genome.fa.s5.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  23  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6675175--6675392	46	4.7	46	80	5	210	22	30	20	26	1.99
6682584--6682638	28	1.9	29	88	3	85	18	43	23	14	1.87
6684372--6684544	47	3.7	47	75	10	192	30	28	18	22	1.97
6684325--6684537	93	2.3	93	90	0	327	29	29	18	22	1.98
6684318--6684493	46	3.8	46	75	10	160	30	28	19	21	1.98
6686650--6686738	42	2.1	42	95	4	162	30	33	15	20	1.94
6696332--6696489	80	2.0	80	96	0	289	30	10	20	39	1.85
6699461--6699642	28	6.5	28	96	0	303	26	12	28	32	1.93
6702487--6702552	25	2.6	25	87	0	87	37	12	18	31	1.87
6708148--6708340	40	4.8	41	86	5	261	27	27	22	22	1.99
6708154--6708338	80	2.3	80	90	0	291	27	27	23	22	1.99
6718123--6718161	17	2.2	18	90	4	62	10	25	48	15	1.76
6734681--6735514	67	12.4	67	100	0	1668	22	31	16	30	1.96
6737149--6737306	43	3.7	43	72	6	115	28	17	22	31	1.97
6751618--6752648	512	2.0	512	99	0	2053	31	25	14	28	1.95
6759739--6759916	46	3.9	46	90	0	257	23	30	9	36	1.87
6759940--6760838	47	19.1	47	99	0	1744	27	29	12	30	1.93
6764340--6764470	40	3.3	40	87	0	190	26	31	22	19	1.98
6766386--6766450	33	2.0	33	96	0	121	29	10	12	47	1.75
6773901--6773949	21	2.3	21	92	0	80	22	24	20	32	1.98
6782896--6783000	43	2.5	43	81	3	115	23	12	30	33	1.92
6783690--6783734	20	2.2	20	92	0	72	31	37	22	8	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6790063--6790148	43	2.0	43	86	0	118	23	19	31	25	1.98
6800529--6801066	180	3.0	179	91	2	837	33	18	8	39	1.81
6801623--6802067	50	8.8	50	77	6	373	30	24	18	26	1.98
6801626--6802017	151	2.6	151	87	2	563	29	25	19	26	1.98
6801623--6802063	101	4.4	103	75	6	323	30	25	18	26	1.98
6802519--6802649	43	3.0	43	94	0	226	41	24	5	28	1.76
6804426--6804458	17	1.9	17	93	0	57	54	6	0	39	1.25
6806462--6806515	21	2.7	20	88	5	74	42	0	20	37	1.52
6808287--6808351	24	2.7	24	76	9	60	38	3	30	27	1.72
6810105--6810193	27	3.3	25	75	10	79	23	16	17	41	1.90
6815510--6815552	18	2.4	18	100	0	86	9	20	9	60	1.55
6815634--6815665	16	2.0	16	93	0	55	34	18	0	46	1.49
6815876--6816253	50	7.5	50	75	8	347	31	25	16	26	1.96
6815926--6816107	101	1.8	101	81	4	233	32	25	15	26	1.95
6815868--6816260	151	2.6	151	90	1	635	30	25	17	26	1.97
6821397--6821542	73	2.0	72	83	7	181	30	28	17	23	1.97
6821416--6821597	72	2.5	73	76	8	174	30	30	17	21	1.96
6822273--6822311	20	2.0	20	85	10	53	35	20	0	43	1.52
6824842--6824932	42	2.2	42	92	4	148	38	25	13	23	1.91
6832377--6832441	21	3.0	21	70	12	60	41	21	12	24	1.87
6832377--6832457	43	1.9	42	92	2	135	38	22	13	25	1.91
6832397--6832455	22	2.8	20	70	12	55	38	20	15	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6840140--6840200	20	3.0	20	79	11	70	59	4	3	32	1.35
6840149--6840212	20	3.6	18	78	14	69	59	1	4	34	1.28
6840426--6840472	21	2.4	18	80	13	58	65	4	2	27	1.22
6845120--6846413	87	14.9	87	96	1	2152	31	23	16	28	1.96
6846380--6846751	170	2.2	170	84	3	494	28	18	18	34	1.95
6847659--6847720	7	9.1	7	79	13	76	0	17	0	82	0.67
6847662--6847732	20	3.5	20	82	7	90	0	16	0	83	0.66
6847660--6847729	27	2.5	28	82	13	83	0	17	0	82	0.66
6847660--6847732	14	5.3	13	82	9	83	0	16	0	83	0.64
6854297--6854360	20	3.6	18	78	14	69	59	0	4	35	1.18
6863714--6863769	26	2.2	26	93	0	94	32	12	10	44	1.77
6863939--6863969	6	5.2	6	100	0	62	16	16	0	67	1.23
6871933--6871964	15	2.1	15	100	0	64	34	6	21	37	1.79
6876606--6876656	3	17.3	3	79	4	50	64	0	35	0	0.94
6876732--6876826	50	1.9	50	93	0	163	26	14	14	44	1.84
6877804--6877869	31	2.2	31	83	8	82	24	12	15	48	1.78
6884327--6884448	50	2.5	49	81	5	133	27	22	13	37	1.91
6886064--6886110	13	3.6	13	82	0	58	63	2	2	31	1.18
6886148--6886218	31	2.3	31	82	7	81	39	1	29	29	1.66
6887052--6887085	10	3.5	10	88	4	52	58	8	0	32	1.29
6892237--6892284	24	1.9	24	87	8	69	33	2	4	60	1.27
6892237--6892284	25	2.0	24	84	12	62	33	2	4	60	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6896020--6896066	24	2.0	24	83	8	60	31	2	8	57	1.41
6899338--6899458	43	2.9	42	77	4	136	30	15	24	28	1.96
6899643--6899718	35	2.1	35	97	2	143	36	9	14	39	1.78
6910847--6911069	40	5.6	40	84	3	209	24	19	27	27	1.99
6910922--6911104	79	2.3	80	80	1	208	25	19	27	26	1.99
6917821--6917943	44	2.9	42	79	12	133	22	21	28	27	1.99
6920724--6920751	12	2.3	12	100	0	56	57	14	7	21	1.61
6921574--6921669	42	2.3	42	80	7	106	36	16	19	27	1.93
6923275--6923350	30	2.5	30	93	4	127	19	22	30	27	1.98
6923973--6924083	42	2.7	41	81	6	143	27	16	26	29	1.97
6931205--6931254	23	2.1	24	82	10	59	50	20	4	26	1.66
6944182--6944355	49	3.7	49	75	9	155	25	28	19	27	1.99
6945886--6946037	67	2.2	68	81	10	186	32	16	29	21	1.95
6951907--6951942	17	2.0	19	89	10	58	13	38	33	13	1.85
6957754--6957886	51	2.6	51	80	4	155	29	22	18	29	1.98
6976066--6976125	27	2.3	26	82	2	66	36	20	21	21	1.95
6978084--6978144	30	2.0	30	87	0	86	39	6	22	31	1.80
6981018--6981079	25	2.6	25	94	5	110	11	37	20	30	1.88
6996429--6996614	81	2.3	81	95	0	336	30	10	17	41	1.83
7003524--7003606	20	4.1	20	77	10	87	43	19	24	13	1.86
7003524--7003606	42	2.0	40	83	4	103	43	19	24	13	1.86
7018381--7018528	40	3.7	40	92	1	244	31	19	27	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7026425--7026602	27	6.6	26	80	6	169	26	16	28	28	1.97
7026426--7026581	82	1.9	81	86	3	224	26	16	28	28	1.97
7026422--7026602	82	2.2	81	82	2	220	26	16	28	28	1.97
7030935--7030959	4	6.2	4	100	0	50	24	24	0	52	1.48
7030777--7031732	472	2.0	478	92	2	1582	36	21	12	28	1.90
7034793--7034818	9	2.9	9	100	0	52	46	0	0	53	1.00
7037527--7037572	22	2.0	24	87	8	69	32	23	15	28	1.95
7040639--7040668	10	2.8	11	90	10	53	26	0	0	73	0.84
7040638--7040676	11	3.7	10	80	12	51	30	0	0	69	0.89
7041666--7041752	45	1.9	46	83	2	113	37	8	22	31	1.83
7042228--7042259	15	2.1	15	94	0	55	15	6	9	68	1.36
7042719--7042779	32	1.9	32	83	12	81	42	1	3	52	1.27
7042736--7042795	26	2.3	27	77	13	72	43	1	5	50	1.34
7061686--7061728	21	2.0	21	86	8	61	34	0	6	58	1.25
7061759--7061911	18	8.9	18	66	17	74	41	0	2	55	1.18
7061693--7061919	119	1.9	119	96	1	420	41	0	3	53	1.25
7071797--7071860	27	2.4	27	94	0	110	21	39	17	21	1.93
7077294--7077436	41	3.5	41	81	1	153	37	24	18	19	1.94
7080666--7080696	16	1.9	16	93	0	53	9	9	9	70	1.33
7082882--7083185	68	4.5	68	82	0	338	25	20	17	36	1.94
7082895--7083185	136	2.1	136	85	0	384	25	20	17	36	1.94
7087352--7087395	22	2.0	22	91	8	72	43	2	9	45	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7104169--7104284	61	1.9	61	98	0	223	19	38	14	26	1.91
7108329--7108397	28	2.5	28	90	0	102	31	11	26	30	1.91
7109124--7109362	23	10.1	23	72	9	194	24	15	16	43	1.86
7109122--7109358	71	3.3	71	89	2	350	24	15	16	43	1.87
7109290--7109393	50	2.1	50	87	3	149	26	12	19	41	1.87
7109308--7109424	50	2.4	48	83	8	139	27	11	18	41	1.86
7121997--7122089	35	2.6	35	84	1	105	43	24	13	18	1.87
7125398--7125433	18	2.1	18	89	5	56	50	0	0	50	1.00
7134151--7134190	3	13.3	3	89	0	62	35	5	0	60	1.19
7138485--7138530	17	2.8	18	84	15	64	28	41	30	0	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185