genome.fa.s5.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  180  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54701502--54701547	23	2.0	23	95	0	83	13	10	26	50	1.74
54701889--54702397	230	2.2	230	89	1	761	28	18	19	33	1.95
54702727--54702770	19	2.3	19	84	0	61	31	43	2	22	1.66
54704785--54704897	37	2.9	39	73	10	124	46	7	3	41	1.50
54704804--54704931	57	2.3	56	86	4	168	46	10	3	39	1.56
54704891--54705012	37	3.3	37	87	0	172	49	11	4	34	1.61
54704818--54705188	131	2.8	131	96	1	665	46	11	4	37	1.60
54705022--54705143	37	3.3	37	87	0	172	49	11	4	34	1.61
54705085--54705332	113	2.2	113	85	3	329	45	10	5	38	1.62
54705085--54705332	56	4.4	57	84	2	329	45	10	5	38	1.62
54705117--54705271	19	8.2	19	68	13	88	44	10	3	41	1.57
54705388--54705474	9	10.0	9	71	16	76	44	24	0	31	1.54
54705388--54705441	25	2.2	25	93	0	90	48	24	0	27	1.52
54705388--54705474	16	5.1	17	70	21	74	44	24	0	31	1.54
54707431--54707490	21	2.9	21	87	0	84	30	20	46	3	1.66
54707850--54708048	42	4.7	42	86	3	276	23	19	23	34	1.96
54708450--54708512	25	2.5	25	84	2	72	19	9	11	60	1.57
54708954--54708999	23	2.0	23	83	8	58	60	6	2	30	1.34
54715264--54715313	25	2.0	25	84	7	66	78	0	18	4	0.91
54715756--54715789	5	6.8	5	96	0	59	23	0	20	55	1.43
54718892--54718916	11	2.3	11	100	0	50	28	0	8	64	1.22
54721244--54721320	40	1.9	40	86	0	109	29	7	20	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54721534--54721683	45	3.4	45	81	1	176	23	18	18	40	1.91
54724291--54724773	241	2.0	241	98	0	930	27	14	21	36	1.92
54731102--54731133	3	11.0	3	93	6	57	34	0	0	65	0.93
54732284--54732317	3	11.3	3	100	0	68	32	32	0	35	1.58
54739053--54739109	24	2.3	24	82	8	71	61	3	0	35	1.13
54741630--54741678	16	3.1	17	88	8	68	51	0	0	48	1.00
54743313--54743356	18	2.7	15	80	16	52	47	0	13	38	1.43
54743626--54743658	14	2.3	15	89	5	50	51	9	0	39	1.34
54748627--54748702	31	2.5	31	80	0	98	48	18	2	30	1.62
54752322--54752457	46	3.0	46	91	0	218	30	27	8	33	1.86
54752381--54752455	23	3.2	24	63	21	59	29	30	6	33	1.83
54753669--54753716	17	2.9	17	87	3	71	50	20	2	27	1.60
54779521--54779552	7	4.6	7	100	0	64	28	12	0	59	1.34
54779876--54779903	5	5.6	5	100	0	56	0	64	35	0	0.94
54781906--54782126	114	1.9	113	81	6	259	42	18	6	33	1.75
54788147--54788209	30	2.1	30	96	0	117	50	20	4	23	1.67
54792414--54792473	31	1.9	31	89	0	93	31	8	10	50	1.66
54801681--54801712	12	2.7	12	95	0	55	50	15	3	31	1.60
54804689--54804748	31	1.9	31	83	6	77	31	15	11	41	1.82
54809649--54809810	60	2.7	61	79	4	168	42	17	15	24	1.88
54813616--54813641	5	5.2	5	100	0	52	19	0	0	80	0.71
54817514--54817582	13	4.8	14	71	16	52	62	1	4	31	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54820157--54820186	15	1.9	16	93	6	53	36	10	6	46	1.64
54833067--54833118	21	2.5	21	90	6	79	46	1	0	51	1.12
54833067--54833118	10	4.9	11	84	15	74	46	1	0	51	1.12
54833067--54833124	21	2.7	22	84	7	75	44	1	0	53	1.10
54833067--54833143	21	3.6	22	79	8	63	45	1	2	50	1.23
54834935--54834975	16	2.6	16	88	0	64	43	4	4	46	1.46
54834949--54835010	22	2.7	23	87	5	81	46	1	3	48	1.28
54847687--54847743	27	2.1	27	87	12	82	61	7	0	31	1.23
54851750--54851865	27	4.1	27	70	16	74	50	12	9	27	1.72
54851730--54851896	85	2.0	85	98	0	325	49	13	10	27	1.74
54851948--54852008	31	1.9	32	86	3	88	42	14	13	29	1.84
54863051--54863077	12	2.2	12	100	0	54	29	0	11	59	1.32
54868604--54868630	12	2.2	12	100	0	54	29	0	11	59	1.32
54872258--54872287	3	10.0	3	100	0	60	66	0	33	0	0.92
54872151--54872404	129	2.0	129	93	1	438	40	11	28	18	1.86
54872270--54872742	117	4.0	117	94	1	775	38	12	28	20	1.90
54898723--54898759	18	2.1	18	94	0	65	37	29	5	27	1.79
54898771--54898821	21	2.4	21	80	0	57	35	29	3	31	1.76
54898973--54899016	22	2.0	22	100	0	88	36	31	9	22	1.86
54901425--54901521	51	1.9	51	83	8	126	36	9	18	36	1.83
54902876--54902947	30	2.5	30	79	4	85	36	4	4	55	1.38
54913276--54913347	25	2.7	27	80	20	82	61	0	2	36	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54913752--54913792	19	2.1	19	86	4	55	41	2	0	56	1.13
54913799--54913832	16	2.2	15	89	5	50	55	0	0	44	0.99
54917419--54917579	83	1.9	83	94	0	286	38	14	18	29	1.90
54921859--54922021	23	7.1	23	80	2	184	31	26	20	21	1.98
54921859--54922021	46	3.5	46	87	0	236	31	26	20	21	1.98
54922249--54922287	18	2.2	17	86	13	53	46	20	0	33	1.51
54926356--54926414	30	1.9	31	82	3	75	47	5	20	27	1.71
54929531--54929578	24	2.0	24	84	12	62	52	0	0	47	1.00
54929667--54929697	14	2.2	14	100	0	62	45	6	29	19	1.75
54933544--54933592	25	2.0	25	83	0	62	71	6	2	20	1.18
54935996--54936048	25	2.1	25	86	6	72	60	3	0	35	1.15
54936959--54937006	21	2.2	22	82	10	55	29	6	4	60	1.40
54937587--54937612	10	2.6	10	100	0	52	73	0	0	26	0.84
54938745--54938785	20	2.0	20	86	9	57	39	17	7	36	1.77
54939623--54939699	32	2.4	32	85	6	95	35	11	15	37	1.84
54948027--54948060	17	2.0	17	88	0	50	47	0	5	47	1.26
54950357--54950401	21	2.3	19	84	7	54	40	15	2	42	1.59
54950382--54950421	14	2.9	14	84	0	53	40	20	7	32	1.80
54966904--54966936	15	2.1	16	88	5	50	36	0	3	60	1.12
54972163--54972231	33	2.1	33	89	5	104	43	36	5	14	1.70
54972575--54972955	191	2.0	191	98	0	735	24	19	22	32	1.97
54981515--54981571	20	3.1	19	79	16	59	70	0	1	28	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54983202--54983239	17	2.1	18	85	9	51	15	5	10	68	1.36
54992505--54992653	76	2.0	76	100	0	298	21	15	20	42	1.89
55004793--55004830	20	1.9	20	89	10	60	55	0	0	44	0.99
55016865--55016907	20	2.2	20	87	8	61	53	0	2	44	1.13
55017003--55017091	39	2.2	41	86	4	119	34	2	7	55	1.42
55018180--55018222	15	2.8	16	79	13	54	11	0	39	48	1.40
55018339--55018781	125	3.5	125	90	0	688	32	18	20	28	1.96
55021465--55021498	16	2.1	16	94	0	59	41	2	5	50	1.42
55022930--55023082	27	5.9	27	75	8	106	53	4	3	37	1.40
55022962--55023092	40	3.4	38	83	10	160	53	4	3	38	1.40
55022962--55023092	13	10.2	13	78	9	117	53	4	3	38	1.40
55023207--55023240	15	2.3	15	94	0	59	41	2	14	41	1.61
55023276--55023371	27	3.6	26	78	4	93	57	3	3	36	1.30
55023276--55023371	40	2.4	39	91	3	138	57	3	3	36	1.30
55023276--55023371	13	7.2	13	80	6	86	57	3	3	36	1.30
55022908--55023681	314	2.5	313	94	1	1365	51	5	5	36	1.48
55023521--55023554	15	2.3	15	94	0	59	41	2	14	41	1.61
55023590--55023681	13	7.0	13	86	7	123	57	6	2	33	1.36
55024497--55024522	5	5.2	5	100	0	52	38	19	19	23	1.93
55024842--55024878	9	4.1	9	85	0	56	27	10	16	45	1.80
55027169--55027266	51	1.9	51	87	4	144	47	2	24	25	1.62
55027230--55027294	11	6.1	10	83	16	62	46	4	27	21	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55027230--55027290	22	2.8	23	87	9	76	44	4	29	21	1.73
55033858--55033998	72	2.0	72	92	0	237	32	19	11	36	1.88
55045295--55045332	19	2.0	19	85	10	51	39	2	7	50	1.46
55046257--55046308	24	2.2	24	89	0	77	55	9	1	32	1.43
55048229--55048280	24	2.2	24	89	0	77	55	9	1	32	1.43
55058719--55058757	16	2.4	16	86	0	51	17	5	7	69	1.32
55060262--55060301	4	10.0	4	100	0	80	50	25	0	25	1.50
55060574--55060603	4	7.5	4	100	0	60	23	0	26	50	1.50
55063845--55063874	15	1.9	16	93	6	53	20	10	0	70	1.16
55068150--55068174	13	1.9	13	100	0	50	24	0	0	76	0.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185