genome.fa.s5.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  133  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40874151--40874356	101	2.0	101	96	0	376	33	18	16	31	1.93
40881219--40881251	3	11.0	3	100	0	66	66	0	0	33	0.92
40881384--40881424	21	2.0	21	85	0	55	43	0	2	53	1.13
40881381--40881430	21	2.4	21	75	15	50	44	0	2	54	1.11
40881456--40881495	17	2.2	19	86	13	57	60	0	0	40	0.97
40881517--40881568	26	2.0	27	84	3	70	53	1	1	42	1.23
40881511--40881551	22	1.9	21	85	5	55	51	2	0	46	1.14
40881569--40881611	22	2.0	22	86	9	61	44	0	2	53	1.13
40888660--40888687	14	2.0	14	100	0	56	50	0	21	28	1.49
40891609--40891656	20	2.3	21	85	7	62	56	0	6	37	1.25
40893651--40893689	20	2.0	20	89	0	60	30	25	35	7	1.84
40901891--40901924	14	2.5	14	95	4	61	14	0	35	50	1.44
40902054--40902100	22	2.1	23	84	4	60	70	6	6	17	1.30
40904032--40904096	27	2.4	27	73	17	62	12	12	3	72	1.24
40908813--40908842	15	1.9	16	93	6	53	26	0	0	73	0.84
40922770--40922831	26	2.4	26	86	0	88	33	12	16	37	1.87
40922894--40922957	31	2.0	33	82	11	80	39	12	28	20	1.89
40923040--40923072	17	1.9	17	93	0	57	42	6	0	51	1.26
40931575--40931604	13	2.3	13	94	0	51	23	10	13	53	1.69
40935279--40935320	9	4.7	9	87	0	66	45	19	9	26	1.80
40935397--40935450	18	2.9	18	80	2	63	12	1	44	40	1.54
40936136--40936199	30	2.1	30	100	0	128	51	15	3	29	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40937949--40938041	42	2.2	42	80	0	105	16	23	20	39	1.91
40945814--40945857	20	2.1	21	87	4	63	68	0	2	29	1.02
40947853--40947892	21	1.9	21	90	10	64	67	5	0	27	1.11
40948022--40948054	12	2.8	12	86	13	50	30	0	3	66	1.06
40950482--40950506	2	12.5	2	100	0	50	52	0	0	48	1.00
40965856--40965987	41	3.2	41	78	15	137	33	24	15	27	1.95
40967914--40967963	25	1.9	27	84	8	68	40	12	10	38	1.76
40969927--40970042	43	2.7	43	84	7	155	22	18	30	28	1.98
40971352--40971387	15	2.5	14	86	8	54	44	8	0	47	1.33
40980864--40980900	18	2.1	18	89	0	56	56	13	0	29	1.37
40981058--40981126	27	2.5	28	81	9	72	28	31	1	37	1.66
40981444--40981480	19	1.9	19	94	0	65	29	8	27	35	1.85
40987104--40987148	23	2.0	23	83	8	58	44	13	2	40	1.56
40992079--40992104	9	2.9	9	100	0	52	46	46	7	0	1.31
40993530--40993555	2	13.0	2	100	0	52	50	0	0	50	1.00
40993559--40993623	31	2.1	30	83	13	80	27	10	4	56	1.53
41000085--41000129	23	2.0	23	83	8	58	44	13	2	40	1.56
41010688--41010733	24	2.0	23	86	4	65	39	15	8	36	1.78
41011279--41011316	19	2.0	19	94	0	67	31	7	26	34	1.85
41014764--41014816	23	2.3	23	77	6	54	60	0	5	33	1.20
41017264--41017300	18	2.1	18	90	5	58	16	27	40	16	1.89
41019303--41019348	21	2.1	21	88	4	65	21	23	21	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41022844--41022931	28	3.1	28	82	6	88	30	25	22	21	1.99
41023069--41023118	26	1.9	26	95	0	91	44	24	20	12	1.85
41023293--41023603	27	11.5	27	81	7	301	23	16	17	43	1.88
41028421--41028544	32	3.9	32	83	0	140	41	17	17	23	1.90
41028690--41028747	24	2.4	24	82	0	80	46	24	6	22	1.76
41028770--41029011	27	9.0	27	79	4	222	25	18	19	36	1.94
41029101--41029138	19	2.0	19	100	0	76	15	31	26	26	1.96
41029791--41029932	32	4.5	32	73	4	90	40	17	17	23	1.90
41029806--41029929	32	3.9	32	75	8	117	40	16	17	25	1.90
41030113--41030161	24	2.0	24	88	0	71	42	22	8	26	1.81
41030198--41030484	27	10.6	27	83	3	308	24	17	20	37	1.93
41030204--41030473	109	2.5	108	83	5	346	23	17	21	37	1.94
41036923--41036982	28	2.1	28	90	0	93	31	28	21	18	1.97
41037304--41037364	27	2.3	27	85	0	77	19	16	26	37	1.93
41037345--41037676	27	12.3	27	85	3	400	22	16	18	43	1.88
41041280--41041459	42	4.3	42	71	12	152	27	25	10	37	1.88
41041320--41041504	85	2.2	85	100	0	370	26	26	11	35	1.90
41046994--41047213	28	7.8	29	73	8	166	49	7	18	24	1.73
41050167--41050296	64	2.0	65	93	1	226	33	16	13	36	1.89
41055219--41055256	13	2.9	13	85	11	51	52	2	13	31	1.54
41056961--41056999	19	2.1	19	90	0	60	12	2	33	51	1.54
41062595--41062923	27	12.2	27	83	6	328	44	20	17	17	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41062595--41062923	81	4.1	80	81	8	375	44	20	17	17	1.87
41063102--41063176	26	2.9	26	83	0	96	17	22	21	38	1.93
41071718--41071751	18	1.9	18	94	5	61	70	0	23	5	1.09
41087355--41087391	19	2.0	19	94	5	67	40	0	5	54	1.24
41087355--41087408	19	2.9	18	86	8	65	42	0	5	51	1.25
41088632--41088657	5	5.2	5	100	0	52	19	0	0	80	0.71
41088632--41088665	15	2.2	15	89	5	50	23	0	0	76	0.79
41088848--41088978	30	4.4	30	77	6	115	30	18	6	44	1.76
41089668--41089713	19	2.3	20	85	3	67	69	0	28	2	1.00
41089670--41089715	16	2.9	16	78	18	51	71	0	26	2	0.97
41089684--41089733	19	2.7	19	82	11	52	74	0	22	4	0.99
41089913--41089955	19	2.4	19	80	7	54	20	48	30	0	1.50
41090539--41090803	17	14.9	16	66	19	91	31	14	11	42	1.81
41090604--41090681	37	2.3	32	80	10	84	38	16	8	35	1.80
41090535--41090720	18	10.5	18	64	17	86	36	14	9	40	1.78
41090677--41090757	40	2.0	40	86	9	112	35	12	11	40	1.78
41099033--41099700	75	8.7	76	84	8	745	29	15	20	34	1.94
41100149--41100220	29	2.4	29	86	2	90	33	15	4	47	1.64
41100726--41100776	18	2.8	19	79	8	61	74	1	23	0	0.92
41100904--41100968	10	6.3	10	75	15	53	75	0	23	1	0.89
41100903--41100965	19	3.2	20	80	13	69	73	0	25	1	0.93
41100924--41100969	12	4.0	12	81	15	53	78	0	21	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41100905--41100950	16	2.9	16	78	18	51	71	0	26	2	0.97
41101288--41101324	16	2.3	16	90	9	58	81	2	16	0	0.81
41101287--41101329	16	2.5	17	82	17	54	81	2	16	0	0.79
41101286--41101336	16	3.0	16	76	18	50	78	1	19	0	0.85
41101796--41102051	17	14.5	17	69	16	141	29	12	12	45	1.79
41101903--41102005	39	2.8	37	80	12	113	33	13	12	40	1.82
41103875--41103908	16	2.1	16	88	0	50	50	14	17	17	1.79
41106710--41106750	21	2.0	21	90	0	64	29	21	29	19	1.98
41108656--41108689	16	2.1	16	88	0	50	50	14	17	17	1.79
41117175--41117891	114	6.3	114	84	6	807	30	18	23	27	1.98
41117997--41118032	18	2.0	18	89	10	56	25	0	5	69	1.10
41118093--41118122	10	2.8	11	90	10	53	56	0	0	43	0.99
41118943--41119022	7	11.3	7	86	1	106	6	0	52	41	1.27
41118948--41119034	21	4.1	21	88	5	106	6	0	47	45	1.29
41121609--41121672	31	2.1	31	96	0	119	39	10	18	31	1.86
41126546--41126615	21	3.3	21	86	4	88	41	20	35	2	1.67
41126977--41127261	43	6.7	42	89	4	394	22	22	21	34	1.97
41131449--41131678	92	2.6	89	85	6	277	37	16	12	33	1.86
41132166--41132318	77	2.0	77	96	0	279	28	2	35	33	1.71
41133650--41134228	27	21.5	27	87	0	685	34	18	21	25	1.96
41134265--41134323	24	2.5	24	77	5	66	20	5	23	50	1.67
41134448--41134498	26	2.0	26	88	0	75	15	23	27	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41134494--41134682	32	5.9	31	83	3	189	22	20	18	38	1.94
41134497--41134682	64	2.9	64	85	0	237	22	20	18	38	1.94
41134494--41134696	96	2.1	95	82	0	235	22	20	18	38	1.93
41134688--41134734	22	2.1	22	84	0	58	19	17	17	46	1.84
41135698--41135769	9	7.4	9	73	14	63	62	2	5	29	1.32
41135674--41135751	21	3.8	21	78	11	72	61	1	6	30	1.29
41135696--41135769	20	3.8	20	76	13	73	63	2	5	28	1.30
41135737--41135780	18	2.3	19	88	7	63	61	6	6	25	1.46
41135921--41136096	9	18.3	10	68	17	72	31	4	2	61	1.28
41135920--41136046	28	4.5	28	72	15	109	31	4	1	62	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185