genome.fa.s5.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  146  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44339357--44339423	34	1.9	35	90	3	109	46	13	8	31	1.74
44339498--44339549	22	2.2	24	83	6	63	51	5	1	40	1.37
44342832--44342860	14	2.1	14	100	0	58	41	27	17	13	1.87
44346082--44346315	116	2.0	117	93	0	398	38	15	10	35	1.83
44347641--44347674	16	2.1	16	88	0	50	50	14	17	17	1.79
44353439--44353476	17	2.2	17	81	9	51	50	0	0	50	1.00
44353877--44353946	9	7.8	9	93	0	104	38	27	10	24	1.87
44357549--44357626	27	2.9	27	92	0	120	26	26	30	15	1.96
44357911--44357936	3	8.7	3	100	0	52	34	0	0	65	0.93
44358073--44358101	14	2.1	14	100	0	58	37	6	0	55	1.27
44358600--44358640	9	4.7	9	84	6	57	2	4	7	85	0.81
44358599--44358631	17	1.9	17	100	0	66	3	6	6	84	0.84
44358597--44358642	9	5.0	9	81	5	56	2	4	8	84	0.83
44358641--44358699	27	2.2	26	85	8	82	54	0	5	40	1.23
44359102--44359153	20	2.5	21	79	14	63	40	0	5	53	1.25
44359858--44359919	27	2.2	28	85	5	90	24	24	6	45	1.76
44370998--44371065	22	3.1	22	72	8	66	60	14	10	14	1.59
44372252--44372366	61	1.9	61	85	0	158	37	6	15	40	1.75
44373499--44373801	154	2.0	154	95	1	545	29	26	14	29	1.95
44380049--44380302	21	11.3	22	65	22	93	31	2	11	54	1.49
44380049--44380118	20	3.4	20	84	5	86	30	2	8	58	1.42
44380004--44380219	103	2.0	107	82	8	264	31	2	11	54	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44380151--44380246	27	3.8	25	77	16	101	32	2	12	53	1.50
44380288--44380404	58	2.1	56	83	6	146	31	0	18	48	1.54
44380440--44380520	37	2.2	37	95	2	144	55	2	2	39	1.26
44383678--44383719	21	2.0	22	90	4	68	0	28	2	69	1.01
44383680--44383729	18	2.6	18	84	9	55	2	28	2	68	1.12
44383806--44383869	27	2.4	27	78	0	74	26	32	25	15	1.95
44385542--44385587	17	2.8	17	75	18	53	47	0	0	52	1.00
44389759--44389809	21	2.4	21	87	6	68	60	1	1	35	1.19
44392562--44392656	39	2.4	39	96	0	172	4	20	38	36	1.72
44392616--44392707	24	3.7	24	78	8	94	6	18	42	32	1.76
44394114--44394199	19	4.5	19	68	18	54	46	1	0	52	1.08
44401172--44401360	39	4.8	38	70	15	118	33	4	12	49	1.60
44404175--44404230	8	7.1	8	79	4	69	26	1	23	48	1.61
44406380--44406679	157	1.9	156	87	6	441	32	10	8	48	1.68
44406630--44406847	120	1.8	119	88	3	330	33	8	5	51	1.57
44406730--44407228	152	3.3	151	79	9	600	30	10	6	52	1.61
44406448--44406998	272	2.0	273	89	3	851	32	10	6	50	1.63
44407557--44407606	19	2.6	19	75	15	57	0	38	0	62	0.96
44407583--44407629	14	3.3	14	81	3	58	0	34	0	65	0.93
44407735--44407809	5	15.4	5	71	18	52	62	0	36	1	1.04
44407731--44407792	10	5.6	11	75	21	58	59	0	38	1	1.07
44407750--44407820	20	3.5	20	84	5	90	66	0	32	1	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44407735--44407809	24	3.3	24	75	17	79	62	0	36	1	1.04
44408144--44408997	154	5.6	151	80	11	944	52	7	10	29	1.62
44408606--44409002	138	2.8	140	80	14	400	51	6	12	29	1.64
44408152--44409002	305	2.9	294	87	6	1230	52	7	10	29	1.63
44412362--44412519	84	1.9	84	84	7	214	21	18	29	31	1.97
44412350--44412519	43	4.0	43	79	13	199	21	17	28	31	1.96
44412680--44412711	16	1.9	17	93	6	57	40	0	21	37	1.54
44414328--44414529	39	5.3	38	69	16	139	50	11	4	34	1.59
44414328--44414414	37	2.3	38	86	7	115	52	10	3	33	1.52
44414401--44414447	23	2.0	23	84	8	60	59	14	2	23	1.46
44414439--44414507	37	1.9	36	82	11	88	42	11	5	40	1.65
44415112--44415163	21	2.4	22	84	12	63	71	15	5	7	1.29
44415116--44415163	24	2.0	24	88	4	71	70	16	6	6	1.28
44417557--44417610	16	3.4	16	75	7	56	51	0	0	48	1.00
44417558--44417618	30	1.9	32	87	9	90	50	0	0	49	1.00
44417546--44417618	30	2.4	31	80	14	89	47	1	0	50	1.09
44417578--44417621	22	2.0	22	86	4	61	50	0	0	50	1.00
44418247--44418289	18	2.2	20	88	8	63	39	0	0	60	0.97
44418342--44418389	14	3.9	13	74	23	50	47	0	0	52	1.00
44418335--44418392	23	2.5	23	86	8	73	44	0	0	55	0.99
44418367--44418400	15	2.3	15	90	5	52	38	0	0	61	0.96
44418422--44418472	22	2.3	23	89	3	77	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44418494--44418535	21	2.0	22	90	4	68	50	0	0	50	1.00
44418494--44418542	21	2.3	21	85	3	62	48	2	2	46	1.25
44418562--44418611	22	2.3	22	86	6	66	58	2	0	40	1.10
44418607--44418651	24	1.9	23	86	4	63	80	4	6	8	1.03
44432994--44433026	11	2.8	12	81	9	50	69	0	0	30	0.88
44434249--44434342	44	2.1	44	90	0	143	30	10	19	39	1.85
44436217--44436273	14	4.2	13	75	20	55	40	26	7	26	1.81
44442395--44442451	28	2.2	26	81	15	64	28	8	3	59	1.44
44444595--44444626	6	5.3	6	100	0	64	15	50	0	34	1.45
44447185--44447228	21	2.1	21	100	0	88	25	27	13	34	1.93
44457236--44457261	9	2.9	9	100	0	52	69	0	19	11	1.18
44475774--44475835	11	5.6	11	78	3	63	24	32	1	41	1.64
44475772--44475847	22	3.4	22	79	16	86	25	30	1	43	1.63
44475812--44475908	51	1.9	51	82	4	124	25	25	4	44	1.72
44477139--44477174	16	2.2	17	90	5	56	33	0	0	66	0.92
44478121--44478145	12	2.1	12	100	0	50	48	16	24	12	1.79
44484954--44484986	6	5.7	6	92	3	50	18	3	0	78	0.87
44494573--44494607	19	1.9	18	88	11	54	51	2	0	45	1.16
44494577--44494615	18	2.2	18	86	9	53	51	2	0	46	1.14
44500791--44500828	19	2.1	19	85	5	51	57	15	2	23	1.51
44502443--44502478	18	2.0	18	94	0	63	22	19	11	47	1.80
44511561--44511587	13	2.1	13	100	0	54	22	0	7	70	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44511902--44511945	23	1.9	23	86	9	63	36	2	0	61	1.09
44520225--44520272	21	2.2	22	85	3	62	58	6	6	29	1.47
44520328--44520542	112	1.9	112	93	1	369	50	8	6	33	1.60
44523690--44524059	184	2.1	174	82	6	436	34	18	22	24	1.96
44524764--44524818	22	2.5	22	96	0	101	50	9	30	9	1.65
44526343--44526377	18	1.9	18	88	0	52	48	17	8	25	1.75
44526737--44526767	16	1.9	16	100	0	62	22	32	0	45	1.53
44526754--44526799	20	2.2	21	85	11	60	17	34	0	47	1.48
44541173--44541233	31	2.0	31	87	6	88	47	8	8	36	1.63
44542008--44542049	22	1.9	22	90	0	66	38	0	26	35	1.57
44548444--44548510	32	2.1	32	94	0	116	17	28	40	13	1.88
44561062--44561107	16	2.9	16	83	0	56	17	2	8	71	1.21
44561060--44561108	20	2.5	20	80	6	64	16	4	10	69	1.32
44561660--44561881	107	2.1	106	88	3	322	31	18	16	33	1.93
44565302--44565356	20	2.7	20	71	20	51	47	0	5	47	1.25
44566161--44566443	153	1.9	149	81	5	345	43	12	12	31	1.79
44566622--44566647	6	4.3	6	100	0	52	15	50	34	0	1.45
44572479--44572542	26	2.4	27	82	10	69	56	3	3	37	1.31
44572501--44572547	25	1.9	24	86	4	67	51	2	2	44	1.25
44594655--44594723	34	2.0	34	100	0	138	33	20	8	37	1.83
44597138--44597244	29	3.8	28	75	20	107	75	0	1	22	0.90
44597095--44597225	57	2.4	55	80	15	148	73	0	3	23	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44597074--44597245	6	26.8	6	72	18	66	74	0	3	21	1.01
44597126--44597245	26	4.6	25	75	18	102	73	0	2	24	0.96
44597180--44597245	19	3.7	19	82	7	77	77	0	0	22	0.77
44597109--44597245	7	19.7	7	73	18	58	72	0	2	24	0.99
44597127--44597243	5	24.2	5	73	17	72	74	0	2	23	0.94
44600939--44600999	5	12.2	5	92	0	104	59	1	0	39	1.08
44610279--44610336	29	2.0	29	100	0	116	55	10	0	34	1.34
44616371--44616405	18	1.9	18	88	0	52	68	0	2	28	1.04
44618394--44618476	39	2.1	38	93	4	139	66	0	2	31	1.05
44618413--44618485	17	4.0	17	70	16	65	64	0	1	34	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185