genome.fa.s5.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  32  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9519506--9519540	18	1.9	18	88	11	54	45	0	14	40	1.45
9522208--9522249	22	1.9	22	85	0	57	26	7	7	59	1.50
9526917--9526949	10	3.4	10	91	4	50	21	0	6	72	1.05
9526917--9526988	19	3.8	19	80	5	74	29	2	2	65	1.21
9526917--9527190	9	29.4	9	66	18	82	34	3	2	59	1.27
9526934--9526978	20	2.4	19	81	7	56	33	2	0	64	1.06
9527059--9527125	27	2.4	27	87	7	91	32	1	4	61	1.25
9527054--9527121	35	1.9	35	82	8	84	35	1	2	60	1.21
9527136--9527183	21	2.4	19	77	12	51	27	2	0	70	0.98
9527141--9527183	21	2.1	20	86	4	59	23	2	0	74	0.93
9527068--9527190	27	4.5	27	75	16	94	30	1	1	65	1.11
9528249--9528327	38	2.1	38	100	0	158	50	7	12	29	1.68
9531695--9532131	218	2.0	218	100	0	874	35	9	28	27	1.88
9534970--9535116	74	2.0	74	100	0	294	48	12	12	26	1.75
9537752--9537785	11	3.1	11	82	0	50	11	23	38	26	1.89
9539914--9540004	40	2.3	40	96	0	164	37	5	35	21	1.77
9545259--9545319	30	2.0	30	87	0	86	45	13	13	27	1.80
9555566--9555662	25	3.8	26	86	5	126	24	20	27	26	1.99
9557107--9557222	54	2.1	54	85	0	151	25	24	31	19	1.98
9559402--9559444	22	1.9	23	86	13	63	32	16	9	41	1.80
9568337--9568445	52	2.1	52	91	3	175	37	16	12	33	1.87
9581171--9581195	10	2.5	10	100	0	50	72	16	12	0	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9582457--9582548	38	2.4	39	90	3	150	45	9	8	35	1.68
9588670--9588758	46	2.0	43	82	12	108	35	3	22	38	1.71
9590050--9590076	8	3.4	8	100	0	54	59	0	0	40	0.98
9594041--9594107	34	1.9	35	90	3	109	34	8	10	46	1.70
9600038--9600109	25	2.9	25	80	12	85	38	15	23	22	1.92
9600024--9600112	25	3.6	24	76	13	83	35	15	24	23	1.94
9605583--9605740	85	1.9	84	86	7	230	25	21	22	30	1.99
9605713--9605958	44	5.7	43	72	9	164	25	19	22	32	1.97
9605629--9606010	129	3.0	129	86	1	507	25	19	22	32	1.97
9620488--9620528	20	2.1	19	90	4	64	46	0	17	36	1.48
9621403--9621521	50	2.4	50	95	0	211	22	15	22	39	1.91
9626137--9626198	2	31.5	2	77	9	56	45	4	1	48	1.33
9626485--9626522	20	1.9	20	84	10	51	26	10	2	60	1.43
9626555--9626981	107	4.0	107	83	5	544	30	15	17	37	1.91
9626556--9626972	106	3.9	107	84	7	553	29	15	17	36	1.91
9638536--9638715	45	4.0	45	87	0	243	30	15	23	30	1.95
9638738--9639179	85	5.2	85	76	9	421	29	22	22	26	1.99
9638738--9639186	44	10.5	43	74	10	357	29	22	22	25	1.99
9638726--9639141	214	1.9	212	84	6	536	29	22	21	25	1.99
9638816--9639193	129	2.9	129	92	1	614	29	22	22	25	1.99
9640873--9641299	108	4.0	108	89	1	646	30	16	17	35	1.92
9645882--9645919	20	1.9	20	100	0	76	47	5	26	21	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9647823--9647885	29	2.2	29	88	0	90	23	25	12	38	1.90
9649105--9649143	12	3.2	12	85	0	51	20	23	5	51	1.67
9656478--9656516	12	3.2	12	85	0	51	20	23	5	51	1.67
9656766--9656956	50	3.7	50	82	4	220	24	27	21	26	1.99
9663745--9663920	27	6.5	27	82	3	194	19	17	18	44	1.86
9663744--9663920	81	2.2	81	87	2	257	19	16	18	44	1.87
9665820--9666155	146	2.3	148	79	6	335	27	14	20	37	1.91
9666856--9666886	10	3.0	10	90	9	53	29	3	0	67	1.06
9668571--9668622	13	4.0	13	82	5	61	44	7	1	46	1.43
9668651--9668762	36	3.4	36	70	25	127	42	8	7	41	1.61
9668594--9668775	63	2.9	63	98	0	346	41	8	7	42	1.62
9668767--9668887	39	3.1	38	83	8	102	42	12	0	45	1.42
9668795--9668887	38	2.4	39	94	1	161	43	12	0	44	1.43
9668868--9669396	9	58.6	9	73	16	384	44	19	1	34	1.60
9668960--9669170	64	3.4	56	88	8	190	45	19	2	32	1.63
9668889--9669144	64	4.0	64	91	6	369	44	21	1	32	1.63
9669150--9669216	28	2.4	28	97	0	125	46	14	2	35	1.61
9672538--9672597	30	2.0	30	96	0	111	26	15	33	25	1.95
9674995--9675028	12	2.8	12	95	0	59	44	14	38	2	1.61
9675464--9675748	42	6.7	42	83	5	281	28	23	19	28	1.98
9675464--9675757	127	2.3	126	83	5	344	27	23	19	30	1.98
9675463--9675774	85	3.7	84	84	5	335	27	23	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9682865--9683264	200	2.0	200	99	0	791	25	10	21	43	1.83
9684703--9684815	41	2.8	41	95	0	208	25	21	27	25	1.99
9692429--9692579	41	3.7	41	94	0	266	26	21	27	24	1.99
9692429--9692616	41	4.6	41	90	0	259	25	19	27	27	1.99
9694713--9694773	27	2.3	27	100	0	122	42	9	11	36	1.74
9698250--9698303	24	2.2	24	81	15	67	37	5	0	57	1.22
9698044--9698321	147	1.9	147	81	4	337	43	10	4	41	1.59
9698694--9698726	15	2.3	14	94	5	57	84	0	15	0	0.61
9702925--9703149	51	4.4	52	78	7	214	28	25	17	27	1.98
9710472--9710502	4	7.8	4	92	0	53	48	3	0	48	1.17
9716922--9717121	27	7.4	27	82	5	210	42	20	19	18	1.89
9716919--9717121	81	2.5	81	86	4	268	42	19	18	18	1.89
9716921--9717121	54	3.7	53	82	4	240	42	19	18	18	1.89
9719521--9719566	16	2.9	16	75	12	51	21	15	21	41	1.90
9724098--9724134	20	1.9	18	89	10	56	54	5	0	40	1.24
9724973--9724997	10	2.5	10	100	0	50	72	8	0	20	1.10
9725009--9725063	27	2.0	27	82	6	67	43	3	1	50	1.30
9737539--9737788	124	2.0	122	86	6	351	43	12	15	28	1.84
9744615--9744651	17	2.2	17	90	0	56	29	18	21	29	1.97
9744798--9744951	78	2.0	78	89	2	238	30	12	20	37	1.89
9747413--9747561	75	2.0	75	87	0	217	40	16	14	28	1.88
9747413--9747591	75	2.4	75	82	1	189	39	18	13	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9753318--9753342	3	8.3	3	100	0	50	0	32	0	68	0.90
9758823--9758856	18	1.9	17	94	5	59	44	0	2	52	1.16
9771240--9771944	44	16.2	43	71	12	284	28	20	22	28	1.98
9771141--9771943	217	3.7	217	93	0	1363	29	20	22	28	1.98
9771202--9771750	84	6.4	85	68	14	248	28	20	22	28	1.98
9772262--9772324	33	1.9	33	90	3	101	47	30	7	14	1.72
9773260--9773370	56	2.0	56	96	0	204	25	15	18	41	1.89
9775268--9775327	30	2.0	30	84	9	79	33	5	8	53	1.53
9776548--9776595	15	3.4	14	83	11	62	10	0	41	47	1.37
9776548--9776598	7	7.3	7	86	8	68	9	0	41	49	1.36
9776800--9776874	37	2.0	39	87	10	111	62	0	4	33	1.14
9777195--9777231	18	2.0	19	94	5	67	13	0	37	48	1.43
9777056--9777720	225	3.0	223	90	5	1010	35	3	18	43	1.66
9779076--9779112	18	2.1	18	89	0	56	40	10	27	21	1.86
9780951--9781046	11	9.0	11	73	14	76	43	2	30	23	1.65
9780935--9781034	51	2.0	51	92	4	166	46	1	28	25	1.60
9781841--9781901	30	1.9	33	87	12	92	49	0	0	50	1.00
9781858--9781934	34	2.5	29	75	17	73	55	0	1	42	1.07
9783808--9783853	9	4.7	9	84	15	56	71	0	6	21	1.08
9797091--9797359	70	3.8	70	89	0	376	35	23	18	23	1.95
9797091--9797387	36	8.4	36	74	8	198	35	23	17	23	1.95
9799155--9799416	39	6.6	39	84	5	293	26	21	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9807185--9807446	39	6.7	40	87	7	337	25	22	27	24	2.00
9811786--9811818	5	6.6	5	100	0	66	18	0	0	81	0.68
9823054--9823090	18	2.0	19	89	5	58	5	40	2	51	1.39
9833513--9833578	27	2.4	27	94	2	114	28	4	13	53	1.60
9833782--9833832	23	2.2	23	100	0	102	21	9	21	47	1.79
9834753--9834785	15	2.1	16	94	5	59	57	0	0	42	0.98
9844700--9844724	2	12.5	2	100	0	50	0	0	48	52	1.00
9845248--9845407	41	3.9	41	90	0	257	27	20	23	28	1.99
9846728--9846837	53	2.1	54	84	1	141	39	12	23	24	1.90
9846947--9847036	28	3.2	28	66	9	74	42	18	16	22	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185