genome.fa.s5.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  66  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20734335--20735476	376	3.0	375	87	2	1616	28	17	16	37	1.91
20735534--20735645	34	3.4	33	81	6	136	43	13	0	42	1.43
20736809--20736964	52	2.9	52	78	4	152	31	12	26	29	1.92
20737237--20737340	29	3.7	29	80	2	122	29	19	20	30	1.97
20737328--20737382	29	2.0	27	82	7	65	29	21	23	25	1.99
20745140--20745175	18	2.0	18	94	0	63	41	16	8	33	1.78
20745787--20745815	14	2.1	14	100	0	58	20	6	0	72	1.07
20747352--20747378	14	1.9	14	100	0	54	44	11	7	37	1.68
20791489--20791589	52	1.9	53	91	2	168	31	7	27	32	1.86
20804217--20804354	50	2.8	50	88	0	204	28	21	28	21	1.98
20807554--20807581	14	2.0	14	100	0	56	28	7	7	57	1.52
20809505--20809673	56	3.3	49	80	7	142	28	21	26	23	1.99
20825664--20825841	27	6.6	27	83	3	205	26	15	28	29	1.96
20825665--20825820	82	1.9	81	88	3	233	26	15	28	29	1.96
20825661--20825841	82	2.2	81	83	2	229	27	15	27	29	1.96
20833853--20834030	27	6.6	27	83	3	205	26	15	28	29	1.96
20833854--20834009	82	1.9	81	88	3	233	26	15	28	29	1.96
20833850--20834030	82	2.2	81	83	2	229	27	15	27	29	1.96
20839741--20840048	45	6.8	45	77	9	270	39	14	18	26	1.90
20839757--20840006	135	1.9	135	80	6	301	39	14	18	27	1.89
20840135--20840193	27	2.2	27	84	6	75	38	18	22	20	1.93
20842306--20842346	20	2.0	20	100	0	82	36	24	9	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20856304--20857067	76	10.1	76	99	0	1492	39	17	13	29	1.88
20857473--20857551	39	2.0	39	100	0	158	15	12	12	59	1.61
20864031--20864066	16	2.2	16	100	0	72	36	16	5	41	1.72
20868426--20868543	50	2.3	50	85	1	164	50	11	14	24	1.75
20868476--20869065	84	7.0	84	87	3	778	46	10	10	32	1.72
20868364--20868625	135	1.9	135	87	6	379	48	11	11	29	1.73
20868476--20869065	167	3.5	167	87	3	799	46	10	10	32	1.72
20868476--20869065	251	2.3	254	87	4	818	46	10	10	32	1.72
20868941--20869196	142	1.8	142	86	4	374	40	12	12	34	1.81
20873149--20873188	17	2.4	17	82	0	53	65	2	0	32	1.06
20879013--20879077	30	2.2	30	85	0	94	18	30	29	21	1.97
20880699--20880730	7	4.6	7	100	0	64	43	12	28	15	1.83
20886336--20886392	26	2.2	26	90	0	87	36	12	12	38	1.80
20893252--20893406	40	3.9	40	88	3	240	42	24	16	16	1.88
20893236--20893416	80	2.3	80	84	2	258	43	25	16	14	1.85
20894318--20894401	42	2.0	42	95	0	150	36	10	8	44	1.70
20894380--20894432	21	2.7	19	77	11	54	26	9	0	64	1.24
20894734--20894830	30	3.2	30	75	2	106	28	26	15	28	1.96
20903447--20903489	21	2.0	21	90	0	68	53	6	0	39	1.28
20906329--20906370	21	2.0	21	85	4	57	11	19	26	42	1.85
20906413--20906660	43	5.8	43	92	3	387	26	33	19	20	1.96
20906676--20906707	14	2.1	16	88	11	50	43	6	0	50	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20906932--20907022	43	2.1	43	87	2	130	43	9	10	35	1.73
20908111--20908135	2	12.5	2	100	0	50	52	48	0	0	1.00
20918812--20918851	14	2.9	14	88	3	55	27	22	17	32	1.96
20920370--20920593	49	4.4	50	78	8	168	24	25	21	28	1.99
20924787--20924827	7	5.9	7	100	0	82	43	0	0	56	0.99
20926046--20926119	29	2.5	31	86	8	100	22	13	16	47	1.81
20926071--20926144	29	2.5	29	82	4	85	25	14	13	45	1.82
20931199--20931277	37	2.1	37	90	0	122	25	31	18	24	1.98
20931394--20931575	47	3.8	47	87	1	247	28	31	8	31	1.86
20940508--20940601	46	2.0	46	100	0	188	26	17	25	30	1.97
20940909--20940942	6	5.7	6	100	0	68	35	0	0	64	0.94
20941352--20941423	21	3.5	20	70	17	58	58	2	4	34	1.32
20941359--20941432	22	3.5	21	72	18	64	56	2	4	36	1.32
20941338--20941434	42	2.4	39	75	14	106	55	2	4	38	1.31
20941442--20941481	19	2.2	18	86	4	53	62	2	7	27	1.35
20941464--20941508	19	2.2	19	84	11	54	64	0	4	31	1.13
20941482--20941534	19	2.9	18	78	16	65	60	0	9	30	1.28
20945998--20946026	12	2.3	13	94	5	51	27	6	0	65	1.18
20958035--20958075	22	2.0	22	85	9	59	58	2	2	36	1.24
20958730--20958786	21	2.7	21	76	10	71	33	15	14	36	1.88
20961270--20961443	44	3.9	44	81	5	190	44	14	18	22	1.86
20965294--20965356	17	3.5	17	69	12	54	49	11	3	36	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20965490--20965567	38	2.0	39	90	2	122	16	2	30	50	1.59
20975244--20975307	25	2.6	25	92	0	101	51	18	0	29	1.47
20975260--20975306	9	5.4	9	82	10	62	55	19	0	25	1.43
20975462--20975568	15	6.8	15	72	17	74	57	19	1	21	1.51
20975462--20975568	31	4.0	28	76	19	111	57	19	1	21	1.51
20975335--20975504	79	2.2	78	80	12	195	50	20	5	23	1.69
20975492--20975571	21	3.5	22	83	13	83	57	18	1	22	1.48
20975666--20975734	31	2.3	29	83	9	93	62	5	10	21	1.48
20975760--20975868	55	1.9	58	81	9	136	50	19	7	22	1.72
20985158--20985342	40	4.7	40	87	7	236	25	21	27	25	2.00
20985158--20985375	80	2.7	79	79	10	216	26	21	27	25	1.99
20986171--20986262	46	2.0	46	91	0	148	41	10	23	23	1.86
20992792--20992892	50	2.0	51	98	1	195	30	17	31	19	1.95
20993753--20993779	14	1.9	14	100	0	54	88	3	7	0	0.61
20994857--20995880	40	25.6	40	97	1	1871	25	20	27	27	1.99
20997399--20997740	174	2.0	174	95	0	612	27	16	23	33	1.95
20997687--20997885	107	1.9	107	93	0	344	25	19	24	30	1.98
21001967--21002129	66	2.5	66	84	4	204	40	17	26	14	1.89
21002105--21002149	21	2.1	21	84	8	56	37	17	40	4	1.70
21002325--21002356	10	3.3	10	95	4	57	31	0	6	62	1.20
21002316--21002356	19	2.1	20	78	17	50	29	0	4	65	1.13
21002461--21002601	43	3.3	42	81	3	156	26	17	28	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21002477--21002601	43	2.9	43	84	2	162	27	18	28	25	1.98
21002673--21002815	43	3.3	43	86	3	216	20	23	27	27	1.99
21002637--21002815	86	2.1	86	83	0	223	21	22	29	27	1.99
21002970--21003098	3	44.0	3	89	4	201	68	0	31	0	0.89
21003101--21003138	19	2.0	19	100	0	76	36	10	21	31	1.87
21003890--21003940	20	2.6	19	87	9	75	43	15	13	27	1.85
21004871--21004917	24	1.9	24	86	4	67	4	38	0	57	1.18
21004862--21004904	18	2.4	18	84	0	59	4	39	0	55	1.20
21005038--21005115	30	2.6	30	80	10	79	21	5	20	52	1.66
21005170--21005206	5	7.2	5	90	6	56	35	0	0	64	0.94
21009560--21009773	107	2.0	107	98	0	410	35	7	9	47	1.64
21012914--21012953	19	2.1	20	86	9	57	67	5	10	17	1.37
21016264--21016526	40	6.6	39	86	4	278	25	27	21	25	1.99
21016264--21016526	120	2.2	119	82	4	307	25	27	21	25	1.99
21016458--21016535	40	1.9	41	82	10	97	26	28	20	24	1.99
21024215--21024477	40	6.6	39	86	4	278	25	27	21	25	1.99
21024215--21024477	120	2.2	119	82	4	307	25	27	21	25	1.99
21024409--21024486	40	1.9	41	82	10	97	26	28	20	24	1.99
21036676--21036727	6	8.7	6	97	0	77	57	0	25	17	1.40
21036676--21036735	18	3.3	18	88	2	84	56	0	25	18	1.41
21036676--21036734	6	9.7	6	94	3	64	57	0	23	18	1.40
21044609--21044650	6	6.8	6	91	2	66	54	0	28	16	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21045019--21045093	37	2.0	37	94	0	132	29	22	26	21	1.99
21050091--21050120	2	15.0	2	92	0	51	50	3	46	0	1.18
21050762--21050839	41	1.9	41	94	0	138	23	12	29	34	1.92
21060926--21060966	18	2.3	18	86	0	64	39	31	4	24	1.76
21065988--21066053	20	3.3	20	71	0	60	31	21	31	15	1.94
21066028--21066149	40	3.0	39	81	3	145	36	15	30	17	1.91
21066061--21066123	20	3.2	20	80	8	74	38	14	28	19	1.90
21066035--21066139	20	5.3	19	67	18	61	38	15	29	17	1.90
21069025--21069162	39	3.5	39	94	2	224	44	22	2	29	1.67
21075586--21075614	15	1.9	15	100	0	58	41	6	24	27	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185