genome.fa.s5.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  111  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34799178--34799223	18	2.6	18	82	3	58	45	32	0	21	1.52
34799442--34799484	16	2.6	16	81	3	50	13	32	32	20	1.92
34812973--34813096	63	2.0	63	87	7	180	50	1	8	39	1.44
34814718--34814805	45	2.0	45	83	0	113	27	21	17	34	1.95
34814794--34814869	40	1.9	40	97	0	143	25	26	14	34	1.94
34815172--34815672	132	3.8	132	89	1	747	24	23	21	29	1.99
34822392--34822475	42	2.0	44	83	9	111	51	0	10	38	1.37
34822439--34822521	26	3.0	26	67	16	67	54	1	8	36	1.39
34822838--34822875	17	2.2	17	100	0	76	44	10	15	28	1.80
34824128--34824153	9	2.9	9	100	0	52	7	23	34	34	1.83
34824328--34824395	24	2.8	24	81	0	73	32	26	27	13	1.93
34826865--34826914	25	2.0	25	92	0	82	18	34	4	44	1.68
34832115--34832208	24	3.8	25	77	1	84	35	20	25	19	1.96
34834015--34834063	18	2.7	17	78	12	53	34	20	4	40	1.71
34835002--34835038	17	2.1	18	90	5	58	13	37	27	21	1.91
34844683--34844799	48	2.5	46	90	2	171	29	14	21	35	1.93
34847205--34847249	23	2.0	23	86	4	65	13	0	4	82	0.82
34855814--34855860	23	2.0	23	91	0	76	21	17	23	38	1.93
34862598--34862720	54	2.3	54	78	2	131	28	25	23	22	1.99
34864686--34864739	7	7.7	7	95	0	90	31	0	0	68	0.90
34867223--34867268	21	2.2	21	96	0	83	34	0	23	41	1.55
34867230--34867275	21	2.1	21	88	4	65	32	6	26	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34872927--34873203	92	3.0	92	97	1	511	41	25	3	28	1.73
34874716--34874744	8	3.6	8	100	0	58	24	0	0	75	0.80
34877955--34878044	45	2.0	45	97	0	171	16	22	27	33	1.95
34878187--34878233	19	2.5	19	79	10	60	63	0	0	36	0.94
34880739--34881051	159	2.0	159	90	0	500	39	19	16	23	1.92
34882412--34882464	22	2.4	22	90	0	88	37	28	1	32	1.68
34882447--34882506	29	2.1	29	100	0	120	31	40	6	21	1.79
34887299--34887336	19	2.0	19	89	0	58	28	23	10	36	1.88
34889015--34889057	17	2.5	17	78	10	52	4	25	0	69	1.07
34892955--34893007	16	3.3	16	80	12	56	62	0	0	37	0.96
34892957--34893009	25	2.1	25	86	6	72	62	0	0	37	0.96
34893171--34893209	17	2.4	17	82	4	53	38	2	2	56	1.27
34893279--34893337	22	2.7	22	86	0	73	10	1	40	47	1.47
34893774--34893856	31	2.6	30	75	9	85	50	10	12	26	1.72
34895403--34895523	61	2.0	61	93	0	206	40	6	2	50	1.42
34896702--34896728	14	1.9	14	100	0	54	48	0	0	51	1.00
34899575--34899632	30	2.0	30	86	3	82	20	24	0	55	1.44
34905366--34905459	39	2.4	39	75	3	100	58	5	3	32	1.36
34905482--34905525	17	2.6	17	85	3	63	47	0	11	40	1.39
34905646--34905696	3	17.0	3	87	0	66	64	5	1	27	1.27
34905646--34905693	18	2.7	18	90	0	78	64	6	2	27	1.28
34905646--34905697	21	2.5	21	93	0	86	63	7	1	26	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34905720--34905749	7	4.4	7	91	8	53	73	0	0	26	0.84
34906310--34906341	3	10.7	3	100	0	64	31	0	0	68	0.90
34921916--34922209	74	4.0	74	100	0	588	28	29	16	25	1.97
34922199--34922310	56	2.0	56	96	0	206	37	21	14	26	1.92
34925580--34925667	23	3.7	23	74	17	56	34	3	5	56	1.39
34925822--34925893	29	2.4	30	80	11	85	30	5	5	58	1.44
34926777--34926818	22	1.9	23	85	9	61	4	19	7	69	1.31
34927391--34927442	8	6.5	8	73	8	52	32	0	1	65	1.04
34927397--34927442	15	3.1	15	87	6	58	32	0	2	65	1.05
34931694--34931751	18	3.3	17	88	9	73	82	15	1	0	0.74
34931694--34931740	6	7.7	6	95	4	85	85	14	0	0	0.61
34932223--34932263	18	2.3	18	91	0	64	75	0	12	12	1.05
34932244--34932292	21	2.3	22	89	10	75	73	0	14	12	1.10
34932252--34932276	13	1.9	13	100	0	50	80	0	12	8	0.92
34932244--34932284	8	5.7	7	88	11	57	75	0	14	9	1.04
34933614--34933783	88	1.9	88	89	2	261	28	20	25	25	1.99
34934049--34934406	50	7.2	50	65	8	176	29	19	23	26	1.98
34933987--34934489	100	5.1	100	81	5	540	29	20	24	26	1.99
34934167--34934413	50	4.9	50	68	2	183	31	21	21	25	1.98
34939614--34939638	4	6.2	4	100	0	50	24	0	0	76	0.80
34943140--34943166	14	1.9	14	100	0	54	22	0	22	55	1.44
34949156--34949194	7	5.4	7	87	6	60	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34955759--34955828	29	2.3	29	85	11	88	24	5	11	58	1.54
34955860--34955902	17	2.5	17	76	3	50	62	0	0	37	0.95
34960051--34960107	26	2.2	26	84	6	71	63	0	5	31	1.17
34960061--34960113	27	2.0	27	89	10	83	64	0	1	33	1.05
34960060--34960108	12	3.8	13	82	15	66	63	0	4	32	1.13
34964709--34964769	3	21.3	3	83	9	83	62	0	37	0	0.96
34964700--34964767	14	4.5	14	92	7	91	60	0	39	0	0.97
34964705--34964775	6	11.3	6	78	14	54	61	0	38	0	0.96
34964932--34965019	41	2.2	38	84	6	104	34	0	12	53	1.39
34964932--34965026	19	4.8	19	79	8	91	33	0	11	54	1.36
34964961--34965226	49	5.4	47	73	15	177	32	0	12	53	1.44
34965063--34965226	19	9.1	19	65	28	72	32	1	13	53	1.48
34965072--34965226	27	6.1	26	80	14	182	33	1	12	52	1.48
34965072--34965226	76	2.0	75	83	11	192	33	1	12	52	1.48
34965422--34965503	38	2.2	38	97	0	155	54	3	2	39	1.31
34965540--34965581	16	2.7	15	85	7	57	38	2	2	57	1.25
34967200--34967252	6	8.8	6	89	0	79	35	30	33	0	1.58
34970580--34970634	22	2.8	19	80	17	67	3	29	1	65	1.20
34970587--34970628	22	1.9	22	100	0	84	4	30	2	61	1.29
34970689--34970764	27	2.8	27	93	0	125	22	36	22	18	1.95
34978303--34978375	19	3.8	19	92	0	128	38	9	15	36	1.80
34978303--34978401	19	4.9	21	86	6	93	37	8	16	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34981264--34981309	24	1.9	24	86	0	65	45	13	26	15	1.82
34983512--34983550	9	4.1	9	90	9	60	87	12	0	0	0.55
34983514--34983550	10	3.7	10	92	7	58	89	10	0	0	0.49
34983512--34983550	14	2.7	15	84	11	55	87	12	0	0	0.55
34985229--34986270	132	7.9	132	92	0	1685	28	18	23	29	1.97
34985444--34985625	44	4.1	44	63	18	117	29	18	23	29	1.97
34985871--34986050	44	4.1	43	65	9	103	27	20	25	26	1.99
34986583--34986693	19	5.8	19	89	0	177	39	9	13	37	1.76
34986590--34986693	38	2.7	38	98	0	199	40	8	12	38	1.74
34986685--34986729	23	2.0	23	83	8	58	33	4	17	44	1.69
34988854--34988925	35	2.1	35	86	5	101	54	2	0	43	1.15
34988873--34988940	34	2.1	34	81	10	79	55	5	0	38	1.24
34993970--34994000	15	2.0	16	93	6	55	70	0	0	29	0.87
34994522--34994546	4	6.2	4	100	0	50	52	24	0	24	1.48
34998860--34998971	9	12.4	9	88	0	161	38	25	12	23	1.90
34998860--34998971	27	4.1	27	94	0	179	38	25	12	23	1.90
34998995--34999052	18	3.0	20	80	12	57	24	3	10	62	1.43
35009257--35009562	101	3.0	101	84	1	398	30	15	24	29	1.96
35009556--35009606	24	2.1	24	92	0	84	49	3	23	23	1.67
35016455--35016500	19	2.4	18	82	10	56	26	23	10	39	1.88
35025032--35025455	44	9.2	44	69	18	150	33	18	20	27	1.96
35025078--35025259	98	1.9	97	81	6	224	33	19	18	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35025034--35025411	142	2.7	142	92	0	630	34	18	19	27	1.95
35025179--35025587	186	2.2	186	90	1	649	34	19	18	27	1.95
35025507--35025590	44	1.9	44	90	0	132	34	22	17	25	1.96
35025377--35025647	142	1.9	142	88	1	409	33	18	19	28	1.95
35025724--35025906	50	3.7	50	86	2	242	35	21	16	26	1.95
35030472--35030535	24	2.7	25	77	15	73	17	23	23	35	1.95
35030472--35030544	24	3.1	23	75	14	69	16	23	21	38	1.93
35041663--35041708	18	2.6	18	78	0	56	65	4	2	28	1.23
35056389--35056524	40	3.4	39	77	5	114	40	22	19	17	1.91
35056547--35056700	41	3.8	41	88	6	233	22	22	24	30	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185