genome.fa.s5.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  145  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44040535--44040576	15	2.9	15	82	10	52	47	0	0	52	1.00
44040797--44040829	16	2.1	16	100	0	66	18	33	6	42	1.75
44040875--44040919	16	2.8	16	96	0	81	46	4	28	20	1.69
44041139--44041381	120	2.0	120	96	1	452	48	6	1	43	1.37
44041254--44041300	16	3.0	16	78	12	53	51	2	0	46	1.13
44041187--44041374	61	3.1	61	69	17	192	48	7	2	42	1.43
44042229--44042254	11	2.4	11	100	0	52	42	34	15	7	1.75
44043037--44043103	33	2.0	33	100	0	134	50	25	2	20	1.62
44044255--44044282	14	2.0	14	100	0	56	64	0	28	7	1.20
44044258--44044301	18	2.5	17	79	17	54	70	0	22	6	1.11
44056926--44056950	11	2.3	11	100	0	50	8	0	0	92	0.40
44061475--44061591	41	2.9	41	90	0	189	23	17	33	25	1.96
44061425--44061705	155	1.8	154	88	2	429	25	19	28	25	1.99
44061520--44061999	114	4.2	114	89	0	719	25	19	27	26	1.99
44061903--44062056	73	2.1	72	90	1	236	27	18	27	25	1.98
44062209--44062257	14	3.4	14	91	2	71	24	2	38	34	1.67
44062223--44062291	14	4.8	15	80	7	54	23	0	40	36	1.55
44062493--44062531	14	2.7	15	88	4	53	30	0	33	35	1.58
44062550--44062606	15	3.9	14	84	15	80	24	0	42	33	1.55
44063645--44063863	72	3.1	72	59	23	154	38	16	16	28	1.90
44063502--44064474	148	6.6	145	94	3	1500	37	16	16	29	1.90
44064468--44064499	15	2.1	15	100	0	64	43	9	15	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44065904--44065933	15	2.0	15	93	0	51	46	0	10	43	1.37
44068154--44068186	12	2.8	12	86	4	50	27	0	9	63	1.24
44070930--44070987	29	2.0	29	83	10	73	41	5	1	51	1.34
44074783--44074807	6	4.2	6	100	0	50	20	0	0	80	0.72
44077778--44077810	16	2.1	16	94	0	57	24	9	12	54	1.66
44087592--44087621	7	4.4	7	95	4	53	76	0	23	0	0.78
44097928--44097982	25	2.2	25	83	6	67	23	9	5	61	1.46
44099340--44099378	17	2.4	16	95	4	69	41	2	0	56	1.13
44102920--44102954	17	2.1	17	100	0	70	28	54	5	11	1.59
44103603--44103657	25	2.2	25	83	6	67	23	9	5	61	1.46
44105015--44105053	17	2.4	16	95	4	69	41	2	0	56	1.13
44110604--44110928	109	3.0	109	80	6	372	30	16	18	35	1.92
44126121--44126160	22	1.9	20	90	10	62	32	5	2	60	1.32
44137001--44137076	38	2.0	38	100	0	152	28	10	18	42	1.83
44141885--44141927	15	2.9	14	80	10	50	60	0	6	32	1.23
44146213--44146255	18	2.5	17	82	14	52	37	2	0	60	1.10
44166498--44166910	140	2.9	138	83	5	465	32	19	19	28	1.96
44167217--44167248	8	4.0	8	100	0	64	50	0	0	50	1.00
44167213--44167291	16	4.8	16	71	18	65	45	0	2	51	1.14
44167232--44167300	32	2.2	32	82	7	88	46	0	4	49	1.21
44167502--44167587	41	2.1	42	95	2	156	67	0	3	29	1.07
44167545--44167570	11	2.4	11	100	0	52	53	0	7	38	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44168470--44168551	11	7.9	11	69	17	50	35	0	13	51	1.41
44168469--44168516	15	3.1	14	76	21	51	35	0	12	52	1.40
44168503--44168566	29	2.2	28	86	10	85	40	0	15	43	1.47
44168601--44168723	37	3.1	40	74	10	119	26	14	21	37	1.92
44171490--44171683	96	2.0	96	88	2	291	33	17	13	36	1.88
44176346--44176537	42	4.5	42	87	3	233	42	17	23	16	1.89
44176340--44176537	85	2.3	85	86	0	272	42	17	23	16	1.88
44176332--44176539	21	9.9	21	66	3	103	42	17	23	16	1.88
44176763--44176849	46	1.9	46	88	2	131	45	8	1	44	1.40
44208061--44208148	44	2.0	42	87	8	124	50	4	7	37	1.52
44221433--44221471	18	2.2	18	85	0	51	46	0	0	53	1.00
44226840--44226889	21	2.3	21	82	3	64	20	10	6	64	1.45
44228206--44228231	11	2.4	11	100	0	52	92	7	0	0	0.39
44235109--44235310	98	2.1	98	100	0	404	33	22	12	30	1.92
44239826--44239871	24	2.0	23	83	12	58	26	6	10	56	1.58
44243607--44243689	21	3.9	21	78	7	78	33	21	24	20	1.97
44243616--44243676	21	2.8	22	82	9	81	31	24	26	18	1.97
44244852--44244880	3	9.7	3	100	0	58	65	0	0	34	0.93
44245011--44245056	14	3.3	14	93	0	74	54	2	0	43	1.12
44248420--44248482	28	2.2	29	81	13	69	33	3	19	44	1.66
44248875--44248954	3	26.7	3	77	5	81	30	3	5	61	1.35
44249418--44249736	108	3.0	108	94	0	550	29	15	19	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44250011--44250036	6	4.3	6	100	0	52	0	19	15	65	1.27
44256298--44256355	21	2.8	19	74	10	53	36	1	1	60	1.17
44256764--44256817	27	2.0	27	96	3	101	18	25	11	44	1.83
44265720--44265750	9	3.4	9	90	0	53	25	12	22	38	1.90
44265805--44265841	9	4.1	9	89	0	56	48	13	8	29	1.71
44266055--44266114	30	2.0	31	86	3	86	20	40	0	40	1.52
44276553--44276619	34	1.9	35	90	3	109	34	10	11	43	1.76
44277921--44277990	35	2.0	35	91	5	115	50	18	2	28	1.61
44277963--44278032	27	2.6	27	80	8	79	51	20	2	25	1.61
44284801--44285013	46	4.7	46	91	2	335	31	15	23	29	1.95
44295902--44295978	31	2.6	28	83	8	91	57	0	1	41	1.07
44295942--44296007	10	6.6	10	71	13	55	59	0	0	40	0.98
44295895--44295973	39	2.0	39	80	9	90	53	0	1	45	1.08
44295943--44295999	21	2.8	21	83	2	62	57	0	0	42	0.98
44297029--44297062	16	2.1	16	88	0	50	70	0	0	29	0.87
44297017--44297081	31	2.1	32	86	13	91	63	3	0	33	1.10
44297127--44297152	6	4.3	6	100	0	52	0	50	15	34	1.45
44298391--44298434	21	2.1	21	84	16	56	50	6	38	4	1.50
44304448--44304531	31	2.7	32	83	10	113	44	7	0	48	1.30
44304448--44304538	29	3.0	29	77	6	92	43	7	1	47	1.39
44307863--44307936	38	1.9	38	97	0	139	21	20	13	44	1.85
44308079--44308127	16	3.1	16	78	0	53	26	2	20	51	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44308407--44308502	48	2.0	48	89	0	147	13	22	14	48	1.79
44309190--44309285	48	2.0	48	89	0	147	13	22	14	48	1.79
44308362--44309926	776	2.0	777	97	0	2943	31	17	16	33	1.93
44309922--44309991	30	2.3	30	82	0	77	42	25	21	10	1.84
44318977--44319330	125	2.8	126	89	1	577	29	15	22	32	1.95
44322445--44322469	10	2.5	10	100	0	50	48	0	8	44	1.32
44322452--44323340	110	8.0	110	97	1	1661	47	5	11	35	1.64
44322452--44323340	221	4.0	221	97	0	1656	47	5	11	35	1.64
44322452--44323340	441	2.0	444	97	1	1687	47	5	11	35	1.64
44323586--44323613	6	4.7	6	100	0	56	14	0	50	35	1.43
44323406--44323636	29	7.1	34	77	21	239	21	0	34	44	1.53
44323524--44323651	64	1.9	67	87	10	192	24	0	32	42	1.60
44323339--44323601	29	8.9	29	85	5	348	23	0	32	44	1.54
44323700--44323748	25	1.9	25	87	4	71	38	16	4	40	1.67
44324147--44324181	18	1.9	18	88	0	52	31	8	34	25	1.86
44325328--44325644	29	11.1	29	80	15	340	23	0	31	45	1.53
44325398--44325435	6	6.5	6	96	3	69	15	0	47	36	1.46
44325328--44325650	93	3.7	93	85	11	431	22	0	31	45	1.53
44325629--44325656	6	4.7	6	100	0	56	14	0	50	35	1.43
44325504--44325694	64	2.9	67	82	10	193	24	0	31	43	1.58
44325449--44325694	93	2.6	95	85	11	344	23	0	31	44	1.57
44325415--44325644	29	7.7	29	91	6	343	23	0	31	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44325743--44325791	25	1.9	25	87	4	71	38	16	4	40	1.67
44326186--44326231	18	2.6	18	82	0	56	39	8	30	21	1.84
44326869--44326893	7	3.6	7	100	0	50	60	12	0	28	1.32
44327520--44327551	16	1.9	16	93	6	55	68	6	0	25	1.12
44327648--44327708	31	2.0	31	96	0	113	62	0	0	37	0.96
44327650--44327691	21	2.0	21	85	0	57	64	0	0	35	0.94
44328022--44328083	29	2.2	28	82	2	70	48	14	9	27	1.75
44332058--44332158	52	1.9	52	89	0	157	30	11	22	34	1.90
44339353--44339429	14	5.0	15	71	20	52	42	14	9	33	1.77
44339369--44339408	20	2.0	20	90	0	62	50	12	10	27	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185