genome.fa.s5.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  123  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37954768--37954820	5	10.6	5	100	0	106	39	0	0	60	0.97
37955042--37955073	16	1.9	17	93	6	57	75	0	25	0	0.81
37956076--37956180	45	2.3	45	85	3	131	20	16	19	44	1.86
37956160--37956207	6	7.8	6	78	2	51	14	22	18	43	1.87
37968035--37968276	126	1.9	126	88	3	371	25	26	16	32	1.96
37975432--37975491	23	2.6	23	76	19	63	25	0	6	68	1.14
37976884--37976963	42	1.9	43	82	10	103	30	27	17	25	1.97
37980296--37980467	73	2.4	72	85	4	238	22	26	25	26	2.00
37982364--37982394	3	10.3	3	92	0	53	32	3	0	64	1.09
38005314--38005381	16	4.2	16	73	14	50	36	1	4	57	1.28
38005325--38005450	16	7.6	16	68	19	55	42	3	3	50	1.36
38005326--38005459	68	2.0	68	86	5	191	42	2	5	49	1.40
38008784--38008846	33	1.9	33	90	6	101	25	44	9	20	1.82
38010658--38010698	17	2.5	17	84	11	59	56	0	2	41	1.13
38010656--38010707	18	3.0	17	86	11	70	51	0	1	46	1.12
38012508--38012545	19	2.0	19	100	0	76	26	10	15	47	1.78
38022910--38022976	35	1.9	34	82	8	82	56	4	4	34	1.39
38024944--38024980	19	1.9	19	94	0	65	35	0	18	45	1.50
38025192--38025367	41	4.3	41	91	0	280	29	19	27	23	1.98
38025192--38025361	82	2.1	82	98	0	331	29	18	28	23	1.98
38032592--38032628	19	1.9	19	94	0	65	35	0	18	45	1.50
38032839--38033015	41	4.3	41	91	0	282	29	19	27	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38032839--38033009	82	2.1	82	98	0	333	29	19	28	23	1.98
38046882--38046929	24	2.0	24	100	0	96	37	25	12	25	1.91
38049733--38049792	32	1.9	31	86	10	86	20	0	23	56	1.42
38053465--38053602	43	3.2	43	90	2	206	27	29	21	21	1.98
38056146--38056451	106	2.9	105	89	1	461	27	15	17	39	1.89
38056453--38056505	21	2.5	21	90	0	88	30	33	20	15	1.93
38056958--38057290	101	3.2	101	86	7	447	32	16	14	36	1.89
38056958--38057339	109	3.6	101	85	7	462	32	17	14	35	1.90
38056958--38057339	208	1.8	205	85	7	536	32	17	14	35	1.90
38064741--38064799	5	11.4	5	79	15	50	81	0	16	1	0.78
38064740--38064817	12	6.5	12	72	25	67	79	0	19	1	0.80
38064740--38064810	7	10.3	7	77	15	60	80	0	18	1	0.79
38065141--38065443	103	2.9	103	86	3	419	26	17	8	48	1.75
38066338--38066751	46	9.0	46	91	0	612	24	16	28	30	1.96
38066848--38067014	44	3.8	44	78	9	162	27	19	26	26	1.99
38067035--38067124	44	2.0	44	91	0	144	33	17	21	27	1.96
38067040--38067195	44	3.5	44	80	5	129	31	23	19	26	1.98
38067289--38067374	44	2.0	44	88	4	129	30	19	24	25	1.98
38072530--38072619	21	4.2	21	71	10	67	35	38	0	25	1.56
38072567--38072613	15	3.3	15	82	8	62	40	31	0	27	1.57
38072810--38072855	7	6.4	7	85	5	65	36	47	0	15	1.45
38072811--38072858	22	2.2	22	100	0	96	37	50	0	12	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38072825--38072887	21	3.0	20	80	13	56	38	44	0	17	1.49
38072878--38072904	14	1.9	14	100	0	54	37	37	0	25	1.57
38073272--38073435	41	4.0	40	84	1	175	32	29	17	20	1.96
38073296--38073465	41	4.2	40	78	6	144	32	31	17	19	1.95
38073508--38073594	40	2.2	40	87	8	124	27	19	14	37	1.91
38076035--38076082	25	2.0	24	83	4	60	41	10	10	37	1.74
38076294--38076364	37	2.0	35	83	10	90	54	2	2	39	1.29
38080487--38080551	34	1.9	33	84	9	87	29	7	6	56	1.51
38080936--38080974	19	2.0	19	85	5	51	48	12	5	33	1.63
38085132--38085264	51	2.6	50	79	2	149	29	23	28	18	1.98
38085528--38085576	20	2.5	20	81	15	66	57	6	24	12	1.58
38093477--38093513	16	2.3	17	86	9	51	24	8	13	54	1.66
38100215--38100252	14	2.5	15	87	12	60	60	0	39	0	0.97
38100212--38100258	14	3.1	15	79	14	53	63	0	36	0	0.94
38100212--38100258	17	2.8	17	75	12	51	63	0	36	0	0.94
38100419--38100603	22	9.0	20	71	20	107	30	1	12	54	1.48
38100412--38100603	41	4.7	38	72	21	113	31	1	13	53	1.48
38100412--38100506	19	4.8	19	79	8	91	32	1	11	54	1.43
38100543--38100657	19	6.1	19	71	18	89	32	0	13	53	1.45
38100584--38100657	27	2.7	27	93	0	130	33	0	12	54	1.38
38100698--38100819	60	2.0	60	85	3	165	30	0	14	54	1.47
38100853--38100934	38	2.2	38	95	0	146	54	2	2	40	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38100973--38101012	15	2.5	16	84	8	55	40	5	2	52	1.37
38102638--38102671	6	5.8	6	93	6	61	32	35	32	0	1.58
38117197--38117238	3	13.7	3	95	5	75	66	2	0	30	1.04
38118174--38118338	85	1.9	85	88	2	251	44	20	16	18	1.86
38125849--38125886	20	1.9	20	94	0	67	50	0	2	47	1.15
38125985--38126093	39	2.8	39	90	2	157	40	3	3	52	1.37
38125985--38126112	39	3.3	39	85	3	114	40	3	4	51	1.38
38139678--38139744	31	2.2	31	83	5	82	38	8	16	35	1.80
38141886--38141923	20	1.9	19	89	5	58	10	0	7	81	0.87
38144043--38144163	50	2.4	50	100	0	242	31	22	15	30	1.95
38153545--38153617	37	2.0	37	86	0	101	24	16	8	50	1.72
38156490--38156522	11	2.9	11	95	4	57	45	0	33	21	1.52
38159104--38159237	68	2.0	68	84	0	178	44	20	6	29	1.77
38159806--38159872	22	2.8	24	75	11	66	50	1	5	41	1.36
38167421--38167487	27	2.5	27	82	4	73	34	19	29	16	1.94
38171121--38171162	12	4.0	10	80	19	50	61	0	0	38	0.96
38174305--38174334	13	2.3	13	100	0	60	40	43	0	16	1.48
38174476--38174534	9	6.4	9	80	3	73	22	8	27	42	1.82
38174689--38174713	12	2.1	12	100	0	50	16	24	36	24	1.94
38175794--38175834	14	2.9	15	78	7	50	43	7	7	41	1.60
38175803--38175869	34	1.9	35	90	3	109	37	8	7	46	1.64
38176378--38176408	13	2.4	13	100	0	62	29	0	12	58	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38188772--38188974	46	4.3	48	88	7	265	35	14	21	28	1.92
38188706--38188974	98	2.7	98	93	0	457	34	14	22	28	1.93
38188938--38189083	37	4.0	37	93	1	242	36	16	21	24	1.94
38192759--38192802	22	2.0	21	83	12	54	50	11	15	22	1.76
38194356--38194422	29	2.3	29	75	10	66	50	4	2	41	1.37
38202581--38202650	26	2.7	26	74	22	67	60	2	2	34	1.26
38202698--38202735	11	3.5	11	86	13	60	50	10	0	39	1.37
38202690--38202747	22	2.7	22	75	15	68	37	13	3	44	1.61
38207904--38207986	3	28.7	3	69	20	52	61	1	6	31	1.28
38209041--38209083	20	2.2	20	83	8	52	6	4	46	41	1.51
38209374--38209615	44	5.7	41	75	7	214	26	21	23	28	1.99
38209379--38209629	129	1.9	129	94	0	439	25	21	23	29	1.99
38209374--38209646	44	6.3	43	73	11	175	26	21	22	29	1.99
38209626--38210385	50	15.2	49	69	9	469	23	20	23	32	1.98
38209626--38210423	100	8.0	100	87	2	985	23	21	23	31	1.98
38215620--38215714	26	3.4	27	76	15	70	58	3	8	29	1.43
38215693--38215728	16	2.2	16	95	0	63	55	2	0	41	1.14
38215854--38215894	17	2.4	17	88	8	57	65	0	4	29	1.13
38215865--38215943	12	6.6	11	72	16	52	64	1	7	26	1.28
38216784--38217192	205	2.0	204	97	0	764	20	17	30	31	1.95
38221329--38221361	17	1.9	17	100	0	66	42	9	0	48	1.35
38227399--38227512	31	3.7	32	76	10	98	59	0	3	36	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38227399--38227521	11	11.9	11	69	21	63	59	0	3	37	1.14
38227402--38227468	9	7.0	9	76	15	55	61	0	1	37	1.05
38227405--38227532	41	3.2	40	82	8	145	62	0	3	34	1.11
38228772--38228870	38	2.7	37	80	13	114	59	2	0	38	1.09
38228804--38228861	17	3.2	17	72	18	55	58	1	0	39	1.08
38229596--38229626	7	4.4	7	95	0	53	32	54	0	12	1.38
38230933--38230957	1	25.0	1	100	0	50	0	100	0	0	0.00
38231647--38231685	19	1.9	19	90	10	60	66	2	7	23	1.30
38232616--38233165	275	2.0	275	99	0	1091	25	23	22	28	1.99
38235374--38235415	21	1.9	22	85	9	59	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185