genome.fa.s5.2.7.7.80.10.50.1000.179.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  179  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54395993--54396287	142	2.1	142	91	1	475	27	17	19	35	1.94
54396194--54396296	44	2.3	44	83	3	127	25	25	20	29	1.99
54407710--54407840	66	2.0	66	93	0	226	35	8	11	45	1.71
54410593--54410847	44	5.6	43	71	14	118	28	17	19	34	1.95
54410569--54410863	142	2.1	142	91	1	475	27	17	19	35	1.94
54410770--54410872	44	2.3	44	83	3	127	25	25	20	29	1.99
54422611--54423039	215	2.0	215	95	0	777	37	13	11	36	1.82
54423564--54423920	179	2.0	178	98	0	696	46	8	10	33	1.70
54429791--54429838	17	2.8	16	84	9	51	56	2	0	41	1.11
54436539--54437133	44	13.5	43	66	15	225	31	17	24	26	1.97
54436529--54437165	132	4.8	132	92	0	1006	31	18	24	26	1.97
54438949--54439042	12	8.0	12	69	16	54	40	2	3	54	1.28
54438951--54438981	16	1.9	16	93	0	53	38	3	0	58	1.15
54439186--54439216	8	3.9	8	95	0	53	25	0	6	67	1.14
54447656--54447727	35	2.1	35	97	0	135	27	26	11	34	1.90
54457480--54457504	13	1.9	13	100	0	50	32	8	24	36	1.84
54458572--54458624	26	2.0	26	88	0	79	18	18	33	28	1.95
54460005--54460081	23	3.3	23	85	0	100	6	19	25	48	1.73
54460050--54460128	24	3.3	24	73	1	70	13	16	25	44	1.85
54471117--54471148	16	2.0	16	100	0	64	56	0	6	37	1.25
54474441--54474743	40	7.6	40	95	0	534	23	28	20	27	1.99
54476652--54478066	709	2.0	708	86	3	2001	25	26	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54483578--54483755	27	6.6	27	84	3	205	29	28	15	26	1.96
54483599--54483754	82	1.9	81	88	3	233	29	28	15	26	1.96
54491939--54492121	40	4.6	40	95	0	312	22	28	22	26	1.99
54509539--54509580	20	2.2	19	86	4	57	52	9	2	35	1.47
54540384--54540415	14	2.3	14	100	0	64	71	6	15	6	1.26
54541252--54541343	35	2.5	37	82	8	107	36	14	18	30	1.90
54545033--54545095	28	2.3	27	81	10	74	57	1	1	39	1.18
54547757--54547815	11	5.3	11	76	10	57	18	30	3	47	1.65
54547757--54547812	22	2.5	22	88	2	76	19	28	3	48	1.66
54549710--54549749	7	5.9	7	85	14	57	47	0	0	52	1.00
54549781--54549887	21	5.0	22	82	10	132	43	28	0	27	1.55
54549780--54549887	43	2.5	44	85	10	143	43	28	0	27	1.55
54549864--54549912	24	2.0	25	84	8	64	48	34	0	16	1.46
54553026--54553464	125	3.5	125	90	3	681	28	21	18	31	1.97
54553599--54553639	21	1.9	22	85	5	57	51	34	0	14	1.43
54557045--54557084	14	2.9	13	88	7	53	22	12	0	65	1.26
54559202--54559245	15	2.9	16	86	13	74	18	4	6	70	1.27
54561338--54561388	25	2.0	25	100	0	102	27	7	3	60	1.42
54562944--54563009	34	1.9	34	96	0	123	27	24	19	28	1.99
54572045--54572077	16	2.0	17	88	5	50	78	3	3	15	0.99
54572627--54572654	14	2.0	14	100	0	56	35	0	7	57	1.26
54574625--54574671	23	2.0	23	84	8	60	72	4	6	17	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54574701--54574778	39	2.0	39	97	0	147	47	11	12	28	1.76
54575144--54575176	14	2.3	14	94	5	57	75	3	0	21	0.93
54575644--54575688	23	2.0	23	91	4	74	40	17	4	37	1.70
54575644--54575701	19	2.8	20	84	10	64	39	17	6	36	1.76
54576315--54576692	44	8.7	44	75	9	282	27	22	20	28	1.99
54576230--54576691	44	10.6	44	74	12	237	27	22	20	29	1.99
54576315--54576560	133	1.9	129	82	11	313	26	24	20	28	1.99
54576439--54576644	84	2.4	85	79	13	226	28	23	19	28	1.98
54576268--54576708	217	2.0	219	91	0	715	26	23	20	29	1.99
54576726--54576908	50	3.7	50	69	0	150	23	22	24	29	1.99
54576700--54576922	100	2.2	100	93	1	376	23	21	22	32	1.98
54576883--54576962	40	2.0	40	95	0	142	23	16	18	41	1.90
54576783--54577062	140	2.0	140	92	0	461	24	20	21	33	1.97
54576924--54577094	50	3.4	49	65	9	121	25	21	21	31	1.98
54576923--54577148	100	2.3	100	85	3	312	25	21	21	31	1.98
54576700--54577148	240	1.9	240	89	0	709	24	21	22	32	1.98
54577226--54577320	50	1.9	50	84	0	127	24	24	22	29	1.99
54577225--54577332	50	2.2	50	79	0	117	25	23	21	30	1.99
54577384--54577511	43	2.9	44	67	4	114	26	25	18	29	1.98
54577485--54577913	44	9.7	44	87	3	585	30	25	17	27	1.97
54579132--54579162	6	5.2	6	96	0	53	16	12	3	67	1.35
54584110--54584156	23	2.0	23	84	8	60	72	4	6	17	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54584963--54585020	22	2.6	22	81	7	64	44	17	1	36	1.59
54588146--54588226	15	5.4	15	68	11	67	46	7	20	24	1.76
54588142--54588251	30	3.7	30	93	0	184	47	6	22	23	1.74
54592843--54592918	15	5.1	15	67	10	57	46	6	22	25	1.76
54592839--54592918	30	2.7	30	94	0	133	47	6	22	23	1.74
54595406--54595437	15	2.1	15	94	0	55	15	6	9	68	1.36
54605956--54605999	22	2.0	21	83	12	54	40	0	0	59	0.98
54607489--54607521	17	2.0	16	94	5	57	60	0	0	39	0.97
54610374--54610554	62	2.9	61	80	10	206	40	3	3	51	1.38
54617245--54617283	3	13.0	3	84	10	53	33	2	33	30	1.72
54619739--54619775	8	4.5	8	86	6	56	13	2	0	83	0.74
54620927--54620985	29	2.0	29	86	0	82	35	6	11	45	1.67
54622282--54622386	52	2.0	52	100	0	210	32	23	1	41	1.65
54632018--54632048	15	2.1	15	100	0	62	38	6	32	22	1.80
54632205--54632243	18	2.3	17	86	8	53	38	5	12	43	1.65
54632985--54633014	15	2.0	15	93	0	51	23	6	46	23	1.75
54636201--54636231	15	2.1	15	100	0	62	38	6	32	22	1.80
54638061--54638135	15	5.0	15	75	20	52	45	1	2	50	1.24
54638714--54638769	22	2.6	21	75	8	58	41	1	3	53	1.29
54638719--54638773	23	2.4	24	75	9	60	38	1	5	54	1.34
54642291--54642449	43	4.0	42	75	16	165	23	15	25	35	1.94
54643768--54643815	24	2.0	24	83	0	60	4	20	27	47	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54647314--54647519	103	2.0	103	90	0	322	32	16	15	35	1.91
54653389--54653431	20	2.2	20	83	8	52	20	16	11	51	1.75
54659148--54659191	12	3.5	13	81	12	56	29	2	2	65	1.16
54661586--54661732	43	3.4	42	78	5	134	32	25	16	25	1.96
54663435--54663502	24	3.0	22	77	16	68	13	2	4	79	1.00
54663435--54663502	16	4.6	15	76	16	63	13	2	4	79	1.00
54665146--54665183	19	2.0	19	100	0	76	52	10	21	15	1.72
54666383--54666579	98	2.0	98	95	0	358	36	25	10	27	1.88
54667245--54667299	25	2.3	24	90	6	85	58	3	7	30	1.43
54667251--54667299	25	2.0	25	95	0	89	57	4	8	30	1.47
54668046--54668158	19	5.8	19	86	4	163	35	15	9	39	1.80
54668046--54668157	40	2.8	40	93	2	183	35	14	9	40	1.79
54668588--54668735	44	3.4	44	88	1	208	30	21	19	28	1.98
54668708--54668828	44	2.7	42	83	11	145	28	26	19	25	1.99
54668991--54669419	44	9.8	44	62	13	123	23	25	21	29	1.99
54668899--54669419	132	3.9	132	96	0	961	23	24	21	29	1.99
54674863--54674910	25	2.0	25	91	4	80	56	4	8	31	1.48
54675656--54675768	19	5.8	19	87	4	172	35	15	10	38	1.81
54675656--54675767	40	2.8	40	94	2	192	35	14	10	39	1.81
54675649--54675768	59	2.1	56	87	6	170	35	15	10	39	1.80
54682466--54682519	27	2.0	28	85	3	74	46	1	9	42	1.46
54687367--54687472	53	2.0	53	83	7	135	44	1	2	50	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54687668--54687708	16	2.6	16	92	0	73	26	31	4	36	1.78
54688241--54688285	9	5.1	9	91	2	74	31	11	13	44	1.78
54696570--54696635	11	6.4	11	72	24	63	37	4	0	57	1.19
54696552--54696644	39	2.4	39	85	8	143	33	3	0	63	1.10
54696618--54696657	21	1.9	21	89	0	62	37	2	0	60	1.11
54696617--54696675	22	2.8	21	80	14	59	40	1	3	54	1.27
54697175--54697343	65	2.9	54	79	17	180	31	1	22	44	1.63
54697228--54697472	130	1.9	130	89	0	382	29	1	23	44	1.63
54697223--54697472	65	3.8	65	84	5	344	30	1	23	44	1.63
54701296--54701518	114	2.0	113	85	7	301	22	19	23	34	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185