genome.fa.s5.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  64  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20175438--20175795	177	2.0	177	94	0	626	27	12	22	37	1.90
20177860--20177897	15	2.5	15	80	16	51	60	2	5	31	1.33
20178465--20178505	21	2.0	21	86	13	59	48	7	12	31	1.68
20182068--20182097	16	1.9	16	93	6	53	50	20	0	30	1.49
20182558--20182587	16	1.9	16	93	6	53	20	23	0	56	1.42
20183525--20183551	2	13.5	2	100	0	54	51	0	0	48	1.00
20189437--20189479	21	2.0	21	100	0	86	20	23	23	32	1.98
20193997--20194334	115	2.9	114	88	2	516	40	17	21	20	1.91
20195675--20195846	45	3.9	45	82	7	208	23	15	25	36	1.93
20195670--20195846	90	2.0	88	84	4	230	23	15	25	36	1.94
20199147--20199175	15	1.9	15	100	0	58	13	6	13	65	1.45
20210658--20210695	20	1.9	20	88	0	58	13	23	23	39	1.90
20220560--20220599	19	2.1	19	100	0	80	37	20	15	27	1.92
20223234--20223275	16	2.6	16	88	0	66	57	2	7	33	1.39
20225007--20225048	6	6.8	6	86	13	59	19	2	0	78	0.86
20225007--20225048	13	3.4	12	84	15	59	19	2	0	78	0.86
20225063--20225663	299	2.0	299	97	0	1139	28	12	19	39	1.88
20226092--20226126	2	17.5	2	100	0	70	51	0	48	0	1.00
20226342--20226381	21	1.9	21	85	10	55	47	20	7	25	1.75
20229502--20229546	22	2.0	22	83	12	56	31	15	4	48	1.65
20230497--20230633	68	2.0	68	95	0	247	35	22	16	25	1.95
20234918--20234964	25	2.0	24	83	8	60	59	2	2	36	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20247466--20247497	15	2.1	15	100	0	64	31	6	0	62	1.20
20248174--20248246	37	2.0	37	86	5	103	20	23	26	30	1.99
20248175--20248258	18	4.6	18	74	4	69	21	22	26	29	1.99
20248175--20248280	55	1.9	56	88	1	160	21	22	25	30	1.99
20250298--20250336	16	2.3	19	79	20	50	43	5	5	46	1.48
20250584--20250758	75	2.3	76	83	5	228	47	8	10	33	1.68
20250766--20250813	24	2.0	24	88	4	71	35	10	8	45	1.68
20250649--20251160	77	6.8	77	74	15	333	42	8	9	38	1.68
20251580--20251713	17	7.9	17	69	14	89	30	0	3	65	1.10
20251564--20251724	49	3.2	49	90	3	232	31	0	3	64	1.13
20251603--20251685	21	3.6	23	68	17	64	30	0	2	67	1.03
20256927--20257075	75	2.0	77	80	5	169	46	8	10	34	1.68
20257279--20257311	16	2.1	16	94	0	57	54	0	0	45	0.99
20257573--20257597	2	12.5	2	100	0	50	52	0	0	48	1.00
20259538--20259760	69	3.3	69	87	2	299	40	5	20	33	1.77
20270241--20270310	20	3.6	19	73	9	61	40	0	1	58	1.07
20270344--20270390	24	2.0	24	82	0	58	46	4	8	40	1.54
20271548--20271640	47	2.0	47	97	0	177	34	16	22	26	1.95
20272210--20272235	11	2.4	11	100	0	52	38	0	0	61	0.96
20272225--20272275	22	2.3	23	77	16	61	45	0	3	50	1.20
20272218--20272274	19	2.7	22	84	12	68	40	0	3	56	1.17
20272181--20272256	30	2.5	30	77	16	75	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20276549--20276791	50	4.8	49	76	6	175	23	25	21	28	1.99
20281111--20281200	45	2.0	45	100	0	180	31	8	13	46	1.74
20282989--20283043	24	2.2	25	83	3	76	45	1	29	23	1.63
20283526--20283567	20	2.1	20	82	8	50	40	4	16	38	1.70
20287839--20287894	28	2.0	28	85	0	76	53	12	3	30	1.55
20303778--20303815	3	12.7	3	100	0	76	34	0	34	31	1.58
20309910--20310081	27	6.4	27	89	0	238	44	20	17	17	1.87
20310543--20310607	33	1.9	34	84	3	87	29	23	20	27	1.98
20312625--20312664	20	2.0	21	90	5	64	50	0	30	20	1.49
20312651--20312694	23	1.9	23	86	9	63	36	0	27	36	1.57
20312979--20313015	9	4.1	9	85	0	56	29	10	10	48	1.72
20321938--20321981	22	2.0	23	86	4	63	52	6	0	40	1.28
20324171--20324425	138	1.9	137	80	2	305	33	22	20	23	1.97
20337101--20337136	17	2.1	18	89	5	56	66	11	0	22	1.22
20351310--20351370	27	2.1	29	85	8	81	34	37	4	22	1.76
20352570--20352613	16	2.8	16	79	3	54	20	40	20	18	1.91
20359197--20359251	26	2.1	26	86	0	74	23	16	16	43	1.87
20360485--20360530	23	2.0	23	80	16	60	19	15	19	45	1.85
20360493--20360544	23	2.3	23	93	0	86	19	17	23	40	1.91
20362212--20362259	20	2.4	20	82	0	60	33	16	31	18	1.94
20368132--20368207	23	3.3	23	86	0	116	46	21	17	15	1.84
20368124--20368213	46	2.0	46	90	0	144	44	23	16	15	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20373916--20373978	31	2.0	31	96	0	117	33	14	15	36	1.88
20376606--20376645	22	1.9	22	90	10	66	50	15	10	25	1.74
20379913--20380061	48	3.1	49	83	5	180	22	30	20	26	1.98
20387492--20387688	48	4.1	48	83	2	243	22	29	20	27	1.99
20392024--20392121	6	16.8	6	74	13	62	71	12	4	12	1.28
20392036--20392146	42	2.6	40	72	14	98	72	9	8	9	1.27
20393595--20393924	86	3.8	85	84	4	403	29	23	22	24	1.99
20393595--20393948	172	2.1	173	85	2	471	30	22	23	23	1.99
20394089--20394198	45	2.5	45	84	1	132	27	21	22	28	1.99
20394085--20394340	85	2.9	87	70	8	243	27	19	25	28	1.99
20394042--20394358	44	7.3	43	73	7	201	28	20	23	28	1.99
20394275--20394373	44	2.2	44	80	7	103	27	21	27	24	1.99
20394085--20394416	173	1.9	174	82	5	413	28	21	23	27	1.99
20401473--20401875	218	1.8	221	89	4	647	36	7	11	44	1.68
20403754--20404450	230	3.0	235	83	7	830	37	10	7	45	1.66
20408796--20408890	44	2.2	44	96	0	172	24	22	12	41	1.88
20410471--20410524	18	2.9	17	76	15	54	46	1	3	48	1.30
20410430--20410895	226	2.1	227	86	3	652	38	9	6	45	1.62
20411038--20411252	5	43.0	5	100	0	430	40	0	0	60	0.97
20413488--20413544	21	2.7	22	76	7	66	40	17	24	17	1.91
20413488--20413591	42	2.5	41	81	4	127	41	17	22	19	1.90
20414527--20414563	16	2.3	16	95	0	65	40	5	2	51	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20414758--20414799	21	2.0	21	85	0	57	50	14	2	33	1.56
20421512--20421553	21	2.0	21	95	0	75	42	21	9	26	1.83
20424958--20424986	14	2.0	15	93	6	51	0	13	6	79	0.93
20429700--20429759	22	2.7	23	73	19	63	66	6	0	26	1.16
20429709--20429742	4	8.0	4	90	9	50	73	2	0	23	0.97
20431096--20431148	23	2.4	22	76	20	56	9	18	1	69	1.25
20433891--20433990	45	2.2	45	89	3	148	30	38	8	24	1.84
20442127--20442188	24	2.6	23	80	7	79	24	8	20	46	1.77
20442251--20442316	27	2.5	27	83	9	91	19	22	22	34	1.96
20442313--20442369	26	2.2	26	87	6	80	15	19	28	36	1.92
20442363--20442562	32	6.3	32	86	2	260	24	19	17	39	1.92
20442554--20442605	22	2.4	22	83	0	68	17	21	19	42	1.89
20449105--20449213	43	2.6	43	85	8	143	22	16	27	33	1.95
20449108--20449249	43	3.4	43	80	12	127	23	15	26	34	1.95
20451109--20451171	11	5.4	11	72	12	54	63	0	3	33	1.10
20451088--20451181	36	2.5	36	94	5	161	65	0	2	31	1.04
20452283--20452322	14	2.9	14	88	0	62	32	5	17	45	1.70
20452306--20452345	20	2.0	20	90	0	62	27	10	12	50	1.72
20452291--20452357	34	1.9	35	93	3	118	31	7	13	47	1.70
20452756--20452794	18	2.2	18	100	0	78	46	10	0	43	1.37
20454470--20454502	12	2.8	12	95	0	57	54	6	39	0	1.25
20454482--20454521	19	2.1	19	90	0	62	47	5	45	2	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20455764--20455854	40	2.3	40	82	0	101	54	5	4	35	1.43
20455778--20455856	40	2.0	40	87	0	113	54	5	3	36	1.41
20461174--20461218	23	2.0	22	84	16	58	35	0	17	46	1.49
20461653--20461693	21	2.0	21	85	9	57	43	0	24	31	1.54
20463891--20463927	20	1.9	19	89	10	58	43	5	0	51	1.24
20464798--20464838	15	2.6	17	77	14	52	41	7	0	51	1.30
20465304--20465349	24	2.0	24	82	4	58	15	6	17	60	1.55
20468336--20468415	25	3.2	25	75	7	81	28	21	27	22	1.99
20469860--20469918	30	2.0	30	100	0	118	27	6	15	50	1.68
20478400--20478792	195	2.0	195	96	1	734	34	22	13	29	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185