	50	1.50
49341807--49341870	21	3.0	21	72	0	56	20	29	14	35	1.92
49341799--49341912	42	2.7	41	74	4	102	17	26	14	41	1.88
49343747--49343773	11	2.5	11	100	0	54	44	0	0	55	0.99
49344146--49344271	57	2.3	55	75	6	128	29	14	15	40	1.87
49355360--49355414	27	2.1	27	90	6	87	40	0	0	60	0.97
49356835--49356864	2	15.0	2	100	0	60	50	50	0	0	1.00
49361709--49361754	25	1.9	23	83	16	58	21	0	6	71	1.08
49362637--49362670	14	2.4	14	90	9	52	38	0	0	61	0.96
49366121--49366181	22	2.8	21	72	20	54	60	1	3	34	1.23
49366379--49366473	30	3.2	30	67	16	81	41	11	10	36	1.76
49366367--49366484	58	2.0	58	95	0	209	38	9	11	40	1.73
49366715--49366743	3	9.7	3	100	0	58	65	0	0	34	0.93
49370164--49370210	21	2.2	22	92	3	78	21	19	38	21	1.94
49372512--49372803	133	2.2	133	84	6	360	33	13	21	31	1.92
49377206--49377335	64	2.0	64	96	0	242	35	16	18	29	1.93
49381401--49381490	46	2.0	46	88	0	135	27	18	5	47	1.71
49382833--49382895	30	2.1	30	90	0	99	23	4	14	57	1.56
49383338--49383378	18	2.3	18	87	4	57	58	4	2	34	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49386347--49388047	588	2.9	587	84	4	2072	42	11	10	36	1.74
49386384--49387918	789	1.9	785	82	7	1872	41	11	10	36	1.74
49387330--49387918	201	2.9	199	85	3	734	40	10	11	37	1.76
49387884--49388514	174	3.7	173	86	6	829	42	11	9	35	1.74
49387882--49388514	341	1.8	342	85	6	888	42	11	9	35	1.74
49389382--49389415	2	17.0	2	93	0	59	0	47	0	52	1.00
49389404--49389897	247	2.0	247	100	0	988	25	19	22	33	1.97
49401379--49401411	16	2.0	17	88	5	50	27	0	0	72	0.85
49408693--49408724	12	2.8	12	95	4	57	65	0	0	34	0.93
49410698--49410738	22	1.9	21	85	5	55	4	14	14	65	1.42
49410961--49410991	15	2.1	14	94	5	53	70	0	0	29	0.87
49426156--49426194	6	6.5	6	93	0	51	0	28	5	66	1.12
49429875--49429907	17	2.0	17	94	5	50	48	12	15	24	1.78
49433216--49433253	18	2.1	18	85	9	51	52	15	10	21	1.72
49434231--49434283	20	2.7	19	77	11	54	64	3	1	30	1.22
49434363--49434408	19	2.5	18	80	16	58	52	2	2	43	1.25
49436035--49436101	33	2.0	33	97	0	125	20	17	14	46	1.84
49439978--49440011	9	3.8	9	88	0	50	41	35	23	0	1.55
49443390--49443457	33	2.1	33	100	0	136	38	30	0	30	1.58
49446772--49446822	24	2.2	24	83	10	63	54	9	5	29	1.56
49447059--49447092	3	11.3	3	87	0	50	67	0	2	29	1.05
49453205--49453269	3	21.7	3	96	0	121	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49458610--49458715	55	1.9	56	82	5	135	39	3	18	37	1.69
49465364--49465448	17	5.1	17	70	24	58	61	4	1	32	1.24
49486222--49486446	113	2.0	113	99	0	441	27	20	23	28	1.99
49487685--49487717	3	11.0	3	93	0	57	30	0	3	66	1.06
49489766--49489799	1	34.0	1	93	0	59	2	97	0	0	0.19
49498214--49498296	41	2.0	41	92	0	139	48	16	15	19	1.82
49501272--49501307	5	7.2	5	93	0	54	2	0	58	38	1.13
49504105--49504143	17	2.2	17	86	9	51	66	0	7	25	1.18
49504888--49504929	17	2.5	17	84	7	50	52	0	2	45	1.13
49504847--49504927	43	1.9	41	80	12	92	50	2	2	44	1.28
49529690--49529727	18	2.1	18	90	0	58	52	0	5	42	1.24
49535495--49535533	20	1.9	21	84	5	53	12	12	0	74	1.08
49537224--49537264	16	2.6	16	78	21	50	31	4	0	63	1.15
49542851--49542943	18	5.2	18	80	0	114	34	16	20	29	1.94
49542849--49542943	36	2.6	36	88	0	145	33	16	20	29	1.95
49544317--49544354	13	2.7	14	84	12	51	76	0	23	0	0.79
49547988--49548054	5	13.4	5	96	0	125	38	0	1	59	1.06
49548052--49548089	5	7.6	5	93	0	67	18	0	21	60	1.36
49549410--49549448	14	2.5	16	84	16	55	33	0	25	41	1.56
49550443--49550481	19	2.0	20	90	5	62	35	0	17	46	1.49
49553534--49553584	20	2.5	20	83	3	57	21	21	15	41	1.90
49553616--49553670	28	2.0	27	96	0	92	7	30	21	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49553661--49553725	21	3.2	21	65	12	64	15	26	20	38	1.92
49553658--49553743	39	2.2	39	100	0	172	16	26	22	34	1.95
49553682--49553745	18	3.4	18	67	12	56	18	26	21	32	1.97
49553890--49554028	71	2.0	71	89	0	215	41	7	17	33	1.77
49554013--49554228	107	2.0	107	99	0	423	48	5	16	30	1.68
49556712--49556896	93	2.0	93	97	0	352	27	20	9	42	1.83
49561315--49561350	18	2.0	18	88	0	54	44	0	0	55	0.99
49561304--49561357	16	3.3	16	75	12	56	55	0	0	44	0.99
49566811--49566840	2	15.0	2	100	0	60	50	0	50	0	1.00
49569325--49569357	16	2.1	16	88	11	50	51	0	0	48	1.00
49570841--49570879	18	2.1	19	85	4	53	25	15	15	43	1.86
49574431--49574469	3	13.0	3	88	0	60	35	2	0	61	1.10
49574633--49574698	3	22.0	3	80	6	62	27	1	6	65	1.25
49574662--49574769	12	8.7	12	72	22	57	23	1	3	71	1.12
49576664--49576709	19	2.4	19	89	7	67	21	19	10	47	1.80
49576673--49576715	19	2.2	20	83	4	52	27	16	9	46	1.77
49581380--49581441	31	2.0	32	84	9	83	48	6	0	45	1.28
49581955--49581983	13	2.1	14	93	6	51	44	3	0	51	1.18
49583299--49583327	14	2.0	15	93	6	51	82	0	17	0	0.66
49584168--49584604	44	9.7	43	69	14	242	32	17	20	30	1.95
49584157--49584605	180	2.5	181	88	2	672	32	17	20	29	1.95
49586206--49586365	3	53.0	3	73	8	119	31	6	1	60	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49586221--49586270	10	4.9	10	80	9	57	32	8	0	60	1.26
49586516--49586562	15	3.1	15	78	9	51	29	2	2	65	1.15
49588655--49588687	3	11.0	3	93	0	57	66	3	0	30	1.06
49591336--49591370	16	2.2	16	89	0	52	54	0	0	45	0.99
49591366--49591446	27	3.3	25	75	17	64	54	2	1	41	1.21
49591359--49591446	22	3.7	23	75	19	67	56	2	1	39	1.19
49591409--49591458	21	2.3	21	80	10	57	58	2	4	36	1.29
49591485--49591520	13	2.8	13	86	0	54	75	2	0	22	0.94
49591989--49592019	3	10.3	3	100	0	62	67	0	0	32	0.91
49595371--49595413	16	2.6	18	82	10	56	16	18	0	65	1.28
49599821--49599873	26	2.0	26	100	0	106	60	7	0	32	1.25
49603482--49603536	27	2.0	27	92	0	92	47	12	9	30	1.73
49605976--49606000	9	2.8	9	100	0	50	0	20	0	80	0.72
49607993--49608031	19	2.1	19	95	0	69	51	10	5	33	1.58
49608885--49608928	15	2.9	15	82	0	61	36	2	13	47	1.56
49609568--49609608	19	2.2	19	87	12	59	46	0	24	29	1.53
49609556--49609595	13	3.2	13	80	19	50	50	0	25	25	1.50
49614189--49614314	40	3.2	40	92	3	202	23	23	27	26	2.00
49617024--49617323	150	2.0	150	94	1	521	20	24	20	34	1.96
49627070--49627132	29	2.2	29	83	13	78	52	0	4	42	1.22
49627128--49627162	16	2.2	16	90	5	54	54	0	5	40	1.24
49633746--49633779	16	2.1	17	88	5	52	58	2	2	35	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49633884--49633920	19	2.1	17	90	10	56	35	0	0	64	0.94
49634588--49634625	20	1.9	20	88	0	58	65	2	0	31	1.06
49635760--49635817	28	2.1	28	100	0	116	34	0	6	58	1.25
49642552--49644425	938	2.0	936	98	0	3615	27	22	18	30	1.98
49645903--49646032	47	2.8	47	82	2	145	29	13	16	40	1.86
49659000--49659039	15	2.5	17	88	12	66	62	0	0	37	0.95
49662843--49662913	21	3.4	21	98	0	133	4	43	18	33	1.69
49668528--49668561	18	1.9	17	88	5	50	41	2	14	41	1.61
49679768--49679793	12	2.2	12	100	0	52	30	23	0	46	1.53
49700100--49700143	23	1.9	23	90	9	72	22	6	15	54	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185