genome.fa.s5.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  53  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16357397--16357435	20	2.0	20	85	9	55	64	2	0	33	1.08
16364105--16364233	52	2.5	52	88	3	190	28	30	15	25	1.96
16365886--16366000	45	2.6	44	78	9	124	26	23	8	40	1.83
16370941--16370965	9	2.8	9	100	0	50	36	16	24	24	1.94
16372027--16372097	31	2.3	30	90	4	106	39	8	28	23	1.84
16374144--16374271	39	3.3	38	79	4	139	37	22	20	19	1.94
16374316--16374552	41	5.8	41	82	5	266	20	22	25	31	1.98
16374314--16374552	81	2.9	82	81	4	268	20	22	25	31	1.98
16374319--16374552	122	1.9	123	85	4	321	20	21	25	32	1.98
16375900--16375939	19	2.1	19	95	0	71	82	0	2	15	0.77
16375934--16375993	31	1.9	31	83	6	77	40	6	0	53	1.27
16376637--16376722	7	11.9	7	79	7	82	18	2	48	30	1.60
16376619--16376722	29	3.6	29	84	2	120	19	1	48	30	1.60
16376616--16376723	7	15.0	7	74	12	67	19	1	46	32	1.61
16380277--16380309	10	3.1	11	86	8	50	33	9	21	36	1.85
16380341--16380374	13	2.6	13	90	0	59	44	14	0	41	1.45
16380349--16380425	40	1.9	40	91	0	127	45	10	5	38	1.61
16380445--16380533	22	4.5	21	72	21	68	43	13	0	42	1.44
16380449--16380510	17	3.6	17	84	4	70	46	12	0	40	1.42
16380515--16381127	40	14.9	40	69	16	248	45	12	3	39	1.58
16380328--16381191	166	5.2	166	99	0	1703	45	12	2	39	1.56
16380554--16380696	39	3.9	35	78	12	117	45	11	1	41	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16380637--16380706	13	5.4	13	71	19	56	45	12	0	41	1.42
16380606--16380696	22	4.4	22	72	21	88	43	13	0	42	1.43
16380615--16380676	17	3.6	17	84	4	70	46	12	0	40	1.42
16380633--16381196	39	13.7	39	66	23	141	45	12	2	40	1.56
16380803--16380872	13	5.4	13	71	19	56	45	12	0	41	1.42
16380772--16380862	22	4.4	22	72	21	88	43	13	0	42	1.43
16380781--16380842	17	3.6	17	84	4	70	46	12	0	40	1.42
16380969--16381038	13	5.4	13	71	19	56	45	12	0	41	1.42
16380938--16381028	22	4.4	22	72	21	88	43	13	0	42	1.43
16380947--16381008	17	3.6	17	84	4	70	46	12	0	40	1.42
16381109--16381199	22	4.6	21	72	20	72	43	13	0	42	1.43
16381113--16381174	17	3.6	17	84	4	70	46	12	0	40	1.42
16381230--16381577	121	2.9	120	96	1	633	40	7	7	44	1.60
16381546--16381601	27	2.1	27	100	0	112	41	7	3	48	1.48
16381658--16381789	25	5.2	25	72	15	83	50	18	2	29	1.59
16381731--16381826	9	11.3	9	66	24	57	46	21	2	29	1.63
16381720--16381804	16	5.6	16	69	18	56	49	20	1	29	1.56
16387203--16387338	66	2.1	66	86	5	186	41	19	27	11	1.86
16387369--16387426	21	2.8	21	97	0	107	36	15	44	3	1.63
16387734--16388107	43	8.7	43	75	4	243	23	19	28	27	1.99
16387753--16388004	86	2.9	86	88	1	353	24	17	30	27	1.97
16387734--16387984	129	1.9	129	81	4	301	23	16	30	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16388192--16388234	22	2.0	22	90	0	68	44	23	18	13	1.86
16390105--16390166	26	2.4	26	86	0	88	24	27	8	40	1.83
16392326--16392380	27	2.0	27	100	0	110	36	10	25	27	1.89
16411271--16411317	12	3.8	12	88	2	67	53	23	6	17	1.66
16411271--16411317	25	1.9	24	86	4	67	53	23	6	17	1.66
16416165--16416207	16	2.5	18	77	7	54	58	0	13	27	1.37
16420836--16420963	69	1.9	68	88	1	193	49	5	3	42	1.41
16422278--16422329	25	2.1	24	89	3	77	21	25	21	32	1.98
16429264--16429320	30	1.9	30	82	13	73	45	3	1	49	1.29
16432943--16432975	17	1.9	17	88	11	50	33	15	33	18	1.92
16439787--16440193	35	12.1	34	80	9	426	42	18	21	18	1.90
16439787--16440127	67	5.0	67	93	1	547	41	18	21	18	1.90
16439828--16440203	67	5.6	66	88	5	226	41	18	22	18	1.90
16450865--16450923	27	2.2	27	87	0	82	32	10	20	37	1.86
16453289--16453322	12	2.8	12	86	4	50	70	5	2	20	1.21
16453289--16453323	13	2.8	13	91	4	54	68	5	2	22	1.24
16454195--16454227	13	2.8	12	86	13	50	72	3	18	6	1.18
16454303--16454333	15	2.1	15	94	5	55	64	0	29	6	1.18
16454303--16454348	12	3.4	14	80	17	60	67	0	28	4	1.10
16460417--16460814	45	8.8	45	82	7	443	22	20	15	41	1.90
16460506--16460578	24	3.1	24	63	28	57	24	20	15	39	1.91
16460415--16460814	91	4.4	91	85	2	484	23	20	15	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16460417--16460917	45	11.1	43	79	10	321	23	19	16	40	1.91
16466619--16466705	39	2.2	39	95	0	156	41	20	12	25	1.88
16467095--16467148	21	2.5	22	79	8	67	24	35	5	35	1.79
16470259--16470449	50	3.7	50	80	4	175	27	20	27	24	1.99
16470703--16470745	20	2.2	20	91	0	68	60	0	25	13	1.34
16475584--16475631	25	2.0	25	87	4	71	20	20	20	37	1.95
16475618--16475724	25	4.3	24	75	11	83	22	23	22	31	1.98
16475619--16475731	50	2.3	49	78	6	129	23	23	23	30	1.99
16480689--16480850	25	6.5	25	77	6	107	23	22	22	32	1.98
16480723--16480831	50	2.2	50	81	3	130	22	21	23	32	1.98
16488849--16489278	45	9.4	45	80	5	386	24	20	14	41	1.89
16490082--16490122	21	2.0	22	85	9	59	53	17	0	29	1.44
16507742--16507830	27	3.3	27	88	0	124	29	25	8	35	1.87
16512209--16512286	29	2.7	28	78	11	86	25	11	30	32	1.91
16512264--16512537	145	1.9	145	96	0	503	29	14	23	31	1.95
16514065--16514118	21	2.5	21	81	3	63	50	3	0	46	1.19
16519457--16519520	21	3.1	21	79	2	76	12	17	25	45	1.83
16523480--16523524	22	2.0	22	83	8	56	40	4	0	55	1.20
16530874--16530915	22	2.1	19	86	13	57	45	2	0	52	1.13
16539255--16539647	27	14.5	26	77	6	284	44	20	16	19	1.87
16539258--16539648	81	4.8	81	77	6	371	43	20	16	19	1.88
16539881--16539931	26	2.0	26	84	0	66	23	25	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16540063--16540269	28	7.4	28	84	4	251	24	26	20	29	1.99
16540063--16540263	84	2.4	85	87	3	291	24	26	20	28	1.99
16540232--16540297	33	2.0	33	82	5	80	28	27	18	25	1.98
16542927--16543499	27	21.2	27	86	3	742	43	21	15	19	1.87
16542927--16543499	108	5.3	108	95	1	983	43	21	15	19	1.87
16543895--16543963	33	2.1	33	97	0	129	20	23	23	33	1.97
16543908--16543995	33	2.6	33	83	1	95	23	25	23	27	2.00
16551322--16551460	23	6.0	23	75	3	127	22	17	20	38	1.93
16551322--16551460	69	2.0	69	85	2	190	22	17	20	38	1.93
16552355--16552396	12	3.5	12	100	0	84	26	7	23	42	1.80
16562274--16562343	25	2.8	25	88	0	104	25	20	24	30	1.99
16565211--16565244	15	2.3	15	89	0	50	55	11	8	23	1.63
16567935--16568157	23	9.7	23	75	0	169	19	14	21	45	1.85
16567928--16568148	46	4.9	46	82	1	223	19	13	20	46	1.84
16575965--16576022	11	5.2	11	87	2	80	24	32	0	43	1.55
16575965--16576040	22	3.4	23	85	8	95	26	31	0	42	1.56
16575964--16576038	33	2.2	33	84	9	98	25	32	0	42	1.55
16575964--16576040	11	6.9	11	75	21	72	25	31	0	42	1.55
16579904--16580391	23	22.0	22	80	7	549	48	25	1	25	1.59
16579902--16580391	89	5.5	87	82	7	576	48	25	1	25	1.59
16579904--16580393	133	3.7	134	84	7	448	47	25	1	25	1.59
16580740--16580786	7	6.7	7	95	0	85	40	42	0	17	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16589962--16590024	30	2.1	30	90	0	99	23	4	12	58	1.53
16593846--16593885	19	2.1	19	95	0	71	20	7	10	62	1.50
16595902--16595978	22	3.6	21	75	13	77	41	19	22	16	1.90
16595905--16596015	44	2.5	42	81	8	123	45	19	18	17	1.86
16598498--16598599	36	2.8	36	77	1	114	41	15	18	24	1.90
16598498--16598580	18	4.6	18	81	0	94	40	16	18	24	1.90
16599552--16599622	35	2.0	35	100	0	142	18	39	11	30	1.86
16603337--16603597	132	2.0	132	87	3	373	42	11	12	33	1.79
16604388--16604439	20	2.5	22	84	6	72	26	9	21	42	1.83
16608230--16608374	40	3.7	40	81	10	172	24	27	23	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185