genome.fa.s5.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  21  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5925989--5926026	15	2.4	16	91	4	60	63	5	2	28	1.30
5927683--5927827	58	2.5	58	87	0	191	20	26	11	41	1.86
5943375--5943486	50	2.2	50	80	0	125	26	24	22	26	2.00
5943388--5943929	267	2.0	267	87	0	769	27	21	25	25	1.99
5945568--5945634	30	2.3	28	82	12	82	28	2	1	67	1.14
5945575--5945630	15	3.9	14	75	9	58	28	3	1	66	1.19
5950286--5950410	62	2.0	62	90	0	196	33	6	13	46	1.69
5953538--5953586	25	1.9	26	83	4	64	22	12	6	59	1.55
5955555--5955590	5	7.2	5	87	0	54	75	0	22	2	0.94
5955555--5955597	10	4.4	10	83	13	54	74	0	23	2	0.93
5955550--5955590	20	2.0	20	90	0	64	73	0	19	7	1.07
5956301--5956326	5	5.2	5	100	0	52	42	19	19	19	1.90
5957352--5957388	9	4.1	9	89	0	56	29	8	13	48	1.71
5957904--5957939	11	3.5	11	78	21	51	58	0	5	36	1.22
5957870--5957938	20	3.5	20	80	11	70	50	7	4	37	1.50
5957905--5957944	19	2.1	19	100	0	80	62	0	5	32	1.17
5959596--5959625	15	2.0	15	100	0	60	66	6	6	20	1.38
5961124--5961156	16	2.0	17	94	5	59	72	0	0	27	0.85
5961404--5961860	229	2.0	229	99	0	905	40	17	14	27	1.88
5961834--5961902	19	3.8	19	83	7	83	36	14	8	40	1.77
5962002--5962033	14	2.4	14	94	5	57	15	0	6	78	0.95
5967317--5967494	27	6.6	27	84	3	205	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5967338--5967493	82	1.9	81	88	3	233	29	28	15	26	1.96
5974470--5974660	51	3.7	50	83	5	213	35	14	25	25	1.93
5974470--5974660	102	1.9	102	85	4	269	35	14	25	25	1.93
5975965--5976032	30	2.3	30	89	0	100	42	14	25	17	1.87
5978440--5978469	13	2.3	13	94	0	51	53	6	10	30	1.60
5980341--5980530	92	2.1	92	85	2	256	31	15	14	38	1.87
5986954--5987034	18	4.4	18	71	18	60	61	3	4	29	1.34
5987133--5987165	15	2.3	15	94	5	59	63	0	0	36	0.95
5988667--5988738	11	6.1	11	77	19	65	44	2	2	50	1.31
5995331--5995435	48	2.2	48	89	0	165	40	19	20	20	1.91
5999797--5999852	13	4.4	12	82	10	58	64	0	19	16	1.29
6015874--6015946	26	2.9	26	83	4	87	20	20	20	38	1.94
6028876--6028916	20	2.0	20	100	0	82	31	24	4	39	1.76
6032389--6032518	27	4.8	27	84	7	138	30	29	10	30	1.90
6040913--6040939	3	9.0	3	100	0	54	33	33	0	33	1.58
6045258--6045291	17	1.9	18	94	5	61	32	38	29	0	1.58
6047736--6047858	60	2.1	60	96	1	230	53	3	8	34	1.48
6065459--6066135	339	2.0	339	98	0	1318	36	14	18	29	1.91
6071620--6071726	25	4.3	25	84	2	108	35	19	21	23	1.96
6071786--6071876	45	2.0	45	89	0	137	26	23	18	31	1.97
6072609--6073307	316	2.2	316	98	0	1344	38	16	6	38	1.75
6076282--6076316	18	1.9	18	94	0	61	25	8	28	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6079286--6079332	18	2.6	18	96	0	85	57	4	0	38	1.18
6083344--6083399	28	2.0	28	96	0	103	21	19	17	41	1.91
6085819--6085916	27	3.5	28	90	2	135	26	13	28	31	1.94
6085847--6085929	27	3.0	27	87	5	96	30	12	25	32	1.92
6085819--6085930	28	4.0	27	83	6	98	28	12	25	33	1.92
6090971--6091026	25	2.2	25	76	14	62	39	1	1	57	1.20
6100751--6100790	20	2.0	20	85	9	55	35	10	12	42	1.76
6106717--6106792	21	3.7	21	87	7	120	36	11	10	40	1.76
6106730--6106793	19	3.3	19	93	4	101	37	14	9	39	1.78
6126099--6126147	24	2.0	24	100	0	98	32	8	32	26	1.86
6126570--6126606	15	2.5	16	87	12	53	32	16	5	45	1.70
6130961--6130986	13	2.0	13	100	0	52	30	23	15	30	1.95
6132588--6132625	13	3.0	13	92	3	60	10	55	34	0	1.34
6132860--6132892	14	2.4	14	94	0	57	24	57	3	15	1.52
6134608--6134943	102	3.3	102	99	0	663	38	14	12	33	1.84
6135336--6135402	19	3.7	18	73	13	66	11	5	4	77	1.09
6144783--6144827	17	2.6	17	78	21	58	55	6	2	35	1.38
6145052--6145111	30	2.0	31	83	9	79	41	1	36	20	1.62
6145325--6145361	9	4.1	9	92	0	65	29	10	13	45	1.77
6148298--6148437	42	3.3	42	81	5	147	30	27	17	25	1.97
6150658--6150694	15	2.7	13	84	15	56	40	0	0	59	0.97
6150661--6150692	15	2.1	15	100	0	64	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6152688--6152785	48	2.0	48	92	0	160	35	8	25	30	1.85
6153367--6153500	54	2.5	54	90	2	198	27	31	24	16	1.96
6155942--6155987	21	2.3	20	79	13	51	6	32	2	58	1.36
6169145--6169329	79	2.3	81	82	10	222	24	27	22	25	2.00
6169145--6169329	40	4.6	41	79	14	208	24	27	22	25	2.00
6175219--6175294	28	2.8	28	80	13	95	35	5	7	51	1.54
6178137--6178250	41	2.8	41	91	2	185	23	20	22	33	1.97
6189357--6189448	34	2.7	35	79	5	107	19	22	22	34	1.96
6189298--6189534	75	3.2	75	72	11	238	24	22	21	32	1.98
6194879--6194911	17	1.9	17	88	11	50	0	18	12	69	1.18
6196830--6197077	50	4.9	50	79	5	232	23	27	20	28	1.99
6204364--6204394	11	2.8	11	100	0	62	74	9	16	0	1.07
6204514--6205406	37	24.1	37	99	0	1759	32	24	13	29	1.93
6207547--6207646	49	2.0	49	98	0	191	50	6	1	43	1.33
6210720--6210753	17	2.1	16	89	10	52	2	14	0	82	0.79
6212053--6212157	40	2.6	40	83	3	129	29	15	21	33	1.94
6212053--6212171	41	2.9	41	77	5	125	29	15	21	33	1.94
6218223--6218249	11	2.5	11	100	0	54	59	0	0	40	0.98
6218623--6218688	22	3.0	22	76	12	73	42	1	1	54	1.18
6219733--6219776	23	1.9	23	85	0	61	43	2	6	47	1.42
6222606--6222742	58	2.4	57	83	2	175	53	3	0	42	1.24
6223867--6223958	30	3.0	30	80	17	116	57	0	2	40	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6223867--6223990	10	12.1	10	71	14	67	57	0	3	39	1.15
6223867--6223959	31	3.0	30	84	13	109	58	0	2	39	1.10
6223866--6223992	41	3.1	42	78	12	129	56	0	3	40	1.15
6232400--6232441	20	2.1	20	95	0	75	52	0	11	35	1.38
6233521--6233581	30	2.0	31	87	3	88	37	0	42	19	1.52
6233630--6233666	9	4.1	9	89	0	56	32	10	10	45	1.74
6240631--6240677	5	9.6	5	77	13	53	78	2	0	19	0.85
6240629--6240679	14	3.6	14	81	5	66	78	1	0	19	0.85
6250255--6250292	20	1.9	20	88	0	58	18	18	10	52	1.73
6267574--6267628	27	2.0	27	86	6	76	60	14	16	9	1.59
6271997--6272050	24	2.2	26	83	12	69	12	9	11	66	1.44
6273222--6273259	19	2.0	19	89	0	58	34	28	7	28	1.85
6273819--6273880	29	2.1	31	87	6	92	33	1	46	17	1.58
6286800--6287061	88	3.0	88	99	0	515	35	5	16	42	1.72
6289098--6289646	276	2.0	277	85	0	749	34	21	12	31	1.90
6295560--6295596	18	2.2	18	85	9	51	5	24	0	70	1.08
6295555--6295609	28	2.0	28	85	0	74	10	27	0	61	1.29
6295628--6295686	21	2.7	21	76	7	64	8	25	0	66	1.20
6295722--6295784	30	2.0	31	85	11	85	12	19	1	66	1.32
6302308--6302375	35	2.0	36	82	8	88	51	13	10	25	1.72
6306799--6306897	48	2.1	48	94	0	171	31	22	17	29	1.96
6307253--6307380	22	5.9	22	73	0	87	29	23	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6309683--6309747	34	1.9	34	90	0	103	56	3	3	36	1.30
6317270--6317308	3	13.0	3	100	0	78	0	33	0	66	0.92
6322282--6322350	36	1.9	36	96	0	129	42	17	5	34	1.73
6327459--6327490	12	2.8	12	95	4	57	62	0	6	31	1.20
6339991--6340072	27	3.0	27	77	7	83	62	4	8	24	1.44
6341839--6341902	31	2.1	31	91	5	103	70	0	26	3	1.02
6341846--6341898	16	3.5	15	78	12	63	67	0	30	1	1.01
6345209--6345269	28	2.1	29	81	6	70	55	8	1	34	1.39
6348461--6348485	9	2.8	9	100	0	50	80	0	0	20	0.72
6348684--6348763	40	2.0	40	92	0	133	40	11	16	32	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185