genome.fa.s5.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  36  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10645220--10645506	145	2.0	143	85	6	393	40	4	9	45	1.59
10645238--10645538	145	2.1	144	84	9	371	39	4	9	46	1.57
10649932--10649971	20	2.0	20	90	9	64	35	17	10	37	1.83
10651087--10651192	53	2.0	53	98	0	203	30	14	15	40	1.86
10653542--10653583	13	3.5	13	75	18	54	50	11	0	38	1.40
10653542--10653586	23	2.0	23	100	0	90	48	11	0	40	1.39
10656847--10656880	17	2.0	17	94	0	59	58	8	11	20	1.59
10657351--10657387	18	2.1	18	89	0	56	24	27	5	43	1.76
10659704--10659747	21	2.1	21	100	0	88	36	34	13	15	1.87
10664694--10664815	23	5.3	23	82	3	165	22	20	26	31	1.98
10664694--10664815	46	2.7	46	92	0	190	22	20	26	31	1.98
10664911--10664957	23	2.0	22	84	15	60	40	0	23	36	1.55
10680628--10680761	49	2.7	49	84	0	160	41	18	14	25	1.89
10681044--10681126	31	2.7	31	86	0	112	34	19	18	27	1.95
10683056--10683169	57	2.0	57	98	0	219	28	20	18	33	1.96
10686594--10686639	5	9.6	5	84	11	53	0	13	0	86	0.56
10686594--10686639	14	3.2	13	82	17	56	0	13	0	86	0.56
10686594--10686642	10	5.0	10	85	9	66	0	12	0	87	0.54
10687554--10687601	26	1.9	26	87	8	73	45	10	2	41	1.50
10693958--10693983	6	4.3	6	100	0	52	19	34	15	30	1.93
10698781--10699189	40	10.2	41	85	3	370	36	17	26	19	1.94
10698793--10699189	80	5.0	80	83	0	427	36	17	26	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10698793--10699189	120	3.3	118	81	1	461	36	17	26	19	1.94
10699044--10699105	20	3.1	20	72	9	72	32	20	32	14	1.93
10699041--10699186	20	7.3	20	62	9	55	36	17	27	18	1.94
10700951--10701026	28	2.7	28	93	0	134	28	19	15	35	1.93
10704307--10704362	19	3.0	18	81	5	67	16	28	26	28	1.97
10706855--10706887	15	2.3	15	89	5	50	24	27	21	27	1.99
10715864--10715896	16	2.1	16	94	0	57	39	0	3	57	1.14
10716165--10716205	21	2.0	21	85	0	55	36	7	0	56	1.27
10717542--10717581	19	2.0	20	85	4	55	22	20	10	47	1.79
10720383--10720421	17	2.3	17	100	0	78	30	20	33	15	1.94
10721757--10721974	44	5.0	43	76	5	220	29	16	25	28	1.97
10721669--10721945	44	6.2	44	73	8	191	29	18	23	28	1.98
10721692--10722277	88	6.7	88	72	10	367	29	17	25	26	1.97
10722163--10722277	44	2.6	44	80	4	133	30	14	27	26	1.95
10723759--10723791	16	2.1	16	94	0	57	39	0	3	57	1.14
10724060--10724100	21	2.0	21	85	0	55	36	7	0	56	1.27
10739320--10739372	23	2.3	23	93	0	88	41	18	9	30	1.82
10742756--10742792	18	2.1	18	89	0	56	21	24	0	54	1.45
10743315--10743388	37	2.0	37	94	0	130	29	10	27	32	1.90
10744532--10744605	11	7.2	11	73	21	63	60	1	0	37	1.05
10744570--10744613	13	3.8	13	72	27	53	68	0	0	31	0.90
10744534--10744664	24	5.5	24	70	19	87	57	2	2	38	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10744574--10744615	21	2.0	21	100	0	84	66	0	0	33	0.92
10744515--10744668	57	2.7	57	81	10	154	58	1	3	35	1.28
10744691--10744729	7	5.6	7	100	0	78	43	0	0	56	0.99
10745783--10745811	14	2.1	14	100	0	58	34	0	13	51	1.42
10745799--10745857	19	3.1	19	87	4	91	38	1	6	52	1.38
10745785--10745852	14	3.9	16	72	26	50	38	1	8	51	1.42
10745910--10745950	21	2.0	21	85	0	55	36	12	9	41	1.76
10745958--10745997	21	1.9	21	84	0	53	30	10	2	57	1.45
10746575--10746599	11	2.3	11	100	0	50	64	8	0	28	1.22
10747022--10747167	40	3.7	40	89	0	204	32	21	21	24	1.98
10747216--10747320	40	2.7	37	71	12	93	31	19	23	25	1.98
10747062--10747690	154	4.1	154	78	4	588	31	18	22	27	1.97
10747810--10747853	14	3.1	15	81	12	58	15	0	29	54	1.42
10748024--10748217	7	27.6	7	73	9	108	19	2	35	42	1.65
10748030--10748068	20	1.9	21	89	5	62	20	0	33	46	1.51
10748020--10748087	27	2.5	28	86	9	88	22	0	30	47	1.52
10748119--10748186	22	3.1	22	72	6	66	19	2	35	42	1.66
10748163--10748211	15	3.3	15	77	5	55	14	6	44	34	1.70
10748157--10748217	30	2.1	29	84	9	79	16	4	40	37	1.70
10748464--10748540	40	1.9	40	83	0	100	36	15	32	15	1.89
10750427--10750461	9	3.9	9	92	0	61	42	20	0	37	1.52
10750516--10750654	9	15.8	9	76	11	101	46	19	0	33	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10750489--10750654	18	9.3	18	69	15	103	45	18	0	35	1.54
10750526--10750658	43	3.0	43	82	8	162	47	18	0	33	1.49
10753224--10753392	43	3.9	43	82	3	178	26	13	27	32	1.94
10760024--10760071	10	4.7	10	89	2	60	83	0	8	8	0.82
10760023--10760071	11	4.6	11	87	10	57	83	0	8	8	0.81
10761069--10761278	83	2.6	83	80	6	232	29	11	11	46	1.76
10761233--10761344	59	1.9	59	83	3	145	26	9	13	50	1.73
10764676--10764725	20	2.5	20	90	0	73	34	4	6	56	1.43
10765555--10765598	24	1.9	24	90	9	74	36	0	2	61	1.09
10769109--10769170	23	2.8	22	78	4	70	53	1	0	45	1.10
10770008--10770051	23	1.9	23	86	9	63	54	0	0	45	0.99
10790020--10790540	45	11.7	44	70	16	189	29	20	22	26	1.99
10790211--10790492	95	3.0	95	90	2	421	29	20	23	25	1.99
10790237--10790531	90	3.2	90	92	2	473	29	21	23	25	1.99
10790508--10790675	67	2.5	67	94	0	284	30	22	23	23	1.99
10792229--10792257	13	2.2	13	100	0	58	20	6	6	65	1.40
10792569--10792763	98	2.0	98	89	0	300	27	10	24	36	1.89
10799714--10799925	29	7.3	29	83	2	230	38	16	25	19	1.92
10799714--10799925	58	3.6	58	83	3	257	38	16	25	19	1.92
10799714--10799926	88	2.4	87	86	2	275	38	16	25	19	1.92
10805315--10805351	15	2.5	15	100	0	74	32	13	24	29	1.93
10809611--10809861	125	2.0	127	88	3	373	31	16	20	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10810583--10810639	29	2.0	29	96	0	105	49	8	7	35	1.61
10811737--10811795	30	1.9	30	86	10	84	55	1	3	38	1.26
10813539--10813580	21	2.0	21	85	0	57	2	21	45	30	1.65
10822892--10822916	11	2.3	11	100	0	50	68	0	0	32	0.90
10823150--10823209	30	2.0	30	83	3	77	58	8	6	26	1.52
10826888--10826928	21	1.9	21	85	5	55	65	0	0	34	0.93
10832289--10832575	70	4.1	70	84	1	380	22	20	27	28	1.99
10832306--10833040	71	10.4	69	79	7	278	24	20	24	31	1.98
10832715--10833041	143	2.3	139	84	4	397	24	19	22	33	1.97
10832644--10833041	214	1.9	213	83	1	528	25	19	22	32	1.97
10840193--10840230	18	2.2	17	86	13	51	31	7	2	57	1.41
10850099--10850291	50	3.7	50	79	4	161	24	27	21	26	1.99
10857226--10857414	50	3.8	48	77	5	191	21	26	22	29	1.99
10861860--10861905	21	2.3	20	78	14	51	45	17	6	30	1.73
10863264--10863341	30	2.6	30	95	0	138	15	14	33	37	1.87
10863334--10863425	29	3.2	29	84	1	114	20	16	22	40	1.91
10869567--10869639	37	2.0	37	81	2	85	53	20	8	17	1.69
10874469--10874515	21	2.2	21	84	3	58	23	14	25	36	1.93
10879722--10879899	27	6.6	27	83	3	205	26	15	28	29	1.96
10879723--10879878	82	1.9	81	88	3	233	26	15	28	29	1.96
10879719--10879899	82	2.2	81	83	2	229	27	15	27	29	1.96
10882811--10882928	30	3.9	30	90	0	173	27	23	26	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10883066--10883162	26	3.7	26	73	0	86	34	23	23	18	1.96
10883357--10883522	27	6.2	27	81	4	149	21	14	19	44	1.86
10883352--10883522	54	3.2	54	87	3	238	20	15	20	43	1.87
10883359--10883521	53	3.1	53	89	2	229	20	14	20	44	1.87
10888398--10888458	30	2.0	30	100	0	122	19	16	16	47	1.83
10889583--10889646	27	2.4	27	87	10	89	37	23	23	15	1.93
10889806--10889903	27	3.6	27	77	0	106	27	13	18	40	1.88
10889779--10889891	54	2.1	54	84	0	145	30	14	18	37	1.90
10892892--10893069	27	6.6	27	84	3	205	29	28	15	26	1.96
10892913--10893068	82	1.9	81	88	3	233	29	28	15	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185