genome.fa.s5.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  74  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23287728--23287786	22	2.7	23	78	7	68	28	42	3	25	1.71
23287968--23288026	22	2.7	23	78	7	68	28	42	3	25	1.71
23287905--23288230	163	2.0	163	100	0	652	36	31	4	26	1.78
23288131--23288189	22	2.7	23	78	7	68	28	42	3	25	1.71
23291958--23292005	22	2.0	23	84	11	62	54	2	2	41	1.24
23292030--23292234	43	4.8	43	88	0	250	22	17	30	29	1.96
23293537--23293580	21	2.0	22	86	4	63	36	4	13	45	1.64
23293770--23293814	23	2.0	23	81	0	54	22	0	15	62	1.33
23294097--23294173	37	2.1	37	80	11	86	37	7	2	51	1.45
23295914--23295964	18	2.5	20	81	15	61	56	0	1	41	1.10
23295887--23295986	42	2.4	42	81	9	107	54	0	2	44	1.11
23296391--23296433	23	1.9	22	86	13	61	51	0	11	37	1.39
23299665--23299774	54	2.0	54	89	3	168	25	44	1	28	1.64
23301435--23302214	113	6.9	113	83	4	727	32	18	22	27	1.97
23301435--23302506	340	3.2	337	83	5	1175	31	18	21	27	1.97
23302008--23302411	208	1.9	209	87	2	598	33	17	21	27	1.96
23302664--23302734	14	5.0	14	69	16	56	22	1	35	40	1.63
23303876--23303922	22	2.1	22	96	0	85	27	8	23	40	1.83
23304229--23305068	71	11.8	71	99	0	1655	26	5	18	49	1.69
23305204--23305233	14	2.1	14	100	0	60	26	13	6	53	1.64
23306658--23306697	11	3.7	11	90	3	64	35	10	27	27	1.89
23308057--23308511	40	9.7	40	69	28	253	42	11	1	43	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23308031--23308471	57	7.6	57	77	18	329	43	11	1	43	1.51
23308060--23308543	97	5.0	97	99	0	959	42	11	2	44	1.51
23308040--23308527	17	25.5	17	67	26	175	43	11	1	43	1.51
23308690--23308768	18	4.4	18	68	25	69	45	18	0	35	1.50
23308673--23308949	26	11.0	26	82	11	337	47	19	0	32	1.55
23308941--23308994	9	5.7	10	79	20	55	42	20	0	37	1.52
23308880--23308994	18	6.5	18	69	26	70	46	20	0	33	1.51
23314445--23314515	21	3.4	21	80	0	79	33	18	45	2	1.64
23314739--23314772	14	2.4	14	95	0	59	17	8	20	52	1.71
23314840--23315128	126	2.3	125	82	1	335	28	21	21	28	1.98
23314844--23315214	42	8.9	40	79	9	303	27	21	20	30	1.98
23314826--23315214	84	4.6	81	77	9	357	27	20	21	31	1.98
23314925--23315215	126	2.3	126	90	1	440	25	21	20	32	1.98
23315912--23315952	21	2.0	21	85	0	55	43	19	21	14	1.87
23318375--23318460	40	2.2	41	87	6	124	41	3	5	48	1.44
23320079--23320123	22	2.0	22	82	0	54	40	4	4	51	1.42
23323082--23323122	8	5.1	8	81	0	55	65	2	0	31	1.05
23325530--23325566	19	2.0	19	89	5	58	40	5	2	51	1.39
23325549--23325593	22	2.0	22	82	0	54	40	4	4	51	1.42
23327781--23327879	25	4.0	25	78	0	81	21	26	17	35	1.95
23327839--23327894	24	2.3	25	90	3	87	17	23	19	39	1.92
23327807--23328005	25	8.0	25	77	7	145	22	25	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23331568--23331606	20	2.0	20	85	10	53	33	10	0	56	1.33
23332299--23332341	22	2.0	22	86	9	61	60	0	0	39	0.97
23334897--23334930	5	7.0	5	90	6	52	44	0	0	55	0.99
23335836--23335960	43	2.9	43	75	7	119	21	20	28	29	1.98
23339309--23339344	17	2.1	17	89	5	54	19	2	11	66	1.35
23340259--23340283	2	12.5	2	100	0	50	48	0	0	52	1.00
23342128--23342290	43	3.8	43	84	9	217	32	25	20	20	1.97
23344511--23344538	7	4.0	7	100	0	56	85	0	0	14	0.59
23345335--23345360	8	3.2	8	100	0	52	38	0	0	61	0.96
23347967--23348110	58	2.5	57	82	6	168	45	0	2	51	1.18
23348278--23348316	16	2.4	16	100	0	78	23	25	10	41	1.86
23359885--23360127	50	4.8	50	91	0	369	19	30	23	26	1.98
23360222--23360253	13	2.5	13	94	0	55	56	12	0	31	1.37
23360463--23360522	30	2.0	30	87	3	86	30	23	3	43	1.70
23363346--23363399	18	3.0	18	83	5	65	37	18	3	40	1.69
23367020--23367163	70	2.1	70	97	0	270	40	11	11	36	1.78
23378407--23378900	249	2.0	248	92	2	823	28	13	19	37	1.91
23390682--23390888	40	5.2	40	86	0	279	20	28	17	33	1.95
23390759--23390859	20	5.1	20	65	4	69	20	32	17	28	1.96
23391920--23392126	40	5.2	40	86	0	279	20	28	17	33	1.95
23391997--23392097	20	5.1	20	65	4	69	20	32	17	28	1.96
23394787--23394839	24	2.2	24	83	6	63	47	5	1	45	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23395860--23396000	69	2.0	69	95	0	255	36	17	10	35	1.85
23406092--23406118	3	9.0	3	100	0	54	66	0	33	0	0.92
23406611--23406657	21	2.2	21	96	0	85	36	17	8	38	1.80
23407224--23407276	13	4.1	13	80	9	72	35	22	5	35	1.78
23411651--23411728	25	3.2	25	87	1	104	12	34	30	21	1.91
23414707--23414885	99	1.8	98	87	4	272	41	12	11	34	1.79
23414873--23414941	35	2.0	35	82	0	84	34	17	8	39	1.80
23415312--23415507	41	4.8	41	93	1	313	32	23	18	25	1.97
23426461--23426636	46	3.8	46	94	1	291	29	24	9	36	1.87
23427736--23427772	10	3.5	10	86	13	56	56	0	0	43	0.99
23427738--23427781	12	3.8	12	88	11	74	54	0	0	45	0.99
23427736--23427781	22	2.1	22	100	0	92	54	0	0	45	0.99
23429137--23429282	41	3.6	41	83	0	177	36	15	27	21	1.93
23429207--23429270	20	3.2	20	71	4	56	37	17	26	18	1.93
23433936--23433980	3	15.0	3	100	0	90	33	0	0	66	0.92
23434339--23434377	18	2.2	17	90	4	60	12	5	7	74	1.20
23434492--23434807	109	2.9	109	94	2	541	28	17	19	34	1.94
23438194--23438233	8	5.0	8	85	8	55	80	7	0	12	0.91
23438194--23438233	16	2.5	16	92	8	64	80	7	0	12	0.91
23438194--23438244	16	3.2	16	83	5	50	78	5	3	11	1.06
23438238--23438276	6	6.3	6	83	16	53	76	0	23	0	0.78
23438239--23438278	11	3.1	14	82	17	52	75	0	25	0	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23439390--23439505	43	2.7	44	82	2	128	29	14	31	25	1.95
23445423--23446929	50	30.2	50	69	7	734	32	24	19	23	1.97
23445473--23446459	100	9.9	100	84	2	1034	32	24	20	22	1.98
23448681--23448711	10	3.1	10	95	0	53	29	3	0	67	1.06
23448949--23448987	18	2.2	17	86	4	51	12	7	7	71	1.29
23449102--23449405	109	2.8	109	96	1	549	30	16	18	34	1.93
23449774--23449925	35	4.3	35	87	2	180	14	13	32	39	1.85
23454455--23454563	32	3.4	32	80	8	114	44	9	7	38	1.64
23456858--23456898	17	2.4	17	84	8	57	58	0	12	29	1.34
23456905--23456958	11	4.8	11	77	11	56	42	0	27	29	1.56
23458190--23458256	35	1.9	35	93	0	116	44	4	25	25	1.72
23459825--23459863	5	7.8	5	97	0	69	20	23	41	15	1.90
23469994--23470031	12	3.2	12	92	0	58	34	26	23	15	1.95
23474260--23474300	21	2.0	21	90	0	64	19	29	21	29	1.98
23493113--23493297	46	4.0	46	90	0	271	29	25	9	36	1.87
23494526--23494573	17	2.9	17	90	3	71	54	18	0	27	1.44
23506232--23506270	6	6.5	6	100	0	78	15	17	48	17	1.81
23513273--23514234	481	2.0	481	99	0	1915	33	19	16	30	1.94
23520408--23520531	62	2.0	62	98	0	239	42	16	18	22	1.88
23531002--23531082	36	2.2	36	91	0	126	33	33	18	14	1.92
23532972--23533106	68	2.0	69	85	1	182	50	4	5	40	1.45
23537732--23537815	21	4.1	21	87	6	102	14	23	16	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23539709--23539748	21	1.9	21	89	0	62	20	42	20	17	1.89
23539956--23539990	17	1.9	19	88	11	56	17	8	8	65	1.44
23541466--23541592	30	4.4	30	91	5	158	38	0	18	43	1.50
23541707--23542380	125	5.4	126	87	3	930	39	15	17	27	1.90
23542451--23542521	25	2.8	25	82	4	81	52	1	23	22	1.55
23543817--23543848	15	2.1	16	94	5	57	31	0	6	62	1.20
23544522--23544555	18	1.9	18	88	5	52	26	2	8	61	1.40
23546555--23546699	27	5.4	27	85	0	157	19	17	20	42	1.89
23560490--23560523	17	2.0	17	88	0	50	67	14	0	17	1.23
23560890--23560925	12	3.0	12	84	15	56	80	2	0	16	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185