genome.fa.s5.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  156  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47063383--47063444	19	3.3	18	80	8	70	20	1	8	69	1.23
47063391--47063464	18	3.9	19	76	15	64	24	1	5	68	1.18
47063381--47063463	37	2.2	39	84	6	107	26	1	6	66	1.22
47065231--47065258	7	4.0	7	100	0	56	14	42	0	42	1.45
47069047--47069082	15	2.5	15	91	8	58	52	5	0	41	1.24
47070002--47070039	14	2.7	15	88	8	53	50	2	5	42	1.39
47070031--47070069	20	2.0	20	85	5	53	35	0	7	56	1.28
47070891--47070927	18	2.1	18	100	0	74	51	21	5	21	1.68
47075867--47075906	5	8.2	5	88	5	64	20	2	0	77	0.88
47075867--47075903	19	1.9	19	94	0	65	18	2	0	78	0.87
47076742--47076776	16	2.1	18	89	10	56	51	0	48	0	1.00
47077039--47077097	26	2.3	26	88	5	84	22	44	28	5	1.74
47077058--47077097	8	4.8	8	82	11	53	22	47	27	2	1.64
47077647--47077694	18	2.8	17	84	6	69	31	16	10	41	1.82
47077770--47077863	35	2.6	35	83	5	125	37	13	10	38	1.80
47077792--47077849	17	3.3	17	76	13	64	36	13	10	39	1.79
47077939--47077987	17	2.9	17	84	6	55	28	10	8	53	1.63
47077947--47078037	17	5.2	16	76	15	83	30	8	9	50	1.66
47077968--47078005	19	2.0	20	94	5	69	23	5	10	60	1.50
47077951--47078024	36	2.0	37	82	7	89	27	8	9	55	1.60
47078017--47078095	19	4.1	20	85	9	119	37	11	10	40	1.75
47077910--47078114	53	3.7	53	72	16	141	33	10	10	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47078017--47078114	38	2.5	38	85	9	119	36	10	10	42	1.73
47079506--47079543	18	2.2	18	81	9	53	52	0	0	47	1.00
47080615--47080665	6	8.2	6	77	14	50	43	3	0	52	1.19
47080670--47080769	50	2.0	49	84	1	128	33	5	5	57	1.42
47092764--47092814	18	2.9	18	74	14	52	29	31	0	39	1.57
47108527--47108579	27	1.9	28	88	3	81	32	1	0	66	1.03
47111996--47112057	29	2.1	30	84	6	81	32	8	16	43	1.77
47135136--47135177	19	2.2	20	82	4	50	54	11	0	33	1.37
47135273--47135300	14	2.0	14	100	0	56	14	21	21	42	1.88
47147597--47147646	15	3.3	15	74	0	55	28	16	6	50	1.68
47167426--47167465	19	2.2	18	86	4	53	62	12	2	22	1.42
47170714--47170766	23	2.3	23	83	6	72	41	7	0	50	1.30
47172649--47172686	20	1.9	20	88	0	58	28	5	13	52	1.61
47172634--47172700	34	1.9	35	87	3	100	32	5	13	47	1.67
47175109--47175176	25	2.6	27	81	15	88	39	8	26	25	1.85
47176062--47176129	11	6.5	11	75	23	51	36	1	0	61	1.05
47176019--47176076	22	2.5	22	80	5	71	32	1	0	65	1.03
47176053--47176134	39	2.1	38	93	2	137	34	1	0	64	1.01
47181763--47181808	22	2.1	22	84	4	58	30	10	0	58	1.32
47188118--47188205	41	2.2	40	89	2	131	25	18	20	36	1.95
47189240--47189283	17	2.6	17	92	3	72	29	0	20	50	1.49
47190034--47190309	46	6.0	46	93	0	455	35	8	25	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47193082--47193128	20	2.3	20	85	0	67	21	12	36	29	1.91
47198206--47198244	11	3.7	10	83	10	51	74	0	25	0	0.82
47198199--47198240	17	2.5	17	80	7	50	73	0	26	0	0.83
47199122--47199252	41	3.3	40	78	5	117	26	18	20	34	1.96
47207542--47207580	17	2.4	17	95	4	71	46	12	28	12	1.79
47208971--47209008	20	1.9	20	89	10	60	26	2	2	68	1.16
47211034--47211072	17	2.3	18	83	16	57	20	12	0	66	1.24
47211037--47211075	16	2.5	15	88	12	60	23	12	0	64	1.28
47215713--47215814	21	5.0	21	75	2	82	45	15	22	16	1.85
47217235--47217297	33	2.0	33	84	6	85	44	7	14	33	1.74
47219504--47219552	20	2.5	21	84	15	61	34	4	10	51	1.55
47221417--47221474	21	2.8	21	76	7	55	36	13	12	37	1.82
47228655--47228695	20	2.0	20	95	0	73	60	19	12	7	1.54
47232708--47233038	167	2.0	162	93	2	563	31	30	10	26	1.91
47234582--47234641	31	1.9	31	82	0	75	20	21	11	46	1.82
47240251--47240331	39	2.1	39	88	0	117	49	8	18	23	1.75
47246473--47246510	19	2.0	19	100	0	76	31	0	0	68	0.90
47253508--47253555	15	3.1	15	82	5	60	72	12	0	14	1.11
47256926--47257002	38	2.0	38	92	0	127	31	5	28	35	1.79
47260036--47260069	17	2.0	17	88	0	50	23	23	14	38	1.92
47261898--47261941	20	2.3	19	84	4	52	50	2	9	38	1.47
47263793--47263827	18	2.0	18	94	5	63	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47263800--47263845	18	2.8	17	83	9	51	45	0	0	54	0.99
47263812--47263989	26	7.2	25	65	16	77	40	1	3	55	1.24
47263915--47263950	18	2.0	18	100	0	72	33	0	0	66	0.92
47263941--47263998	13	4.3	13	79	16	64	41	1	0	56	1.09
47263919--47263958	18	2.2	18	86	0	53	42	0	0	57	0.98
47263723--47264023	121	2.5	120	93	1	514	40	1	4	52	1.33
47264204--47264294	45	2.0	44	85	2	119	35	28	5	30	1.80
47264273--47264326	16	3.4	16	86	0	81	31	35	1	31	1.69
47271755--47271886	56	2.4	56	93	0	228	44	11	15	28	1.81
47273750--47273801	10	5.1	10	77	13	61	80	9	9	0	0.90
47273759--47273802	19	2.3	19	84	0	61	79	9	11	0	0.93
47273768--47273846	19	4.4	18	75	18	85	75	11	12	0	1.04
47279728--47279819	23	3.9	23	78	15	89	30	21	27	20	1.98
47280074--47280129	29	1.9	29	100	0	112	32	10	10	46	1.73
47287607--47287646	19	2.1	19	90	0	62	30	20	0	50	1.49
47287840--47287998	44	3.7	44	82	8	186	38	20	19	21	1.94
47287834--47288015	39	4.4	39	77	12	175	39	19	19	21	1.93
47287832--47288015	45	4.2	44	79	10	209	39	20	19	21	1.92
47291670--47291696	5	5.4	5	100	0	54	77	0	22	0	0.76
47296765--47296828	22	2.9	22	85	0	92	18	21	17	42	1.89
47311066--47311101	6	5.8	6	93	3	54	77	0	2	19	0.88
47311820--47311889	35	2.0	35	100	0	140	42	2	20	34	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47315143--47315239	47	2.1	47	100	0	194	29	24	14	30	1.95
47322162--47322195	16	2.0	17	88	11	52	70	0	0	29	0.87
47327322--47327370	16	3.1	16	74	8	55	42	6	8	42	1.59
47329895--47329948	4	13.5	4	100	0	108	25	0	24	50	1.50
47330076--47330108	17	1.9	17	100	0	66	36	12	27	24	1.91
47339670--47339707	19	2.1	19	90	5	60	57	5	7	28	1.49
47346042--47346079	2	19.0	2	88	0	58	0	2	44	52	1.14
47351653--47351680	3	9.3	3	100	0	56	32	0	0	67	0.91
47354133--47354169	16	2.2	17	90	4	58	37	2	54	5	1.38
47359257--47359308	24	2.2	24	85	0	68	38	3	7	50	1.50
47368319--47368356	3	12.7	3	100	0	76	31	0	0	68	0.90
47373716--47373740	9	2.8	9	100	0	50	12	12	12	64	1.51
47376714--47376781	33	2.1	33	94	0	118	36	25	16	22	1.94
47382111--47382171	12	5.4	12	73	23	53	18	3	0	78	0.88
47382111--47382179	22	3.2	20	80	13	75	18	4	0	76	0.94
47382114--47382171	17	3.5	15	82	13	62	17	3	0	79	0.87
47382396--47382456	12	5.4	12	73	23	53	18	3	0	78	0.88
47382396--47382464	22	3.2	20	80	13	75	18	4	0	76	0.94
47382399--47382456	17	3.5	15	82	13	62	17	3	0	79	0.87
47382088--47382657	285	2.0	284	99	0	1122	27	17	14	40	1.88
47383478--47383516	20	2.0	20	89	0	60	84	2	7	5	0.84
47383478--47383520	10	4.0	10	82	11	50	83	2	6	6	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47386060--47386084	10	2.5	10	100	0	50	8	0	0	92	0.40
47387245--47387311	23	3.0	21	76	19	66	26	4	1	67	1.19
47387493--47387551	25	2.5	23	79	12	66	32	10	1	55	1.43
47387523--47387572	20	2.5	20	77	3	57	38	6	0	56	1.24
47396576--47396827	24	10.8	24	68	13	123	54	4	6	34	1.48
47398488--47398540	15	3.5	15	85	10	72	37	41	0	20	1.53
47399104--47399504	41	9.8	41	74	7	287	38	22	19	20	1.94
47406199--47406249	6	8.5	6	80	8	50	76	0	1	21	0.88
47427027--47427072	18	2.5	19	76	16	51	65	4	2	28	1.23
47441568--47441607	20	2.0	21	90	5	64	25	10	12	52	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185