genome.fa.s5.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  85  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26811876--26811928	15	3.7	15	76	16	58	50	0	3	45	1.19
26816117--26816170	28	1.9	28	100	0	108	50	7	11	31	1.66
26820728--26820794	34	2.0	34	82	5	82	20	26	22	29	1.99
26826607--26826678	25	2.9	25	76	0	81	27	27	19	25	1.99
26830197--26830259	5	12.6	5	82	0	81	25	34	0	39	1.56
26830197--26830259	15	4.2	15	89	0	99	25	34	0	39	1.56
26831157--26831607	51	8.9	51	74	6	312	29	24	14	31	1.94
26831264--26831607	102	3.4	102	94	0	571	29	25	14	30	1.95
26831828--26831859	16	2.0	16	93	0	55	43	9	6	40	1.62
26832949--26833055	54	2.0	54	100	0	214	30	16	11	41	1.84
26833947--26833982	18	1.9	19	88	5	56	33	22	0	44	1.53
26835575--26835627	5	10.6	5	83	0	70	24	33	0	41	1.55
26836540--26836666	50	2.5	50	92	0	200	31	25	14	29	1.94
26836642--26836958	104	3.0	104	99	0	625	27	30	12	29	1.93
26836636--26836912	51	5.4	51	67	22	200	28	29	12	28	1.93
26839259--26839315	27	2.1	27	83	3	71	31	0	3	64	1.10
26841973--26842011	18	2.2	17	86	13	53	33	0	20	46	1.51
26842229--26842350	23	5.3	23	89	6	185	22	21	26	29	1.99
26846108--26846146	3	13.0	3	100	0	78	66	0	0	33	0.92
26846543--26846580	17	2.2	17	86	9	51	42	0	2	55	1.14
26846919--26846948	7	4.3	7	91	0	51	73	0	0	26	0.84
26848055--26848079	8	3.1	8	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26861154--26861189	19	1.9	18	88	5	54	13	16	0	69	1.19
26861155--26861197	18	2.3	19	84	4	52	18	18	0	62	1.32
26862053--26862103	25	2.0	25	96	0	93	33	15	25	25	1.95
26869464--26869518	17	3.2	17	100	0	110	14	36	27	21	1.93
26873765--26873823	25	2.4	25	82	0	64	22	27	27	23	1.99
26877836--26877912	25	3.1	25	75	14	86	36	18	23	22	1.95
26881124--26881428	43	7.1	43	84	4	384	32	26	16	23	1.96
26883841--26883897	28	2.0	28	86	6	80	47	42	1	8	1.45
26887255--26887546	41	7.1	41	73	7	225	32	26	20	21	1.98
26887373--26887546	83	2.1	82	82	5	208	32	29	19	18	1.96
26887614--26887720	40	2.7	41	79	4	121	19	22	20	37	1.94
26893219--26893292	34	2.1	34	83	14	89	37	20	10	31	1.87
26893460--26893612	41	3.7	41	87	2	234	24	28	19	28	1.99
26896686--26896849	45	3.6	44	81	4	150	35	26	15	21	1.94
26896686--26896849	90	1.8	90	81	7	208	35	26	15	21	1.94
26907484--26907520	15	2.5	15	100	0	74	35	37	21	5	1.77
26914998--26915067	25	2.8	25	84	0	86	22	20	25	31	1.98
26918383--26918438	18	3.4	18	68	31	54	41	0	17	41	1.50
26918384--26918435	16	3.4	16	71	17	56	40	0	17	42	1.49
26918762--26918816	20	2.8	20	88	0	83	47	5	21	25	1.72
26920322--26920354	17	1.9	17	93	0	57	57	15	12	15	1.65
26922230--26922338	50	2.2	50	81	3	130	18	31	24	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26927155--26927205	26	2.0	26	92	0	84	19	21	21	37	1.95
26927290--26927341	24	2.2	24	82	6	61	21	23	19	36	1.95
26927298--26927345	24	2.0	25	91	4	80	18	20	18	41	1.90
26930702--26930731	14	2.1	14	93	0	51	76	3	20	0	0.92
26931043--26931209	78	2.1	78	89	0	262	40	5	17	35	1.73
26944447--26944479	6	5.5	6	96	0	57	0	30	0	69	0.88
26959977--26960205	40	5.7	40	82	0	260	36	15	25	22	1.94
26959970--26960209	80	3.0	80	83	0	327	36	16	25	21	1.94
26959968--26960207	120	2.0	120	84	0	309	37	16	25	21	1.93
26959970--26960226	40	6.4	40	81	0	192	36	15	25	22	1.94
26962035--26962116	43	1.9	42	89	0	119	24	17	10	46	1.80
26967388--26967431	20	2.2	20	91	0	70	31	22	11	34	1.90
26968669--26968711	18	2.4	18	84	7	52	32	37	16	13	1.88
26969854--26969882	13	2.1	14	93	6	51	72	0	20	6	1.07
26969871--26969952	35	2.3	35	91	4	130	58	4	25	10	1.52
26973589--26973631	19	2.2	19	83	8	50	60	11	13	13	1.59
26975909--26975954	23	2.0	23	91	0	74	17	13	26	43	1.85
26979172--26979255	26	3.2	26	86	9	125	42	13	8	35	1.74
26979240--26979338	27	3.7	27	83	2	101	42	23	9	25	1.83
26979830--26979885	27	2.1	27	93	0	94	17	23	25	33	1.96
26980435--26980473	18	2.1	18	85	4	51	30	7	12	48	1.69
26982523--26982683	27	6.0	27	78	8	157	42	21	5	29	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26982538--26982704	81	2.1	81	79	6	178	42	20	7	29	1.80
26982527--26982688	54	3.0	54	81	1	200	41	21	6	29	1.79
26993328--26993410	20	4.2	20	75	6	87	13	32	18	36	1.89
27007346--27007478	51	2.6	51	83	4	162	23	17	26	33	1.96
27007448--27007495	12	3.7	12	77	20	51	22	10	29	37	1.88
27007445--27007487	14	3.1	14	75	24	54	23	13	27	34	1.93
27014918--27015139	51	4.4	51	75	7	166	28	17	26	28	1.97
27017338--27017363	12	2.2	12	100	0	52	73	11	0	15	1.11
27019438--27019473	18	2.0	18	100	0	72	16	22	16	44	1.86
27023790--27025883	851	2.5	851	97	0	3969	35	11	16	36	1.84
27026254--27026307	26	2.1	26	100	0	108	35	0	14	50	1.44
27035631--27035658	14	2.0	14	100	0	56	35	21	7	35	1.81
27036893--27036933	20	2.0	20	85	0	55	41	21	24	12	1.87
27037082--27037158	5	15.0	5	94	2	127	38	20	0	40	1.53
27041452--27041636	79	2.3	81	84	7	236	25	22	27	24	2.00
27041453--27041636	40	4.6	39	81	9	212	25	22	27	23	2.00
27041453--27041669	79	2.7	79	81	7	201	26	22	27	23	2.00
27043997--27044115	32	3.7	32	78	2	132	35	21	22	21	1.96
27045499--27045676	27	6.6	27	77	6	137	30	28	15	25	1.96
27045499--27045676	54	3.3	54	78	7	164	30	28	15	25	1.96
27053505--27053682	27	6.6	27	77	6	137	30	28	15	25	1.96
27053505--27053682	54	3.3	54	78	7	164	30	28	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27061576--27061753	27	6.6	27	77	6	137	30	28	15	25	1.96
27061576--27061753	54	3.3	54	78	7	164	30	28	15	25	1.96
27069582--27069759	27	6.6	27	77	6	137	30	28	15	25	1.96
27069582--27069759	54	3.3	54	78	7	164	30	28	15	25	1.96
27072612--27072636	8	3.1	8	100	0	50	76	0	0	24	0.80
27075639--27075732	42	2.2	42	84	3	127	31	23	14	29	1.95
27090611--27090681	24	3.0	24	91	0	115	36	1	36	25	1.65
27092092--27092163	29	2.5	29	84	2	83	19	22	23	34	1.96
27092112--27092172	29	2.1	29	84	6	79	19	18	21	40	1.91
27097920--27097966	24	2.0	24	91	0	76	36	2	38	23	1.67
27098911--27098950	8	5.0	8	82	11	55	47	25	22	5	1.71
27099179--27099293	57	2.1	54	83	8	142	18	23	21	36	1.95
27099179--27099293	28	4.1	27	84	8	133	18	23	21	36	1.95
27108023--27108096	32	2.3	32	80	0	85	29	20	18	31	1.97
27108332--27108391	27	2.2	27	79	5	68	21	20	26	31	1.98
27118250--27118278	10	2.7	11	89	10	51	34	0	17	48	1.47
27120123--27120451	166	2.0	165	89	1	507	27	12	11	49	1.74
27136933--27137051	43	2.8	43	74	1	114	32	27	17	21	1.96
27137862--27137921	22	2.7	23	73	19	63	66	6	0	26	1.16
27137871--27137904	4	8.0	4	90	9	50	73	2	0	23	0.97
27139258--27139310	23	2.4	22	76	20	56	9	18	1	69	1.25
27141658--27141717	22	2.7	23	73	19	63	66	6	0	26	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27141667--27141700	4	8.0	4	90	9	50	73	2	0	23	0.97
27143054--27143106	23	2.4	22	76	20	56	9	18	1	69	1.25
27145470--27145497	4	7.0	4	100	0	56	75	0	0	25	0.81
27147058--27147096	20	2.0	20	89	0	60	35	12	2	48	1.55
27147825--27147860	17	2.1	17	100	0	72	61	0	19	19	1.35
27150266--27150373	26	4.2	26	93	0	189	32	7	24	36	1.83
27161763--27161789	7	3.9	7	100	0	54	0	0	25	74	0.83
27162029--27163077	176	6.0	176	89	2	1527	26	23	18	31	1.97
27162363--27162985	43	14.2	45	65	19	133	25	24	18	31	1.98
27162029--27163077	351	3.0	351	89	2	1552	26	23	18	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185