genome.fa.s5.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  130  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39919832--39919927	31	3.3	29	80	12	92	0	22	1	76	0.86
39920417--39920491	29	2.6	29	82	2	87	41	5	21	32	1.75
39920851--39921662	75	10.7	75	84	6	951	33	20	17	28	1.96
39920851--39921665	228	3.6	229	87	2	1119	33	20	17	28	1.95
39933779--39933823	20	2.4	19	88	7	65	0	24	0	75	0.80
39934288--39934335	21	2.2	21	82	10	53	6	10	12	70	1.32
39934705--39934779	29	2.6	29	82	6	89	38	8	20	33	1.81
39952050--39952143	21	4.5	21	70	15	61	22	18	15	43	1.87
39952084--39952189	42	2.5	43	84	4	135	16	20	17	44	1.87
39952084--39952202	42	2.8	43	80	8	129	16	19	19	44	1.87
39959866--39959959	44	2.2	43	90	5	145	31	21	8	38	1.83
39962191--39962238	24	2.0	24	84	8	62	68	12	2	16	1.29
39967766--39967809	19	2.3	20	84	7	56	27	20	11	40	1.86
39971927--39972276	86	4.1	86	93	0	565	26	23	24	26	2.00
39971981--39972201	42	5.2	42	61	20	107	26	25	23	24	2.00
39972224--39972499	134	2.1	134	95	1	491	27	19	23	29	1.98
39972435--39972592	45	3.4	44	67	17	122	29	18	22	29	1.97
39972401--39972594	95	2.0	95	96	0	361	29	19	22	28	1.98
39972502--39972758	132	2.0	129	86	3	363	29	18	22	28	1.97
39972708--39972875	40	4.1	40	78	8	124	31	20	20	27	1.97
39972730--39972879	40	3.8	40	82	7	187	30	22	20	27	1.98
39972729--39972880	80	1.9	80	90	0	241	30	22	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39983151--39983219	24	2.7	26	77	11	79	50	7	0	42	1.30
39984870--39984913	6	7.2	6	81	2	52	0	56	0	43	0.99
39984870--39984913	18	2.4	18	92	3	70	0	56	0	43	0.99
39984973--39985022	25	2.0	25	88	0	73	4	30	4	62	1.32
39985209--39985234	11	2.4	11	100	0	52	23	0	15	61	1.33
39988270--39988322	15	3.2	15	80	17	52	54	1	1	41	1.22
39988353--39988391	20	2.0	20	94	0	69	48	0	2	48	1.15
39988480--39988519	20	2.0	20	90	0	62	50	12	10	27	1.72
39988468--39988534	34	1.9	35	90	3	109	46	13	8	31	1.74
39988503--39988542	14	2.9	14	84	0	53	42	17	7	32	1.77
39988595--39988693	28	3.5	28	85	0	126	31	13	25	30	1.93
39988867--39988891	2	12.5	2	100	0	50	52	0	0	48	1.00
39989437--39990060	23	26.6	23	70	11	390	26	14	16	42	1.87
39989422--39990062	70	9.1	69	86	5	838	26	14	16	42	1.86
39991225--39991283	18	3.3	18	80	4	57	44	8	1	45	1.44
39991243--39991283	18	2.3	19	83	12	59	43	9	0	46	1.36
39992552--39992651	35	2.8	35	82	8	105	7	9	8	76	1.17
39992577--39992635	26	2.4	25	86	8	84	3	11	6	77	1.07
39993549--39993605	25	2.3	25	81	0	60	40	14	5	40	1.68
39993844--39993935	23	3.9	22	84	12	112	30	21	26	21	1.99
40000882--40000938	25	2.3	25	81	0	60	40	14	5	40	1.68
40001176--40001266	23	3.9	22	77	15	85	31	20	24	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40001205--40001266	22	2.7	23	82	9	74	33	22	22	20	1.97
40008458--40008841	210	1.8	210	95	0	705	33	18	13	34	1.90
40011868--40011923	22	2.5	23	82	2	69	51	1	1	44	1.22
40011899--40011938	16	2.5	16	91	0	62	47	2	7	42	1.45
40011949--40012118	59	2.9	59	96	0	304	40	6	8	44	1.61
40012628--40012678	24	2.1	24	100	0	102	35	3	29	31	1.76
40031147--40031197	24	2.2	22	83	16	59	52	11	13	21	1.72
40037342--40037396	28	2.0	28	85	0	74	29	0	0	70	0.87
40039478--40039502	3	8.3	3	100	0	50	68	0	0	32	0.90
40040200--40040239	18	2.4	17	91	8	64	22	17	50	10	1.76
40040394--40040449	19	2.9	20	72	20	64	1	8	42	46	1.45
40045705--40045819	50	2.3	50	86	5	153	20	29	18	31	1.96
40045705--40045828	25	5.0	25	72	9	92	20	29	17	32	1.96
40045713--40045844	50	2.6	50	80	4	124	21	27	19	31	1.98
40058536--40058581	6	7.7	6	100	0	92	50	34	15	0	1.44
40058675--40058710	2	18.0	2	100	0	72	0	50	0	50	1.00
40075333--40075609	90	3.1	90	82	2	333	29	23	14	31	1.95
40077501--40077530	8	3.8	8	90	0	51	60	0	0	40	0.97
40078115--40078171	27	2.1	27	84	9	73	31	1	8	57	1.39
40085905--40086123	50	4.4	50	83	7	277	22	28	22	26	1.99
40085905--40086123	99	2.2	99	92	0	357	22	28	22	26	1.99
40087549--40087700	37	3.9	37	81	13	173	26	21	15	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40087617--40087885	46	5.6	46	84	10	340	28	22	14	34	1.93
40087660--40087879	52	4.3	52	85	8	299	27	22	14	35	1.93
40087617--40087885	98	2.7	98	93	0	457	28	22	14	34	1.93
40090780--40090839	28	2.1	28	81	9	68	60	3	3	33	1.30
40098171--40098200	13	2.2	14	94	5	53	36	0	0	63	0.95
40101410--40101787	190	2.0	190	91	1	605	32	21	14	32	1.93
40104441--40104494	26	2.1	26	100	0	108	24	7	11	57	1.58
40116388--40116444	10	6.0	10	78	12	57	28	0	0	71	0.86
40116409--40116445	19	1.9	19	88	0	56	21	0	0	78	0.75
40124243--40124292	21	2.5	21	80	6	59	20	22	14	44	1.86
40128469--40128541	33	2.2	33	92	0	119	36	6	21	34	1.81
40133380--40133474	47	2.0	47	97	0	181	23	15	27	33	1.95
40135870--40135906	18	2.1	18	90	10	58	56	0	8	35	1.29
40148465--40148507	19	2.2	20	91	4	70	25	9	16	48	1.75
40149034--40149138	48	2.2	48	98	1	203	23	33	26	16	1.96
40149204--40149243	16	2.5	16	91	0	62	47	2	7	42	1.45
40149455--40149488	16	2.1	16	100	0	68	70	11	0	17	1.16
40155285--40155333	25	2.0	25	87	0	71	40	0	0	59	0.98
40157085--40157126	22	2.0	22	86	13	61	64	2	11	21	1.38
40157819--40157858	20	2.0	21	90	5	64	37	5	5	52	1.45
40158563--40159570	143	7.1	143	88	0	1392	27	21	20	30	1.98
40167251--40167293	22	2.0	21	86	13	61	62	2	11	23	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40168788--40168820	16	2.0	17	94	5	59	42	15	0	42	1.46
40170474--40170520	20	2.3	21	74	3	51	48	6	2	42	1.40
40170515--40170555	15	2.6	16	81	11	50	46	0	0	53	1.00
40170529--40170619	23	3.9	22	73	15	85	41	2	2	53	1.25
40172962--40173019	26	2.2	26	84	6	73	56	5	10	27	1.54
40173266--40173298	14	2.3	15	94	5	59	30	0	33	36	1.58
40173524--40173583	14	4.3	13	83	8	66	21	0	45	33	1.52
40173524--40173576	7	7.6	7	78	0	61	20	0	47	32	1.51
40173525--40173604	21	3.8	21	81	6	63	25	0	42	32	1.55
40173558--40173596	7	5.6	7	84	0	51	25	0	35	38	1.56
40173551--40173596	14	3.3	14	90	0	56	23	0	39	36	1.55
40173558--40173604	14	3.4	14	80	11	51	27	0	36	36	1.57
40181667--40181695	10	2.7	11	94	5	51	41	0	20	37	1.53
40188526--40188554	3	9.7	3	100	0	58	34	0	0	65	0.93
40188941--40189013	32	2.3	32	88	9	107	46	5	16	31	1.70
40190897--40190958	31	2.0	31	100	0	124	25	19	6	48	1.72
40196655--40196707	11	5.1	10	78	15	54	47	0	1	50	1.12
40196692--40196764	29	2.6	29	93	6	123	65	0	2	31	1.06
40196680--40196825	40	3.9	40	69	29	140	63	0	3	32	1.11
40196703--40196753	9	5.4	9	75	15	50	72	0	1	25	0.95
40196655--40196706	10	4.9	11	77	15	56	48	0	1	50	1.12
40197060--40197095	9	3.9	9	96	3	63	33	0	8	58	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40197060--40197095	19	1.9	18	94	5	63	33	0	8	58	1.28
40197159--40197214	20	2.7	21	75	10	53	23	3	7	66	1.33
40198289--40198338	23	2.1	24	85	3	66	74	18	0	8	1.06
40199390--40199429	19	2.0	20	85	4	55	40	0	2	57	1.12
40201059--40201154	31	3.1	31	95	3	174	45	13	9	31	1.75
40213722--40213795	36	2.0	37	82	7	89	29	1	31	37	1.66
40218261--40218300	19	2.0	20	90	4	64	65	0	2	32	1.06
40218329--40218387	26	2.2	27	84	3	75	38	1	0	59	1.08
40220386--40220413	3	9.3	3	100	0	56	0	32	0	67	0.91
40225738--40225894	43	3.7	41	77	13	176	22	18	29	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185