genome.fa.s5.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  105  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33079880--33079913	17	2.0	17	88	0	50	35	8	26	29	1.87
33083941--33084140	97	2.1	96	91	2	321	37	18	2	42	1.63
33092098--33092142	23	2.0	23	91	4	74	46	17	4	31	1.68
33092095--33092152	22	2.6	22	86	7	82	43	18	3	34	1.68
33100076--33100117	11	3.5	12	77	9	50	71	0	4	23	1.05
33100985--33101038	24	2.2	24	87	12	76	53	1	5	38	1.35
33101842--33101915	19	3.8	19	87	7	112	37	9	16	36	1.81
33101842--33101904	21	3.1	21	93	4	103	36	9	15	38	1.81
33103822--33103873	21	2.6	19	82	11	68	36	15	11	36	1.84
33103828--33103872	21	2.1	21	95	0	81	37	15	8	37	1.79
33104283--33104362	42	1.9	42	92	0	133	30	23	12	33	1.92
33104348--33104783	88	5.0	88	89	0	622	23	26	23	26	2.00
33104373--33104684	44	7.1	43	64	13	143	24	27	23	25	2.00
33106151--33106311	52	3.2	52	62	18	129	37	6	5	49	1.53
33106125--33106321	101	2.0	100	94	4	346	36	6	7	49	1.57
33110034--33110067	10	3.3	10	87	4	50	67	8	0	23	1.18
33111323--33111387	34	1.9	34	87	6	96	56	0	9	33	1.31
33111478--33111512	19	1.9	18	88	11	54	60	2	2	34	1.26
33111482--33111567	25	3.5	25	75	9	95	50	4	8	37	1.53
33111482--33111557	24	3.3	23	75	12	75	51	5	7	35	1.54
33111607--33111642	15	2.3	15	90	4	54	66	5	0	27	1.13
33111614--33111642	15	1.9	15	100	0	58	68	0	0	31	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33111614--33111659	18	2.8	16	87	9	58	63	0	6	30	1.20
33112407--33112444	10	4.0	10	90	6	53	71	10	0	18	1.14
33112614--33112649	17	2.2	17	90	5	56	8	5	36	50	1.56
33113088--33113341	44	5.8	44	73	8	194	27	24	18	29	1.98
33113085--33114464	132	10.5	132	86	2	1860	27	24	19	29	1.98
33113936--33114397	44	10.5	44	65	11	194	27	24	18	29	1.98
33115726--33115758	13	2.3	15	85	15	52	12	15	0	72	1.12
33115726--33115758	7	4.7	7	85	14	50	12	15	0	72	1.12
33119941--33120364	211	2.0	210	96	0	785	36	16	13	33	1.88
33120718--33120782	34	1.9	34	87	6	96	56	0	9	33	1.31
33120873--33120907	19	1.9	18	88	11	54	60	2	2	34	1.26
33120877--33120962	25	3.5	25	75	9	95	50	4	8	37	1.53
33120877--33120952	24	3.3	23	75	12	75	51	5	7	35	1.54
33121002--33121037	15	2.3	15	90	4	54	66	5	0	27	1.13
33121009--33121037	15	1.9	15	100	0	58	68	0	0	31	0.89
33121009--33121054	18	2.8	16	87	9	58	63	0	6	30	1.20
33121801--33121838	10	4.0	10	90	6	53	71	10	0	18	1.14
33122008--33122043	17	2.2	17	90	5	56	8	5	36	50	1.56
33122235--33122265	10	3.1	10	90	0	53	51	0	0	48	1.00
33122245--33122329	36	2.4	35	86	2	116	51	0	5	42	1.26
33122511--33122672	3	54.0	3	100	0	324	33	0	0	66	0.92
33127157--33127219	30	2.1	30	81	0	72	17	30	25	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33136080--33136131	24	2.2	24	82	0	59	55	11	1	30	1.46
33140023--33140061	8	4.6	9	87	12	55	84	0	0	15	0.62
33140023--33140061	17	2.3	17	90	0	60	84	0	0	15	0.62
33140023--33140061	9	4.6	8	84	9	51	84	0	0	15	0.62
33140048--33140130	17	4.5	18	76	18	64	74	0	18	7	1.03
33140052--33140130	6	13.7	6	83	12	58	73	0	18	7	1.06
33140048--33140130	12	6.8	12	77	17	64	74	0	18	7	1.03
33140084--33140133	12	4.2	12	89	5	75	74	0	26	0	0.83
33140085--33140130	6	7.8	6	92	4	67	78	0	21	0	0.76
33144411--33144472	32	2.0	31	87	9	90	32	3	1	62	1.20
33144666--33144741	39	1.9	39	81	0	89	30	5	17	47	1.69
33144826--33144949	19	6.4	19	71	15	67	29	8	15	46	1.74
33150505--33150568	31	2.1	31	91	5	103	42	9	3	45	1.52
33158031--33158088	23	2.5	23	94	0	98	20	18	17	43	1.89
33158047--33158099	23	2.3	23	93	0	88	20	18	20	39	1.92
33181703--33181755	19	2.6	21	77	11	58	64	0	0	35	0.94
33183122--33183147	11	2.4	11	100	0	52	7	7	7	76	1.15
33184118--33184194	37	2.1	35	83	4	91	40	16	14	28	1.88
33185794--33185839	21	2.2	20	81	7	56	50	8	8	32	1.64
33188728--33188846	46	2.6	46	85	2	150	26	20	23	30	1.98
33196414--33196466	20	2.7	20	82	5	63	0	30	0	69	0.88
33197330--33197380	13	3.9	13	75	10	50	68	5	0	25	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33197740--33197779	20	2.0	21	85	5	55	57	10	2	30	1.45
33198382--33198420	19	2.1	19	90	0	60	48	7	23	20	1.75
33205102--33205142	21	2.0	21	90	0	64	19	29	21	29	1.98
33220478--33220520	22	2.0	22	95	0	77	32	4	20	41	1.73
33223783--33223825	18	2.5	17	80	3	50	27	0	9	62	1.25
33224914--33224946	15	2.2	15	94	0	57	33	0	3	63	1.10
33225248--33225297	20	2.5	20	80	6	57	22	4	38	36	1.73
33225306--33225337	14	2.3	14	94	0	55	37	9	15	37	1.80
33225946--33225987	21	2.0	21	85	4	57	61	7	7	23	1.47
33229264--33229306	18	2.4	17	77	11	50	58	9	0	32	1.30
33229290--33229314	10	2.5	10	100	0	50	56	8	0	36	1.29
33232150--33232228	33	2.4	33	89	0	122	45	17	20	16	1.85
33243378--33243411	18	1.9	17	88	5	50	64	0	2	32	1.08
33244921--33244975	26	2.1	26	96	0	101	41	14	21	21	1.89
33248399--33248454	8	6.9	8	82	11	69	25	0	3	71	1.02
33248396--33248449	26	2.2	25	80	16	67	25	0	3	70	1.04
33248388--33248454	16	4.1	16	81	11	73	28	0	4	67	1.10
33260038--33260090	12	4.6	12	74	9	56	66	0	33	0	0.92
33263747--33263799	20	2.6	20	82	17	65	62	0	15	22	1.32
33269564--33269624	29	2.1	29	96	0	113	50	11	6	31	1.64
33274486--33274527	13	3.0	14	79	6	50	45	14	0	40	1.45
33284718--33284748	14	2.2	14	94	0	53	48	12	0	38	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33289155--33289203	23	2.2	22	88	3	71	79	6	4	10	1.03
33289120--33289189	26	2.6	27	75	11	72	75	5	2	15	1.11
33289199--33289259	26	2.4	26	81	8	72	67	4	8	19	1.36
33299418--33299464	19	2.5	19	76	13	53	68	4	4	23	1.26
33299409--33299463	18	2.9	19	76	10	60	65	3	3	27	1.26
33299443--33299483	21	1.9	22	85	5	57	65	9	0	24	1.22
33314885--33314926	19	2.2	19	84	16	52	7	19	7	66	1.39
33316778--33316807	12	2.5	12	94	0	51	40	0	0	60	0.97
33318792--33318852	30	2.0	30	87	0	86	26	16	31	26	1.96
33323039--33323087	24	2.0	24	88	0	71	40	4	18	36	1.70
33329389--33329736	64	5.3	64	65	17	205	32	14	14	38	1.86
33329297--33329835	131	4.1	131	83	1	625	32	15	13	38	1.86
33329297--33329859	262	2.1	261	83	3	693	32	14	13	39	1.86
33330254--33330335	41	2.0	41	95	0	146	36	26	17	19	1.94
33340035--33340099	3	21.7	3	100	0	130	66	0	0	33	0.92
33342607--33342639	17	1.9	17	93	0	57	27	33	30	9	1.88
33343987--33344012	13	2.0	13	100	0	52	30	15	7	46	1.74
33356106--33356194	38	2.2	41	86	5	121	39	1	5	53	1.32
33358700--33358778	39	2.0	39	95	0	140	45	15	7	31	1.74
33359539--33359586	23	2.1	23	100	0	96	43	12	4	39	1.62
33362373--33362412	2	20.0	2	84	0	53	7	0	42	50	1.30
33365951--33366023	26	2.8	26	85	4	85	42	8	15	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33369606--33369646	21	1.9	22	85	5	57	39	19	7	34	1.80
33378987--33379177	42	4.6	41	80	3	184	27	18	25	28	1.98
33378993--33379192	84	2.4	84	77	1	204	27	19	25	28	1.99
33380775--33381279	240	2.1	237	86	2	715	43	12	12	32	1.79
33381709--33382027	107	3.0	108	91	2	484	32	17	16	32	1.93
33382432--33382472	4	10.0	4	85	15	57	73	0	4	21	1.02
33382915--33383001	3	28.3	3	74	13	70	60	3	4	31	1.33
33384280--33384306	12	2.2	12	100	0	54	77	7	0	14	0.97
33385633--33385658	13	2.0	13	100	0	52	69	0	15	15	1.20
33388356--33388429	31	2.3	32	79	9	80	41	10	10	36	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185