genome.fa.s5.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  150  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45433938--45434014	33	2.3	32	80	6	82	33	15	22	28	1.94
45447831--45447879	25	2.0	25	84	11	66	36	10	2	51	1.48
45453592--45453782	36	5.0	36	81	12	229	37	13	19	29	1.90
45453556--45453746	82	2.3	82	91	0	310	37	12	20	29	1.90
45457258--45457312	28	2.0	28	85	0	74	21	20	10	47	1.80
45457669--45457702	15	2.2	16	94	5	61	47	11	0	41	1.40
45466099--45466123	11	2.3	11	100	0	50	32	0	0	68	0.90
45471247--45471523	70	3.8	70	82	9	324	27	11	18	42	1.85
45471269--45471523	23	10.6	23	70	14	131	27	12	18	41	1.86
45471253--45471535	148	1.9	147	84	5	383	27	12	19	40	1.87
45471945--45472040	30	3.0	30	71	20	79	31	5	2	61	1.29
45480868--45480919	9	5.5	10	80	15	58	38	28	11	21	1.88
45480868--45480916	20	2.6	19	90	6	73	38	30	12	18	1.87
45480926--45481023	17	5.4	17	68	13	70	51	13	2	33	1.53
45480917--45481048	37	3.6	37	91	1	203	50	13	3	33	1.57
45480917--45481006	18	4.8	19	68	13	62	48	14	2	34	1.56
45483343--45483384	20	2.1	20	100	0	84	66	0	4	28	1.12
45484907--45484947	19	2.2	19	100	0	82	51	0	26	21	1.48
45486090--45486305	50	4.3	50	76	8	181	35	18	26	19	1.95
45486087--45486311	25	9.0	25	68	8	127	35	18	26	19	1.95
45486163--45486328	25	6.6	25	72	5	102	37	18	26	17	1.93
45486183--45486327	50	2.9	49	79	3	155	36	17	26	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45492730--45492764	18	2.0	17	88	5	52	45	0	0	54	0.99
45492886--45492920	18	2.0	17	88	5	52	45	0	0	54	0.99
45492886--45492943	16	3.6	16	78	21	52	44	0	1	53	1.10
45492718--45493033	156	2.0	157	95	0	571	47	5	3	43	1.41
45499014--45499059	20	2.2	21	84	3	58	34	10	19	34	1.87
45499860--45499905	21	2.2	21	88	0	65	56	17	21	4	1.58
45502828--45502862	6	5.8	6	100	0	70	82	0	0	17	0.66
45503284--45503837	114	4.9	113	93	1	910	26	20	26	26	1.99
45503284--45503837	227	2.4	228	92	1	914	26	20	26	26	1.99
45503737--45503895	73	2.2	73	89	0	237	25	21	24	28	1.99
45504249--45504292	17	2.7	17	89	6	65	29	0	27	43	1.55
45504573--45504610	14	2.7	15	84	12	53	26	0	28	44	1.54
45504640--45504688	14	3.4	14	81	13	64	24	2	40	32	1.67
45504630--45504701	29	2.5	30	71	15	78	25	1	37	36	1.65
45505107--45505207	47	2.2	46	90	3	157	48	7	0	43	1.32
45508322--45508351	14	2.1	14	100	0	60	23	43	0	33	1.54
45509516--45509545	15	2.0	15	93	0	51	50	0	33	16	1.46
45509779--45509812	16	2.1	16	88	0	50	35	0	2	61	1.11
45509884--45510063	43	4.2	43	84	3	191	26	18	27	27	1.98
45513595--45513634	21	1.9	21	94	0	71	17	35	17	30	1.93
45515362--45515397	18	2.1	18	89	5	56	66	2	8	22	1.31
45516538--45516577	17	2.4	17	88	12	57	10	2	15	72	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45516842--45517464	45	13.8	46	71	12	324	28	23	17	30	1.97
45517112--45517370	89	2.9	89	84	0	349	29	23	16	30	1.97
45517123--45517460	89	3.8	89	81	4	308	28	23	17	30	1.97
45518878--45519124	50	4.8	50	75	7	194	24	25	21	28	1.99
45521849--45522033	46	4.0	46	89	0	280	29	27	9	34	1.88
45523262--45523309	17	2.9	17	90	3	71	54	18	0	27	1.44
45531301--45531390	46	2.0	46	95	0	162	33	10	27	28	1.89
45536041--45536077	12	3.0	13	88	7	51	2	10	0	86	0.67
45541362--45541415	27	2.0	26	82	10	65	25	3	20	50	1.65
45551435--45551469	18	1.9	18	88	0	52	25	2	0	71	1.00
45560469--45560501	15	2.2	15	89	10	50	36	0	18	45	1.49
45563753--45563800	20	2.4	20	92	0	78	25	0	8	66	1.19
45567892--45568070	43	4.1	43	84	4	209	32	22	16	27	1.95
45567889--45568070	87	2.1	86	82	9	226	32	23	16	28	1.96
45573906--45574693	9	86.3	9	68	16	290	34	1	18	45	1.57
45573908--45574315	47	8.0	49	75	18	311	33	0	20	46	1.51
45573920--45574315	52	7.6	52	77	16	360	33	0	20	46	1.51
45573937--45574450	102	5.0	102	80	14	530	34	0	19	45	1.54
45574273--45574333	19	3.4	18	71	17	56	34	0	18	47	1.49
45574050--45574436	134	2.7	140	80	13	393	34	0	19	45	1.55
45574302--45574450	55	2.7	55	82	9	189	36	1	17	44	1.57
45574381--45574673	133	2.2	134	93	3	495	34	3	16	45	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45574610--45574734	18	6.9	18	71	12	103	37	0	16	45	1.53
45574888--45575181	73	4.0	73	92	4	498	48	7	9	34	1.64
45574888--45575181	151	2.0	146	93	3	498	48	7	9	34	1.64
45575340--45575472	66	2.0	64	88	2	194	51	13	2	32	1.53
45577583--45577630	24	2.0	24	84	8	62	54	0	37	8	1.31
45577282--45578017	368	2.0	368	100	0	1472	37	15	21	24	1.93
45577951--45577998	24	2.0	24	84	8	62	54	0	37	8	1.31
45579716--45580014	124	2.4	125	84	4	381	32	19	15	32	1.93
45579939--45580097	82	1.9	85	84	6	218	38	15	12	33	1.85
45580215--45580413	14	14.2	14	69	12	86	41	34	0	23	1.58
45580244--45580413	7	24.3	7	71	9	78	42	34	0	21	1.58
45580244--45580413	14	12.1	14	71	9	87	42	34	0	21	1.58
45580253--45580313	20	3.0	20	80	4	68	40	42	0	16	1.48
45580246--45580297	27	1.9	27	92	0	86	44	40	0	15	1.46
45580223--45580413	21	9.1	21	70	11	70	41	34	0	23	1.58
45580323--45580506	98	1.9	99	87	5	275	42	32	1	22	1.63
45580510--45580550	15	2.8	15	81	3	57	46	26	2	24	1.65
45583526--45583573	20	2.3	21	75	10	55	22	0	12	64	1.27
45584199--45584243	23	2.0	23	82	8	56	64	4	2	28	1.25
45584190--45584243	25	2.3	23	83	6	63	66	3	1	27	1.19
45584349--45584388	20	2.1	19	85	4	53	57	2	2	37	1.26
45621409--45621461	27	2.0	26	88	3	79	26	11	26	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45629313--45629382	16	4.4	16	90	0	104	38	2	32	25	1.71
45629364--45629452	44	2.0	46	86	4	128	28	5	28	38	1.79
45629642--45629671	15	1.9	16	93	6	53	50	6	0	43	1.28
45629609--45630038	119	3.6	118	95	1	743	51	3	1	43	1.31
45629796--45629958	38	4.2	38	63	18	91	51	4	1	42	1.31
45629973--45630008	18	2.0	18	100	0	72	61	0	0	38	0.96
45629950--45630311	91	4.0	91	94	1	593	46	4	3	46	1.37
45634025--45634085	21	2.9	21	82	0	68	22	34	27	14	1.94
45637599--45637630	17	1.9	16	93	6	55	75	3	0	21	0.95
45643915--45644019	21	5.0	21	68	4	68	17	20	19	42	1.89
45643883--45644039	42	3.7	42	82	0	179	17	20	18	43	1.88
45643962--45644034	21	3.5	21	75	5	67	16	27	17	38	1.91
45646234--45646272	20	1.9	21	89	5	62	69	0	10	20	1.17
45658199--45658251	27	2.0	27	96	0	97	15	3	11	69	1.31
45659735--45659950	51	4.3	51	92	0	344	28	24	15	31	1.96
45660324--45660363	21	2.0	20	90	5	62	10	20	30	40	1.85
45660473--45660566	43	2.2	43	86	3	127	27	34	18	20	1.95
45665498--45665534	19	1.9	19	88	0	56	13	2	2	81	0.92
45666753--45666785	14	2.3	15	94	5	59	36	33	0	30	1.58
45667077--45667242	88	1.9	89	96	1	307	48	6	3	41	1.47
45667436--45667478	19	2.2	20	87	4	61	13	2	4	79	1.00
45667850--45667891	7	6.0	7	88	0	66	28	52	0	19	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45667839--45667891	21	2.5	21	87	0	70	28	47	1	22	1.62
45667852--45667891	14	2.9	14	100	0	80	30	50	0	20	1.49
45668469--45668699	81	2.8	81	97	0	426	43	26	1	28	1.65
45668768--45668797	14	2.1	14	93	0	51	40	36	3	20	1.69
45668796--45668837	22	2.0	21	90	4	66	38	30	2	28	1.70
45669124--45669303	89	2.0	89	96	0	333	48	6	3	41	1.46
45669327--45669561	41	5.7	41	89	2	346	31	25	21	21	1.98
45669598--45669734	40	3.4	39	82	4	166	18	20	22	37	1.94
45670207--45670290	39	2.2	39	93	2	152	27	21	9	41	1.84
45680460--45680664	45	4.6	45	98	0	392	25	9	47	17	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185