genome.fa.s5.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  18  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4924269--4924321	24	2.2	25	83	10	65	16	22	18	41	1.90
4924419--4924483	24	2.6	26	75	9	71	18	24	21	35	1.96
4924446--4924579	25	5.3	25	72	12	87	20	23	22	33	1.97
4926029--4926054	13	2.0	13	100	0	52	46	15	23	15	1.83
4930440--4930472	16	2.1	16	94	0	57	33	12	9	45	1.73
4931466--4931532	34	2.0	34	85	5	91	40	2	7	49	1.46
4933019--4933064	23	2.0	23	95	0	83	34	6	0	58	1.24
4933131--4933198	27	2.5	27	85	0	91	23	25	29	22	1.99
4933253--4933394	4	35.2	4	68	21	59	70	0	28	0	0.92
4933247--4933399	10	15.0	10	69	20	68	69	0	29	0	0.93
4933236--4933335	34	2.9	34	78	15	107	66	0	34	0	0.92
4933264--4933404	51	2.7	52	83	8	173	68	0	30	0	0.94
4933250--4933357	18	6.1	18	83	11	127	70	0	28	0	0.94
4933265--4933399	28	5.0	27	74	18	97	70	0	28	0	0.93
4933265--4933394	56	2.4	56	85	13	168	70	0	28	0	0.92
4934198--4934268	27	2.7	26	80	10	90	43	11	0	45	1.40
4936565--4936593	14	2.1	14	100	0	58	37	6	0	55	1.27
4938973--4939010	18	2.1	18	90	0	58	15	44	5	34	1.69
4938976--4939017	18	2.3	18	83	0	57	21	47	2	28	1.63
4939624--4939741	61	1.9	62	84	10	161	54	11	0	33	1.37
4939747--4939778	3	10.7	3	100	0	64	65	0	0	34	0.93
4940064--4940131	27	2.5	27	90	0	100	20	26	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4940169--4940209	19	2.2	19	90	0	64	9	0	14	75	1.04
4940197--4940289	28	3.4	28	91	2	145	48	1	8	41	1.41
4940376--4940434	28	2.1	29	96	3	111	38	8	0	52	1.32
4941575--4941645	28	2.6	25	81	14	88	45	0	11	43	1.40
4941650--4941675	13	2.0	13	100	0	52	23	0	0	76	0.78
4941682--4941722	19	2.2	19	90	0	64	70	2	2	24	1.11
4941682--4941733	19	2.7	19	87	0	59	67	5	1	25	1.23
4942439--4942588	10	15.0	10	63	22	57	0	32	0	67	0.96
4942475--4942585	18	6.1	18	74	15	95	0	32	0	66	0.98
4942467--4942576	38	2.9	38	90	2	159	0	34	0	64	1.00
4942512--4942585	14	5.1	14	72	22	55	0	31	0	68	0.89
4942506--4942585	34	2.8	28	75	24	85	0	32	0	67	0.91
4942546--4942588	22	1.9	23	85	4	61	0	30	0	69	0.88
4942508--4942589	28	2.7	30	75	19	89	0	32	0	67	0.91
4942423--4942590	18	9.8	17	69	20	86	0	33	0	66	0.97
4942487--4942602	42	2.9	40	80	10	105	0	36	0	63	0.94
4942637--4942703	27	2.5	27	92	0	107	16	31	28	23	1.96
4942782--4942837	27	2.0	28	96	3	105	51	0	8	39	1.33
4942786--4942849	27	2.4	27	89	5	94	50	1	9	39	1.44
4944583--4944628	22	2.1	22	88	8	67	41	19	23	15	1.89
4948518--4948563	22	2.1	22	84	8	58	39	19	26	15	1.91
4951191--4951228	15	2.6	15	95	4	69	60	10	5	23	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4973122--4973185	29	2.1	30	83	11	78	46	10	10	31	1.74
4973137--4973216	29	2.6	30	82	5	81	46	12	7	33	1.70
4973459--4973492	16	2.1	16	88	0	50	38	2	0	58	1.13
4976937--4977024	44	2.0	44	91	4	142	25	22	20	31	1.98
4981482--4981603	19	6.1	21	85	5	80	41	13	6	37	1.71
4981482--4981539	22	2.6	22	81	7	64	41	17	5	36	1.72
4981518--4981647	19	6.8	19	89	0	188	38	13	8	40	1.74
4981518--4981647	57	2.3	57	95	0	233	38	13	8	40	1.74
4981973--4982540	132	4.3	132	93	0	960	28	23	19	28	1.98
4982220--4982532	44	7.1	45	62	15	107	28	22	19	29	1.98
4986201--4986334	19	6.7	21	78	10	77	40	14	6	38	1.72
4986201--4986258	22	2.6	22	81	7	64	41	17	5	36	1.72
4986237--4986347	19	5.8	19	89	0	177	37	13	9	39	1.76
4986237--4986340	38	2.7	38	98	0	199	38	12	8	40	1.74
4986763--4987893	44	25.7	45	63	15	182	29	23	18	29	1.98
4986674--4987964	132	9.8	132	95	0	2219	29	23	18	28	1.98
4994501--4994611	19	5.8	19	88	0	168	38	13	9	38	1.76
4994501--4994604	38	2.7	38	96	0	190	39	12	8	39	1.74
4995501--4995662	51	3.2	51	93	0	279	30	20	14	33	1.93
5000317--5000387	30	2.4	30	92	0	124	15	29	28	26	1.96
5000683--5000724	23	1.9	21	85	9	57	35	30	0	33	1.58
5001206--5001272	21	3.3	21	85	4	84	43	16	23	16	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5004549--5004646	23	4.3	23	90	2	162	31	26	21	20	1.98
5004556--5004644	45	2.0	45	95	0	160	31	26	22	19	1.97
5011891--5011929	20	1.9	20	85	15	53	33	0	12	53	1.39
5012265--5012356	25	3.8	24	72	13	80	19	26	19	34	1.96
5024337--5024379	17	2.4	18	76	7	52	39	18	11	30	1.86
5031467--5031526	30	2.0	30	100	0	120	23	0	33	43	1.54
5031477--5031526	15	3.3	15	74	20	59	22	0	36	42	1.54
5046788--5046845	25	2.4	25	88	2	91	34	13	25	25	1.93
5046788--5046852	25	2.6	25	87	4	78	32	15	27	24	1.95
5053976--5054036	31	2.0	31	87	6	88	32	6	13	47	1.68
5057959--5058007	26	2.0	24	92	8	80	61	8	0	30	1.25
5062067--5062118	24	2.2	24	85	0	68	53	9	3	32	1.51
5063200--5063229	12	2.4	12	94	5	51	33	6	30	30	1.83
5064043--5064095	24	2.2	24	82	0	70	52	11	3	32	1.55
5067648--5067743	6	16.0	6	93	0	138	0	39	0	60	0.97
5067763--5068028	135	2.0	135	96	0	487	25	28	14	32	1.94
5073572--5073628	30	1.9	30	88	0	87	21	35	31	12	1.90
5074224--5074267	17	2.6	17	96	0	79	40	0	18	40	1.50
5077515--5077806	103	2.7	104	89	5	451	33	20	15	30	1.93
5078564--5078596	15	2.1	16	94	5	59	63	0	0	36	0.95
5083889--5083951	32	2.0	32	100	0	126	39	9	0	50	1.35
5089282--5089344	32	2.0	32	100	0	126	39	9	0	50	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5101886--5101943	29	1.9	28	83	13	71	36	15	17	31	1.91
5102585--5102754	86	2.0	86	98	0	331	42	9	15	31	1.79
5102877--5103088	45	5.0	39	78	15	183	19	19	21	39	1.92
5102904--5103103	45	4.4	45	91	0	310	19	19	21	40	1.92
5110438--5111413	331	2.9	331	99	0	1925	39	15	14	30	1.88
5111604--5111797	91	2.2	90	85	4	268	31	12	22	32	1.91
5114171--5114209	9	4.5	8	84	15	51	74	0	25	0	0.82
5114170--5114210	18	2.3	18	91	8	66	75	0	24	0	0.80
5114617--5114656	21	1.9	21	94	0	71	22	12	10	55	1.67
5114955--5115013	29	2.0	29	87	6	84	42	1	1	54	1.20
5115041--5115097	9	6.1	9	76	15	53	42	0	1	56	1.10
5115040--5115102	19	3.2	20	84	6	76	41	0	1	57	1.08
5115044--5115097	28	1.9	28	85	14	76	44	0	1	53	1.11
5115629--5115660	7	4.7	7	96	3	57	46	0	0	53	1.00
5123766--5123819	20	2.8	20	83	8	58	62	0	1	35	1.06
5123816--5123862	19	2.5	19	86	6	69	59	0	0	40	0.97
5123775--5123867	19	4.1	24	65	28	60	61	0	0	38	0.96
5125400--5125594	98	2.0	98	95	0	354	36	24	10	28	1.88
5126258--5126307	26	2.0	26	88	4	75	56	4	8	32	1.47
5126918--5126992	19	3.8	19	87	6	96	37	14	9	38	1.79
5126929--5126991	21	3.1	21	90	9	112	38	12	9	39	1.76
5127670--5127762	35	2.6	35	82	1	123	44	31	9	15	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5134026--5134064	19	2.1	19	95	0	69	30	5	23	41	1.76
5136426--5136460	18	1.9	18	88	0	52	57	2	5	34	1.37
5137940--5138914	44	22.1	45	62	10	152	29	22	18	29	1.97
5137830--5139028	132	9.1	132	95	0	1920	29	22	18	29	1.97
5140609--5140817	38	5.4	39	86	4	305	64	0	2	32	1.08
5140609--5140808	78	2.6	78	98	0	382	63	0	3	33	1.10
5143681--5143863	41	4.5	41	88	2	165	21	27	20	30	1.98
5143716--5143877	41	4.0	41	93	1	254	22	28	20	28	1.99
5143722--5143895	82	2.1	82	87	4	244	22	27	20	28	1.99
5145529--5145553	13	1.9	13	100	0	50	68	24	0	8	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185