genome.fa.s5.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  106  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33388515--33388548	17	2.0	17	94	0	59	52	29	14	2	1.56
33394716--33394774	26	2.3	26	85	5	75	40	11	13	33	1.81
33397844--33398244	133	3.0	133	97	0	739	27	6	15	50	1.70
33406052--33406108	20	2.9	19	80	14	62	49	0	0	50	1.00
33406809--33406878	19	3.6	19	80	16	72	52	4	0	42	1.20
33406808--33406878	20	3.6	20	81	7	83	53	4	0	42	1.20
33406825--33406906	28	3.0	28	72	16	82	51	2	0	46	1.14
33406798--33406883	19	4.5	19	76	13	63	51	5	0	43	1.26
33406825--33406899	26	2.8	26	78	11	80	50	1	0	48	1.09
33411723--33411798	28	2.8	28	87	2	109	27	23	14	34	1.94
33413358--33413537	100	1.8	100	87	2	272	45	15	9	30	1.78
33413526--33413986	67	7.0	67	66	15	228	37	13	14	33	1.86
33413426--33413987	131	4.3	131	81	3	605	39	14	13	32	1.85
33414069--33414114	23	2.0	23	91	0	74	28	28	19	23	1.98
33415725--33415789	32	2.1	32	97	2	123	47	12	9	30	1.72
33429232--33429280	25	2.0	25	91	0	80	36	14	16	32	1.89
33431007--33431039	17	1.9	18	88	11	52	45	6	15	33	1.70
33432282--33432401	60	2.0	60	91	3	197	26	26	29	17	1.98
33444315--33444354	19	2.1	19	85	4	53	32	5	15	47	1.66
33448592--33448657	24	2.8	24	90	0	96	40	4	6	48	1.48
33451705--33451762	25	2.3	25	85	5	73	58	1	6	32	1.35
33451889--33451936	17	2.7	17	87	6	69	27	0	0	72	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33451887--33451929	9	4.7	9	94	2	68	25	0	0	74	0.82
33452270--33452313	14	3.3	13	87	12	63	75	0	25	0	0.81
33452270--33452310	21	2.0	21	90	9	66	73	0	26	0	0.84
33452562--33452600	20	1.9	21	89	5	62	51	0	0	48	1.00
33460429--33460467	18	2.1	19	85	4	53	15	0	10	74	1.07
33463285--33463662	27	14.0	27	83	0	441	42	19	20	17	1.89
33463298--33463658	108	3.3	108	100	0	722	42	19	20	16	1.89
33463824--33463906	26	3.2	26	85	1	94	19	25	19	36	1.95
33466254--33466282	6	4.8	6	100	0	58	48	34	0	17	1.47
33466524--33466577	26	2.1	26	100	0	108	37	18	7	37	1.79
33467342--33467393	27	2.0	26	81	11	61	63	3	21	11	1.43
33471218--33471248	5	6.2	5	92	0	53	45	19	19	16	1.86
33472003--33472062	30	2.0	31	86	3	86	43	0	36	20	1.52
33472344--33472378	18	1.9	18	94	0	61	40	17	8	34	1.80
33476986--33477039	28	1.9	28	81	7	65	27	9	12	50	1.71
33480541--33480584	23	2.0	22	81	4	52	65	2	25	6	1.28
33483754--33483817	28	2.3	27	81	5	65	26	7	14	51	1.69
33484185--33484248	32	2.0	32	84	9	85	21	23	17	37	1.94
33486356--33486396	21	2.0	21	85	0	55	34	14	4	46	1.66
33490311--33490415	36	2.9	36	85	7	149	30	12	24	32	1.92
33495812--33495856	21	2.1	21	91	0	72	22	15	20	42	1.89
33506777--33506837	14	4.4	14	78	14	54	52	0	4	42	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33506784--33506838	14	3.9	14	79	15	60	52	0	7	40	1.29
33519977--33520091	61	1.9	61	87	3	169	39	3	6	51	1.44
33521674--33521805	68	1.9	68	89	3	203	21	18	21	38	1.93
33548559--33548672	56	2.0	56	98	0	219	32	23	13	30	1.93
33548699--33548750	27	1.9	27	84	7	70	40	1	5	51	1.37
33549353--33549406	17	3.2	17	69	27	51	20	18	14	46	1.84
33552566--33552855	27	10.8	27	84	0	348	18	15	23	43	1.88
33563624--33563736	58	1.9	58	81	0	136	26	21	14	38	1.91
33569196--33569322	40	3.2	38	75	10	114	33	19	22	25	1.97
33569217--33569335	40	3.0	40	82	10	147	33	21	21	23	1.97
33569393--33569619	41	5.5	41	86	0	310	21	22	26	29	1.99
33569393--33569619	123	1.8	123	88	3	350	21	22	26	29	1.99
33570130--33570203	38	1.9	38	89	5	114	20	4	40	35	1.71
33570950--33571044	38	2.5	38	88	5	140	18	2	42	36	1.63
33572749--33572839	28	3.2	28	65	17	78	38	0	14	47	1.44
33572722--33572865	58	2.5	58	100	0	288	39	0	13	46	1.44
33573544--33573609	30	2.2	29	77	15	73	37	0	7	54	1.29
33573760--33574040	43	6.1	42	73	14	211	30	20	28	20	1.98
33573862--33573896	17	2.1	17	88	0	52	51	22	22	2	1.61
33573822--33573939	60	2.0	60	91	0	191	33	22	27	16	1.95
33573760--33574025	146	1.8	146	90	0	424	31	20	28	19	1.97
33573774--33573982	103	2.0	103	100	0	418	33	21	27	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33573879--33574040	43	3.8	43	91	0	261	31	20	27	20	1.98
33574509--33574558	21	2.4	22	73	10	59	40	2	4	54	1.31
33580661--33580710	21	2.4	22	70	19	52	72	4	20	4	1.18
33585034--33585092	23	2.5	25	78	13	70	33	32	5	28	1.79
33587765--33587814	23	2.2	23	88	0	73	42	16	18	24	1.89
33594294--33594349	5	10.6	5	82	17	53	75	1	1	21	0.99
33594294--33594351	24	2.4	23	78	13	64	74	1	1	22	1.01
33602744--33602916	45	4.0	42	80	6	159	39	15	16	28	1.89
33602770--33603007	89	2.7	89	81	3	228	39	14	16	29	1.89
33602856--33603007	45	3.4	45	83	3	173	38	14	17	29	1.89
33610581--33610714	50	2.7	50	88	2	189	23	32	20	24	1.98
33611333--33611366	17	2.0	17	88	0	50	23	23	14	38	1.92
33616843--33616877	17	2.1	17	88	0	52	25	17	8	48	1.75
33619399--33619522	57	2.2	58	92	1	205	45	4	20	29	1.72
33625486--33625519	17	1.9	17	88	5	50	32	2	5	58	1.37
33625775--33625837	28	2.2	28	91	0	99	31	30	6	31	1.83
33626692--33626838	46	3.1	46	64	19	111	42	2	14	40	1.58
33626570--33626875	97	3.3	97	85	8	378	42	1	16	39	1.57
33626933--33627337	126	3.2	126	88	0	569	36	15	19	28	1.92
33628738--33628942	43	4.8	43	92	0	329	31	27	18	22	1.97
33632404--33633219	114	7.2	114	89	1	1219	26	23	22	27	2.00
33637920--33637956	18	2.1	18	89	0	56	45	5	27	21	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33638587--33638626	7	5.7	7	100	0	80	57	15	0	27	1.38
33640822--33640868	19	2.5	20	75	10	53	31	0	2	65	1.04
33640848--33640902	27	2.2	24	78	15	58	30	1	1	65	1.13
33641506--33641619	59	1.9	59	89	5	178	30	18	12	38	1.87
33641505--33641632	58	2.2	59	85	4	179	31	20	10	37	1.87
33642336--33642369	15	2.2	16	89	5	52	52	29	5	11	1.61
33643311--33643350	6	6.7	6	97	0	62	52	32	5	10	1.56
33643311--33643362	18	2.9	18	85	0	59	51	34	5	7	1.54
33650530--33650567	19	2.0	19	100	0	76	26	5	15	52	1.64
33650886--33650921	18	2.0	18	88	0	54	25	30	8	36	1.85
33652313--33652487	72	2.4	73	83	6	239	54	12	6	26	1.61
33652909--33652974	18	3.7	18	95	0	114	39	12	12	36	1.80
33655637--33655743	19	5.0	19	69	24	70	51	20	24	3	1.64
33655652--33655743	25	3.9	25	73	16	97	50	22	22	4	1.67
33655639--33655743	44	2.4	44	86	0	156	51	20	23	3	1.64
33656023--33656101	32	2.5	33	87	4	108	29	5	12	53	1.60
33656174--33656239	20	3.3	19	75	23	64	42	4	0	53	1.21
33656475--33656514	20	2.0	21	85	14	57	30	5	2	62	1.29
33664571--33664602	3	10.7	3	100	0	64	68	0	31	0	0.90
33666385--33666438	27	2.0	28	85	3	74	44	1	12	40	1.54
33666953--33666986	17	1.9	18	88	5	52	41	8	14	35	1.77
33668530--33668627	44	2.2	45	87	1	135	26	26	15	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33668762--33669007	133	1.8	133	88	1	377	31	22	17	28	1.97
33679776--33679866	30	3.0	30	74	15	96	35	13	9	41	1.77
33680181--33680247	29	2.2	31	82	10	86	52	11	5	29	1.62
33681391--33681425	18	2.0	18	88	5	54	57	2	2	37	1.29
33681380--33681504	44	2.9	44	90	1	180	52	4	10	33	1.54
33687909--33687934	3	8.7	3	100	0	52	34	0	30	34	1.58
33690650--33690711	28	2.2	29	85	8	92	48	3	17	30	1.63
33690650--33690711	29	2.2	28	85	2	88	48	3	17	30	1.63
33691362--33691427	29	2.3	29	82	12	82	22	7	1	68	1.24
33695770--33695909	49	2.8	49	95	1	235	44	7	26	22	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185