genome.fa.s5.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  140  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42683400--42683443	23	1.9	23	85	0	61	70	9	2	18	1.24
42688452--42688583	66	2.0	66	94	1	230	48	15	6	28	1.71
42690439--42690474	8	4.8	8	86	13	58	52	0	0	47	1.00
42690527--42690574	18	2.7	19	75	12	57	47	4	6	41	1.48
42701266--42701369	29	3.5	29	65	14	77	38	18	12	30	1.88
42701255--42701387	60	2.2	58	78	12	153	31	16	11	40	1.84
42705999--42706033	18	1.9	18	88	0	52	48	11	0	40	1.39
42706138--42707005	433	2.0	433	100	0	1736	35	20	12	31	1.90
42708546--42708601	25	2.2	25	75	6	60	19	26	21	32	1.97
42708676--42708758	25	3.3	24	77	15	80	25	27	19	27	1.99
42708665--42708768	50	2.1	51	82	8	124	25	25	20	29	1.99
42710063--42710292	105	2.2	101	81	7	241	26	23	16	33	1.96
42715964--42716001	17	2.2	17	90	0	58	18	7	10	63	1.50
42722330--42722379	17	2.7	20	78	18	70	10	0	44	46	1.37
42730144--42730205	30	2.1	29	82	11	72	50	3	0	46	1.17
42730375--42730425	13	3.9	13	77	10	59	37	27	3	31	1.75
42732391--42732416	7	3.7	7	100	0	52	46	11	0	42	1.40
42736102--42736271	85	2.0	85	98	0	331	35	8	21	34	1.84
42736398--42736425	14	2.0	14	100	0	56	21	14	7	57	1.61
42738346--42738387	20	2.0	21	86	4	59	54	7	4	33	1.49
42745912--42745946	3	11.7	3	100	0	70	34	0	0	65	0.93
42746110--42746167	3	19.3	3	100	0	116	0	32	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42751224--42751357	25	5.4	25	73	10	105	39	19	23	17	1.92
42754529--42754684	30	5.2	29	77	7	136	33	22	5	38	1.76
42754547--42754718	30	5.9	28	75	13	116	33	22	6	37	1.80
42755228--42755286	11	5.3	11	85	4	82	76	0	22	1	0.88
42755228--42755297	11	6.3	11	75	14	63	77	0	21	1	0.85
42755228--42755297	23	3.2	22	82	6	88	77	0	21	1	0.85
42755401--42755454	11	4.7	11	84	8	56	81	9	9	0	0.88
42755419--42755457	14	2.9	14	88	11	64	76	10	12	0	1.01
42755399--42755455	12	4.7	12	81	10	62	82	8	8	0	0.85
42756140--42756502	17	20.2	17	68	19	170	32	13	11	42	1.79
42756140--42756538	35	11.1	35	73	13	262	33	13	10	42	1.79
42756354--42756541	53	3.6	53	72	18	151	34	12	10	43	1.76
42756140--42756537	18	22.3	16	68	22	149	32	13	10	42	1.79
42758336--42758434	47	2.1	48	94	1	173	43	9	31	16	1.79
42758552--42758636	43	2.0	43	97	0	161	18	11	30	38	1.87
42763966--42763994	10	3.0	10	95	5	51	31	27	0	41	1.56
42767480--42767527	11	4.5	11	87	12	73	85	14	0	0	0.60
42767491--42767534	8	5.1	8	82	15	52	86	11	2	0	0.66
42767482--42767527	19	2.4	19	96	3	83	84	15	0	0	0.62
42768411--42769468	76	13.7	76	86	5	1299	27	15	20	36	1.93
42768411--42769469	236	4.6	230	87	4	1356	27	15	20	36	1.93
42769665--42769801	30	4.6	31	83	7	142	32	24	4	38	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42769683--42769818	30	4.6	28	79	12	98	33	22	5	38	1.76
42770163--42770202	19	2.0	20	90	9	64	60	25	10	5	1.49
42770193--42770232	21	2.0	21	90	5	64	70	12	15	2	1.28
42770363--42770465	11	9.7	11	76	18	87	76	0	22	0	0.84
42770362--42770476	34	3.3	33	82	13	140	76	0	22	0	0.84
42770372--42770479	50	2.1	52	86	11	161	77	0	21	0	0.82
42770374--42770478	11	9.9	11	73	19	82	78	0	20	0	0.81
42770575--42770629	13	4.4	13	76	13	53	83	5	9	1	0.86
42771266--42771312	21	2.3	21	85	10	62	57	6	8	27	1.53
42771318--42771679	17	20.2	17	67	19	143	32	13	11	42	1.79
42771317--42771679	36	10.1	35	71	19	191	32	13	11	42	1.79
42772293--42772372	25	3.2	25	74	0	61	30	18	26	25	1.98
42772413--42772529	25	4.7	25	74	18	93	36	19	23	19	1.95
42772412--42772493	23	3.4	22	72	22	67	35	19	25	19	1.95
42772485--42772545	26	2.3	26	85	0	86	42	21	19	16	1.89
42775173--42775197	13	1.9	13	100	0	50	16	12	32	40	1.84
42783286--42783394	23	4.7	23	84	4	148	31	23	20	24	1.98
42783286--42783394	46	2.4	46	95	0	191	31	23	20	24	1.98
42787154--42787226	36	1.9	38	81	10	87	36	2	1	58	1.21
42787203--42787244	12	3.5	12	84	12	59	35	9	0	54	1.33
42787546--42787580	18	2.1	17	89	10	54	42	11	2	42	1.55
42789425--42789465	8	5.0	8	82	5	55	80	0	0	19	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42791012--42791052	8	5.0	8	82	5	55	80	0	0	19	0.71
42793551--42793597	19	2.5	19	86	6	60	27	19	8	44	1.79
42796423--42796464	7	6.0	7	81	18	52	69	0	16	14	1.20
42796423--42796464	21	2.0	21	86	9	59	69	0	16	14	1.20
42797740--42798639	44	20.4	44	81	7	876	30	14	23	31	1.94
42807446--42807769	106	3.1	104	84	8	410	26	0	14	58	1.40
42807589--42807754	53	3.1	53	65	16	135	24	0	16	59	1.37
42808015--42808067	21	2.5	22	78	3	54	32	5	7	54	1.52
42810231--42810334	48	2.2	47	87	3	145	48	8	11	31	1.70
42810989--42811040	26	2.0	26	96	0	95	46	9	19	25	1.80
42815384--42815513	42	3.1	42	78	4	136	45	18	18	17	1.86
42816877--42816912	11	3.4	11	92	3	56	69	2	0	27	1.02
42816947--42816985	17	2.2	18	86	4	53	61	15	0	23	1.33
42816934--42816982	19	2.5	20	78	18	59	63	18	0	18	1.32
42816875--42817079	113	1.8	114	88	3	315	60	12	0	25	1.39
42816875--42817132	113	2.3	108	82	8	299	60	12	1	25	1.38
42823720--42824052	27	12.4	27	78	3	307	20	19	19	40	1.91
42827549--42827605	19	3.3	19	68	27	63	50	14	10	24	1.73
42827546--42827610	32	2.0	32	100	0	130	46	15	12	26	1.81
42827915--42828053	72	1.9	72	94	0	242	33	25	10	30	1.89
42829180--42829272	38	2.5	38	79	10	93	75	4	15	5	1.14
42829198--42829272	39	1.9	39	83	2	98	76	2	17	4	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42836844--42836936	12	7.8	12	69	25	65	70	3	21	4	1.18
42845392--42845445	25	2.3	25	75	18	62	53	7	3	35	1.47
42850465--42850499	18	1.9	18	88	0	52	31	22	20	25	1.98
42850802--42850866	34	1.9	34	84	6	87	32	13	13	40	1.85
42851396--42851423	8	3.5	8	100	0	56	25	0	0	75	0.81
42857946--42857983	19	2.0	19	94	0	67	21	7	15	55	1.66
42860446--42860479	17	1.9	18	88	5	52	11	5	23	58	1.55
42869889--42869926	19	1.9	21	89	10	62	39	0	5	55	1.23
42869889--42869934	19	2.5	19	83	16	53	34	0	4	60	1.16
42870008--42870052	21	2.1	21	84	15	58	46	0	4	48	1.22
42870982--42871087	47	2.3	47	88	0	167	27	23	11	37	1.89
42885506--42885619	43	2.7	43	94	0	192	28	15	23	32	1.95
42887442--42887510	31	2.3	31	87	12	108	39	8	13	39	1.75
42887445--42887517	29	2.5	28	84	8	76	39	9	10	39	1.73
42890466--42890492	12	2.2	12	100	0	54	62	0	7	29	1.22
42890513--42890584	29	2.4	29	86	6	92	27	5	0	66	1.13
42890552--42890645	19	4.8	19	72	12	73	37	4	0	58	1.18
42890560--42890606	22	2.2	20	82	14	51	38	2	0	59	1.09
42890591--42890646	18	2.9	20	82	12	64	35	3	0	60	1.14
42891649--42891706	28	2.1	28	96	0	107	48	15	10	25	1.77
42893560--42893590	11	2.8	11	90	0	53	16	12	0	70	1.16
42894667--42894724	30	1.9	30	96	0	107	29	34	0	36	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42894696--42894746	22	2.3	22	93	6	86	29	35	0	35	1.58
42894781--42894846	32	2.1	31	97	2	123	33	0	0	66	0.92
42895950--42896024	25	3.2	25	78	18	106	45	16	8	30	1.75
42895967--42896035	18	3.3	18	70	30	57	44	14	5	34	1.69
42895971--42896039	20	3.2	20	77	18	84	43	14	5	36	1.70
42895950--42896039	45	2.0	45	100	0	180	44	15	6	33	1.73
42896389--42896492	41	2.5	41	90	0	154	28	24	21	25	1.99
42897742--42897766	13	1.9	13	100	0	50	68	24	0	8	1.16
42898282--42898314	7	4.7	7	100	0	66	27	0	12	60	1.32
42899525--42899822	30	9.7	30	82	11	370	45	25	0	28	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185