genome.fa.s5.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  20  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5508669--5508699	16	2.0	16	93	6	55	38	0	29	32	1.57
5509354--5509403	11	4.6	10	82	7	55	40	50	4	6	1.46
5509355--5509403	22	2.2	22	92	0	80	38	51	4	6	1.46
5513511--5513601	48	1.9	47	88	2	137	19	17	25	37	1.94
5515384--5515613	49	4.8	50	76	10	246	26	16	24	33	1.96
5515384--5515613	93	2.4	93	88	5	318	26	16	24	33	1.96
5521125--5521152	9	3.1	9	100	0	56	46	10	10	32	1.73
5522027--5522424	197	2.0	199	92	3	669	36	19	12	31	1.89
5522382--5522407	5	5.2	5	100	0	52	19	19	19	42	1.90
5524150--5524222	32	2.3	32	85	4	94	31	15	16	36	1.90
5525553--5525599	23	2.0	23	100	0	94	8	8	34	48	1.64
5533972--5534015	13	3.1	14	78	15	54	54	0	0	45	0.99
5533978--5534014	16	2.3	16	86	13	58	59	0	0	40	0.97
5533972--5534027	29	2.0	27	83	16	69	53	3	0	42	1.18
5535989--5536026	18	2.2	17	86	13	51	18	0	0	81	0.69
5538138--5538199	31	2.0	31	90	6	99	12	24	24	38	1.90
5538242--5538283	21	2.0	21	85	0	57	21	16	9	52	1.72
5540264--5540448	101	1.8	102	91	3	311	23	17	27	31	1.97
5540260--5540455	51	3.9	51	81	4	218	23	17	28	30	1.97
5540370--5540450	26	3.2	26	62	28	64	23	14	28	33	1.94
5540452--5540546	45	2.1	45	92	0	154	28	17	22	31	1.97
5547677--5547790	41	2.8	41	89	1	167	21	28	15	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5551064--5551110	24	2.0	24	100	0	94	29	6	21	42	1.77
5560460--5560517	10	5.6	10	78	8	53	58	1	1	37	1.18
5560457--5560495	20	2.0	20	89	0	60	61	5	2	30	1.31
5561208--5561241	14	2.4	14	90	5	50	0	2	8	88	0.62
5564132--5564165	16	2.2	15	89	5	50	55	0	0	44	0.99
5567780--5567819	21	1.9	21	89	0	62	22	25	22	30	1.99
5567859--5567900	20	2.1	20	100	0	84	52	14	23	9	1.71
5573533--5573568	18	2.0	18	100	0	72	27	11	16	44	1.82
5580040--5580101	31	2.1	30	82	17	76	45	8	17	29	1.77
5581626--5581655	16	1.9	16	93	6	53	50	20	0	30	1.49
5583679--5583851	50	3.5	50	80	3	163	28	23	27	20	1.99
5591211--5591448	50	4.7	50	80	5	185	29	21	26	21	1.99
5591328--5591457	49	2.6	48	78	10	138	32	19	25	23	1.97
5606442--5606470	12	2.3	13	94	5	51	65	6	6	20	1.40
5610164--5610249	25	3.4	25	76	13	79	30	23	22	24	1.99
5637463--5637515	27	2.0	27	85	7	72	45	18	18	16	1.86
5640504--5640613	40	2.8	40	91	0	175	22	27	21	28	1.99
5640597--5640631	18	1.9	18	100	0	70	28	25	17	28	1.97
5640554--5640671	58	2.0	58	95	0	209	24	27	19	28	1.99
5640612--5640706	40	2.4	40	98	0	181	26	27	18	27	1.98
5640514--5640706	98	2.0	98	95	0	350	25	27	19	27	1.99
5651677--5651861	101	1.8	101	88	5	284	23	17	28	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5651671--5651859	51	3.8	48	82	4	216	23	17	29	29	1.97
5651782--5651863	26	3.2	26	63	27	66	24	14	29	31	1.95
5653687--5653870	92	2.0	92	100	0	368	46	5	22	25	1.73
5663279--5663313	17	2.1	17	100	0	70	51	8	17	22	1.72
5667119--5667158	19	2.1	19	85	0	53	15	2	15	67	1.34
5680413--5680517	39	2.6	39	86	5	122	24	22	27	24	2.00
5680373--5680536	40	4.1	40	80	12	169	25	23	27	24	2.00
5680373--5680523	79	1.9	80	82	6	191	25	23	27	23	2.00
5688430--5688655	40	5.7	40	91	2	303	24	22	28	25	1.99
5701118--5701142	13	1.9	13	100	0	50	36	16	32	16	1.90
5702463--5702534	20	3.3	20	65	20	54	33	30	18	18	1.94
5717136--5717180	24	1.9	23	82	13	56	33	26	6	33	1.83
5719155--5719328	46	3.8	45	72	13	147	34	29	15	20	1.94
5719163--5719335	93	1.9	93	88	0	265	33	29	16	20	1.95
5727123--5727162	19	2.1	19	100	0	80	52	17	25	5	1.64
5734607--5734808	101	2.0	101	98	1	388	18	22	12	46	1.83
5734758--5734820	33	1.9	33	84	12	85	12	26	6	53	1.62
5734817--5734902	27	3.2	26	79	12	93	12	17	1	68	1.27
5734838--5734935	12	7.6	12	71	14	61	12	20	1	66	1.30
5734838--5734902	28	2.4	27	87	7	87	12	18	0	69	1.19
5734859--5734945	24	3.5	24	71	12	68	10	24	1	64	1.32
5738565--5738629	20	3.3	19	73	16	51	38	16	21	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5741340--5741377	19	2.0	19	100	0	76	36	0	31	31	1.58
5744147--5744234	30	2.9	30	74	0	104	28	15	27	28	1.96
5744747--5744772	12	2.2	12	100	0	52	53	15	0	30	1.42
5746436--5746466	12	2.6	12	100	0	62	25	16	12	45	1.83
5746527--5746576	6	8.2	6	81	16	50	2	20	2	76	0.99
5746516--5746586	37	1.9	37	86	11	101	2	18	2	76	1.04
5746512--5746572	16	3.8	16	77	14	63	3	19	1	75	1.03
5751611--5751897	144	2.0	144	93	2	497	35	11	21	31	1.89
5751849--5751923	22	3.3	22	65	17	62	32	10	30	26	1.90
5751849--5751951	47	2.2	47	94	0	179	33	7	32	27	1.85
5759325--5759366	18	2.2	20	83	8	52	71	7	7	14	1.29
5769073--5769337	132	2.0	132	98	0	512	35	20	13	31	1.91
5771052--5771148	30	3.2	30	71	8	90	27	15	28	27	1.96
5772073--5772100	4	7.0	4	100	0	56	75	0	0	25	0.81
5772094--5772119	6	4.3	6	100	0	52	84	0	0	15	0.62
5772425--5772471	20	2.3	20	85	0	67	29	36	12	21	1.91
5774802--5775083	142	2.0	142	96	0	519	31	16	19	32	1.94
5775100--5775151	23	2.3	22	75	21	54	9	23	1	65	1.32
5779276--5779309	4	8.0	4	90	9	50	73	2	0	23	0.97
5783715--5783814	35	2.8	35	72	8	87	14	18	12	56	1.68
5787715--5787803	44	2.0	44	93	0	151	39	11	14	34	1.82
5788483--5788818	168	2.0	168	94	0	582	43	12	18	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5802655--5802709	22	2.5	21	80	11	65	0	32	1	65	1.03
5802657--5802701	22	2.1	21	91	4	72	0	33	2	64	1.06
5802767--5802895	27	4.8	26	84	5	159	26	35	18	19	1.95
5802787--5802892	53	2.0	54	90	1	169	27	37	17	16	1.92
5802781--5802895	27	4.3	27	88	3	160	27	35	19	17	1.94
5806677--5806746	23	3.2	23	66	22	69	47	5	21	25	1.73
5806662--5806746	42	2.0	42	100	0	170	50	4	21	23	1.67
5806668--5806733	19	3.3	19	66	22	53	50	4	21	24	1.67
5814817--5814914	48	2.0	48	92	0	160	23	30	12	33	1.91
5825786--5825823	17	2.3	17	95	4	69	47	5	18	28	1.70
5830231--5830267	15	2.3	17	86	9	51	51	10	0	37	1.37
5840432--5840469	19	2.0	20	89	5	60	31	15	7	44	1.75
5844955--5845194	50	4.7	50	81	6	243	22	27	21	28	1.99
5859483--5859537	22	2.3	25	84	12	71	50	0	7	41	1.30
5863846--5863921	29	2.6	29	84	15	104	15	28	1	53	1.50
5870376--5870429	25	2.2	25	86	6	74	66	9	11	12	1.44
5873000--5873322	97	3.3	96	76	12	318	20	32	19	27	1.97
5872989--5873322	50	6.8	50	81	3	383	20	32	19	27	1.97
5872990--5873322	147	2.3	147	89	0	495	20	32	19	27	1.97
5877449--5877704	141	1.8	141	98	0	494	32	22	14	30	1.94
5879080--5879266	50	3.8	48	80	4	205	19	31	21	27	1.98
5879080--5879261	97	1.8	97	84	3	247	19	30	20	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5888388--5888416	14	2.1	14	93	6	51	68	0	13	17	1.20
5890292--5890331	21	2.0	21	85	5	55	15	32	7	45	1.74
5893719--5894578	279	3.1	279	97	1	1585	52	5	7	33	1.54
5894557--5894595	14	2.8	14	92	0	60	64	0	2	33	1.08
5896191--5896303	44	2.6	44	77	5	122	23	25	23	26	2.00
5896104--5896560	217	2.1	216	85	4	600	28	24	19	27	1.99
5896546--5897164	128	4.8	128	93	1	954	25	23	18	32	1.97
5899346--5899395	16	2.8	19	73	17	52	6	10	10	74	1.23
5904033--5904080	23	2.1	22	85	11	62	60	6	0	33	1.22
5917771--5919700	965	2.0	965	100	0	3860	28	15	19	36	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185