genome.fa.s5.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  176  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53252078--53252120	20	2.2	20	87	8	61	46	0	2	51	1.13
53252072--53252131	20	2.9	20	75	5	57	50	0	1	48	1.11
53261575--53261610	15	2.5	14	86	8	54	44	8	0	47	1.33
53265128--53265154	13	2.1	13	100	0	54	37	0	0	62	0.95
53268537--53268595	29	2.0	29	84	12	77	25	30	1	42	1.65
53268882--53269439	230	2.4	229	92	1	924	43	19	2	34	1.65
53269904--53269943	14	2.9	14	84	0	53	45	42	0	12	1.42
53271640--53271671	6	5.2	6	96	3	55	65	0	0	34	0.93
53271686--53271744	29	2.0	29	96	0	109	52	5	13	28	1.61
53277034--53277074	21	2.0	21	90	9	66	41	17	4	36	1.71
53281564--53281631	25	2.6	25	84	9	75	1	27	4	66	1.20
53281691--53281722	8	4.0	8	91	0	55	53	0	0	46	1.00
53281651--53281722	16	4.2	16	74	20	56	54	1	1	43	1.17
53283864--53283896	17	1.9	17	100	0	66	30	0	0	69	0.88
53284435--53284490	14	4.2	15	68	27	54	53	0	0	46	1.00
53284543--53284593	26	2.0	26	88	3	77	56	5	1	35	1.35
53293422--53293482	9	6.8	9	96	0	104	37	29	9	22	1.87
53298743--53298836	46	2.0	46	97	0	179	35	29	15	19	1.93
53302169--53302216	12	3.9	12	72	5	51	16	6	14	62	1.51
53308145--53308169	6	4.2	6	100	0	50	32	0	36	32	1.58
53310684--53310708	13	1.9	13	100	0	50	48	0	0	52	1.00
53321780--53321839	30	2.0	30	100	0	120	26	13	23	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53325889--53325922	15	2.3	15	90	5	52	41	0	0	58	0.98
53334809--53334846	19	2.1	18	85	14	51	36	2	0	60	1.11
53352416--53352480	20	3.4	19	78	14	71	43	1	0	55	1.09
53352447--53352503	20	2.8	20	79	15	64	47	0	1	50	1.11
53364875--53364977	47	2.2	47	84	3	145	25	16	21	36	1.94
53366725--53366784	30	2.0	30	83	6	77	38	6	26	28	1.81
53372174--53372308	39	3.4	38	76	10	105	28	27	20	23	1.99
53372200--53372309	38	2.7	43	71	17	108	31	25	19	23	1.98
53373870--53373899	5	6.0	5	100	0	60	60	0	0	40	0.97
53379787--53379830	18	2.3	18	84	7	52	70	2	11	15	1.26
53379795--53379834	18	2.2	19	90	4	64	70	5	12	12	1.33
53381484--53381558	4	18.2	4	70	10	53	4	26	5	64	1.33
53381485--53381590	50	2.1	51	89	5	171	6	26	6	60	1.46
53381583--53381613	14	2.2	14	94	0	53	22	16	0	61	1.34
53382750--53383016	46	5.8	46	92	0	399	40	14	22	22	1.90
53383823--53384383	116	4.8	116	96	0	1016	40	3	9	47	1.52
53383843--53384371	61	9.2	54	67	21	274	40	3	9	47	1.52
53383823--53384383	231	2.4	233	95	0	1018	40	3	9	47	1.52
53387233--53388079	52	16.2	52	99	0	1640	38	13	21	26	1.90
53388043--53388151	37	3.0	37	90	2	177	35	16	22	24	1.95
53389572--53389618	25	2.0	25	83	8	62	27	14	4	53	1.60
53389761--53389790	13	2.3	13	94	0	51	36	26	0	36	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53389879--53390220	46	8.0	46	88	6	374	22	24	15	37	1.93
53390059--53390210	38	4.0	38	99	0	295	23	24	18	33	1.97
53394613--53395149	126	4.3	126	92	1	855	27	21	17	33	1.96
53394613--53395157	251	2.2	252	91	1	880	27	21	17	33	1.96
53395233--53395262	15	2.0	15	93	0	51	46	30	0	23	1.52
53395260--53395436	96	1.8	97	84	6	241	40	13	1	44	1.54
53395433--53395474	16	2.6	17	81	11	52	52	26	2	19	1.58
53401612--53401681	35	2.0	34	91	2	113	44	15	25	12	1.82
53413666--53413699	17	2.0	17	94	0	59	50	0	0	50	1.00
53418473--53418512	16	2.5	16	83	0	53	57	0	0	42	0.98
53423655--53423694	16	2.5	16	83	0	53	57	0	0	42	0.98
53430038--53430062	13	1.9	13	100	0	50	72	0	4	24	1.02
53433548--53433591	22	2.0	22	100	0	88	45	9	27	18	1.79
53434219--53434269	22	2.3	21	81	15	59	37	15	7	39	1.77
53435363--53435411	23	2.1	24	81	11	57	38	4	0	57	1.18
53451197--53451221	8	3.1	8	100	0	50	24	12	52	12	1.72
53455919--53455957	20	2.0	20	90	10	62	30	5	0	64	1.15
53467786--53467816	6	5.2	6	96	0	53	12	64	0	22	1.27
53470425--53470452	14	2.0	14	100	0	56	42	14	7	35	1.73
53473302--53473412	47	2.4	47	83	6	145	36	23	15	25	1.94
53478694--53478786	18	5.2	18	90	0	150	26	23	17	32	1.96
53478694--53478786	36	2.6	36	96	0	168	26	23	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53496143--53496185	20	2.2	20	87	8	61	46	0	2	51	1.13
53499099--53499136	18	2.2	18	85	4	51	7	10	5	76	1.15
53499973--53500004	15	2.1	16	94	5	57	37	0	6	56	1.25
53502065--53502142	33	2.4	32	76	18	79	15	47	14	23	1.81
53515497--53515604	41	2.6	41	79	10	112	42	15	26	14	1.86
53516379--53516553	70	2.5	69	85	2	217	28	14	22	33	1.94
53516571--53516984	76	5.5	75	88	4	525	32	15	20	31	1.94
53517206--53517540	88	3.8	88	89	3	442	28	16	19	35	1.93
53517473--53518381	73	12.5	73	98	0	1698	30	17	17	33	1.94
53525335--53525375	21	1.9	21	85	5	55	82	7	0	9	0.83
53525329--53525382	28	1.9	28	81	7	65	83	5	3	7	0.91
53527113--53527253	43	3.2	42	66	15	115	30	19	23	26	1.98
53527075--53527686	88	7.0	88	87	3	824	29	21	24	25	1.99
53529545--53529586	3	14.0	3	89	0	66	33	4	0	61	1.17
53533935--53534082	76	2.0	75	95	1	269	33	23	23	19	1.97
53534061--53534123	27	2.3	27	86	0	81	25	25	28	20	1.99
53541932--53541972	21	2.0	21	90	0	64	29	21	29	19	1.98
53543878--53543911	16	2.1	16	88	0	50	50	14	17	17	1.79
53546713--53546753	21	2.0	21	90	0	64	29	21	29	19	1.98
53548659--53548692	16	2.1	16	88	0	50	50	14	17	17	1.79
53555337--53555373	10	3.7	10	96	0	65	13	10	0	75	1.04
53556353--53556413	28	2.2	28	80	5	72	47	1	3	47	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53559581--53559630	22	2.2	22	89	7	73	62	0	0	38	0.96
53559574--53559616	18	2.4	18	84	3	52	65	2	0	32	1.06
53559638--53559688	24	2.2	23	85	3	66	54	3	11	29	1.54
53560271--53560337	33	2.0	33	97	0	125	32	28	14	23	1.95
53560622--53560666	22	2.0	22	100	0	90	28	17	0	53	1.44
53565683--53565726	22	2.0	21	86	4	61	36	2	0	61	1.09
53570046--53570099	22	2.4	23	81	9	67	40	16	25	16	1.89
53570826--53570920	7	14.1	7	71	16	58	48	1	1	49	1.15
53572637--53572891	55	4.8	54	80	9	278	36	17	25	21	1.95
53572644--53572844	108	1.8	110	90	4	327	34	17	25	22	1.96
53573083--53573113	16	1.9	16	93	0	53	41	0	22	35	1.54
53575433--53575616	46	4.0	46	94	0	305	37	13	24	24	1.92
53575716--53575748	17	2.0	17	94	5	59	48	0	15	36	1.45
53586666--53586703	20	1.9	19	85	15	51	28	5	10	55	1.56
53592103--53592150	12	3.9	12	78	5	60	16	4	16	62	1.48
53604963--53605019	18	3.2	18	94	0	96	29	17	26	26	1.97
53605910--53605965	25	2.3	26	82	11	66	25	14	1	58	1.45
53606106--53606144	19	2.0	20	85	10	53	66	2	10	20	1.33
53607115--53607147	7	4.7	7	85	14	50	60	0	0	39	0.97
53607115--53607155	16	2.8	15	89	10	59	60	0	0	39	0.96
53607635--53607664	14	2.1	14	100	0	60	23	43	6	26	1.78
53609657--53609700	16	2.8	16	86	10	56	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53612086--53612131	21	2.2	20	84	3	56	26	0	4	69	1.07
53612086--53612135	22	2.4	21	83	6	57	28	0	4	68	1.08
53612110--53612158	26	2.0	26	84	15	68	32	0	6	61	1.21
53618496--53618548	27	2.0	27	85	7	72	54	0	1	43	1.11
53618511--53618544	17	2.0	18	88	11	54	58	0	0	41	0.98
53630306--53630455	61	2.3	64	83	6	189	26	11	14	48	1.77
53646453--53646504	11	4.7	11	74	9	52	34	0	7	57	1.27
53646943--53646994	11	4.7	11	74	9	52	57	7	0	34	1.27
53654849--53654914	33	1.9	35	87	6	100	45	18	10	25	1.81
53657310--53657383	12	6.1	11	70	23	51	32	4	0	63	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185