genome.fa.s5.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  15  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4117426--4117622	39	5.1	40	81	8	167	29	3	21	45	1.67
4117426--4117622	78	2.5	79	79	4	222	29	3	21	45	1.67
4119792--4119818	3	9.0	3	100	0	54	66	0	0	33	0.92
4121042--4121080	18	2.2	18	90	9	62	51	2	5	41	1.38
4121048--4121096	19	2.6	18	84	12	55	53	2	4	40	1.32
4122770--4122799	2	15.0	2	100	0	60	50	0	50	0	1.00
4125935--4126108	93	1.9	93	91	2	287	27	18	25	29	1.98
4142597--4142655	28	2.1	28	90	0	91	27	18	25	28	1.98
4142606--4142673	28	2.4	28	82	4	84	25	19	26	29	1.98
4142840--4142870	15	2.1	15	100	0	62	38	6	32	22	1.80
4144750--4144790	21	2.0	21	85	0	55	73	2	19	4	1.13
4147643--4147675	16	2.1	16	100	0	66	75	0	0	24	0.80
4147702--4147800	36	2.8	36	83	9	105	63	6	0	30	1.18
4150910--4150943	16	2.1	16	100	0	68	44	5	0	50	1.26
4151131--4151169	19	2.1	19	90	9	62	61	0	5	33	1.18
4153765--4153850	3	28.7	3	100	0	172	67	0	32	0	0.91
4157086--4157123	19	2.2	18	86	13	53	50	5	7	36	1.54
4160249--4160305	27	2.1	27	83	0	69	19	29	15	35	1.93
4163800--4163830	16	1.9	16	93	0	53	70	0	0	29	0.87
4163920--4163977	22	2.6	22	76	10	64	65	3	5	25	1.29
4164250--4166241	994	2.0	994	100	0	3984	34	12	18	34	1.88
4167260--4167294	18	1.9	18	88	0	52	37	0	2	60	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4167350--4167380	16	1.9	16	100	0	62	58	0	0	41	0.98
4170642--4170674	15	2.3	14	94	5	57	72	0	18	9	1.10
4170642--4170680	15	2.5	16	88	12	55	74	0	17	7	1.05
4176256--4176708	89	5.1	89	81	2	493	28	23	15	31	1.96
4176402--4176708	44	6.9	44	74	2	265	29	22	15	31	1.95
4176257--4176708	177	2.5	176	86	2	602	28	23	15	31	1.96
4176435--4176804	177	2.1	177	78	5	381	28	24	16	30	1.96
4176814--4176994	44	4.1	44	64	11	118	24	24	21	28	1.99
4176726--4177991	132	9.6	132	91	2	1797	27	24	19	28	1.99
4177191--4177378	44	4.3	44	69	10	150	26	26	18	28	1.98
4176726--4177991	397	3.2	395	90	1	1890	27	24	19	28	1.99
4177721--4177922	44	4.6	44	68	9	115	28	25	18	27	1.98
4177959--4178045	45	1.9	45	80	0	102	21	25	21	31	1.98
4176726--4178030	530	2.5	529	92	0	2130	27	24	19	28	1.99
4179315--4179349	7	5.0	7	86	13	54	14	17	0	68	1.21
4180263--4180302	19	2.2	17	83	12	53	62	2	20	15	1.43
4180264--4180302	18	2.1	18	90	4	60	64	2	17	15	1.41
4182195--4182240	19	2.4	19	85	7	58	47	8	19	23	1.77
4183054--4183083	13	2.2	13	94	5	51	60	13	13	13	1.60
4183054--4183083	7	4.4	7	91	8	53	60	13	13	13	1.60
4184343--4184397	20	2.7	21	75	8	60	61	7	3	27	1.39
4188512--4188651	24	5.7	25	66	18	71	32	22	26	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4189912--4189941	16	1.9	15	93	6	51	66	6	16	10	1.41
4190549--4190731	47	3.9	47	88	1	260	50	7	13	27	1.69
4192040--4192079	18	2.2	18	100	0	80	22	10	5	62	1.46
4192727--4192798	32	2.2	32	82	4	92	18	20	33	27	1.96
4200580--4200653	32	2.3	32	78	2	85	60	0	1	37	1.05
4200644--4200733	11	8.2	11	73	21	73	61	0	3	35	1.13
4200621--4200733	52	2.2	52	90	3	174	59	0	2	38	1.12
4200606--4200742	41	3.3	42	81	14	144	62	0	2	35	1.11
4200676--4200709	17	2.0	17	94	0	59	67	0	0	32	0.91
4202686--4202802	62	1.9	61	86	5	166	49	4	4	41	1.42
4207782--4207823	21	1.9	21	85	9	57	45	0	4	50	1.23
4210142--4210525	126	3.1	125	92	2	601	31	13	22	32	1.93
4212699--4212731	15	2.3	15	89	5	50	66	6	0	27	1.15
4212830--4212888	30	2.0	29	90	6	93	57	1	0	40	1.09
4212922--4212972	22	2.3	21	83	9	66	33	0	33	33	1.58
4212925--4213024	52	1.9	52	91	0	164	38	0	32	30	1.58
4212977--4213032	22	2.5	22	97	2	103	41	0	30	28	1.57
4214860--4214923	13	4.9	13	75	11	51	39	6	15	39	1.73
4215055--4215137	44	1.9	44	81	16	102	46	1	2	49	1.22
4216608--4216649	21	2.0	21	95	0	75	19	35	4	40	1.72
4216867--4216896	15	2.0	15	93	0	51	23	16	20	40	1.91
4217182--4217208	13	2.1	13	100	0	54	48	0	29	22	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4219740--4219788	20	2.5	20	86	0	71	51	0	4	44	1.20
4219876--4219915	20	2.0	20	95	0	71	45	7	10	37	1.66
4220020--4220056	18	2.0	20	89	10	60	43	8	10	37	1.69
4220301--4220353	14	3.7	14	76	14	54	60	0	1	37	1.08
4226901--4227149	50	4.8	50	85	3	300	20	29	23	26	1.99
4226900--4227149	100	2.4	104	88	5	355	21	29	23	26	1.99
4227244--4227275	13	2.5	13	94	0	55	56	12	0	31	1.37
4234842--4234882	8	5.1	8	90	0	55	24	9	24	41	1.85
4234842--4234882	12	3.4	12	86	0	55	24	9	24	41	1.85
4242086--4242301	107	2.0	108	97	0	407	33	11	19	35	1.88
4256704--4256801	23	4.3	23	90	2	162	31	26	21	20	1.98
4256711--4256799	45	2.0	45	95	0	160	31	26	22	19	1.97
4264077--4264174	23	4.3	23	90	2	162	31	26	21	20	1.98
4264084--4264172	45	2.0	45	95	0	160	31	26	22	19	1.97
4265987--4266013	14	1.9	14	100	0	54	29	7	55	7	1.55
4266300--4266325	3	8.7	3	100	0	52	30	0	0	69	0.89
4271328--4271356	15	1.9	15	100	0	58	55	0	20	24	1.44
4274074--4274151	39	2.0	39	100	0	156	25	20	20	33	1.97
4275750--4275784	17	2.1	17	100	0	70	54	5	17	22	1.64
4280062--4280176	50	2.3	50	86	3	151	40	19	16	24	1.91
4281814--4281858	18	2.4	18	85	7	63	48	0	6	44	1.29
4292771--4292806	11	3.2	11	92	4	54	66	0	2	30	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4292939--4293018	38	2.1	37	90	2	124	22	61	5	10	1.47
4297487--4297581	17	5.5	17	68	5	57	38	7	13	40	1.73
4299257--4299325	30	2.3	30	89	0	111	39	4	10	46	1.58
4303021--4303197	50	3.5	50	89	0	264	36	15	21	26	1.93
4303173--4303282	31	3.5	31	92	0	175	30	19	25	25	1.98
4303312--4303441	49	2.7	47	88	5	181	28	14	26	30	1.95
4304790--4304823	17	2.0	17	100	0	68	29	41	17	11	1.85
4325784--4325955	40	4.3	40	88	2	222	25	27	21	25	1.99
4325786--4326008	40	5.6	39	83	5	216	25	27	21	25	1.99
4325784--4326008	80	2.8	79	80	7	240	25	27	21	25	1.99
4325940--4326017	40	1.9	41	82	10	97	26	28	20	24	1.99
4336224--4336605	196	1.9	196	85	1	523	35	28	13	22	1.92
4338403--4338445	10	4.4	10	79	2	52	48	20	2	27	1.62
4346379--4346428	18	2.8	17	85	8	73	52	2	0	46	1.12
4346968--4347005	20	1.9	20	89	10	60	50	0	13	36	1.42
4350046--4350204	27	5.9	27	82	11	184	34	22	24	18	1.96
4350064--4350207	54	2.7	54	94	2	245	34	23	24	17	1.96
4351799--4351906	26	4.2	26	95	0	198	35	26	7	30	1.84
4355650--4355827	47	3.8	46	83	8	209	31	26	20	21	1.98
4355650--4355827	94	1.9	92	84	6	234	31	26	20	21	1.98
4360159--4360249	39	2.3	39	88	0	128	31	4	17	46	1.68
4364534--4364660	28	4.5	28	86	0	155	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4364553--4364698	56	2.6	57	80	6	156	32	20	22	24	1.98
4364534--4364687	84	1.8	84	80	5	186	31	19	22	26	1.98
4367123--4367191	33	2.1	33	94	0	120	27	10	4	57	1.50
4374981--4375095	30	3.9	30	81	5	128	29	23	3	43	1.70
4374981--4375096	29	3.9	30	80	5	130	29	23	3	43	1.70
4374978--4375109	29	4.5	29	72	12	90	32	21	3	43	1.68
4374978--4375103	59	2.1	59	79	5	148	32	21	3	42	1.69
4375601--4375644	15	3.0	14	83	6	52	75	11	13	0	1.06
4375624--4375679	24	2.3	25	93	6	105	66	8	25	0	1.21
4376266--4376332	17	3.9	17	79	11	82	31	17	10	40	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185