genome.fa.s5.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  131  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40225739--40225894	84	1.9	84	84	10	212	22	17	29	30	1.97
40226055--40226086	16	1.9	17	93	6	57	40	0	21	37	1.54
40233150--40233308	43	3.8	41	78	8	135	23	17	27	31	1.97
40233469--40233500	16	1.9	17	93	6	57	40	0	21	37	1.54
40242409--40242440	16	1.9	17	93	6	57	40	0	21	37	1.54
40246915--40246981	21	3.2	21	68	8	55	43	17	22	16	1.88
40256631--40256744	59	1.9	59	83	3	149	42	16	10	30	1.82
40257469--40257509	21	2.0	21	90	0	64	14	26	0	58	1.37
40258055--40258095	21	2.0	21	90	0	64	53	14	4	26	1.61
40259065--40259169	11	9.9	11	70	22	64	40	2	0	57	1.14
40259049--40259185	42	3.3	40	87	8	195	35	2	0	62	1.08
40259157--40259205	22	2.2	21	86	10	71	36	0	4	59	1.17
40259698--40259739	20	2.1	20	86	8	59	38	0	4	57	1.20
40260093--40260117	12	2.1	12	100	0	50	52	16	0	32	1.44
40260700--40260770	3	23.7	3	81	11	83	32	2	1	63	1.18
40260710--40260799	24	3.9	22	75	18	69	27	5	3	63	1.33
40261417--40261928	109	4.7	109	91	0	792	30	13	19	36	1.91
40266001--40266154	41	3.7	41	84	6	154	27	24	19	27	1.99
40266055--40266154	42	2.4	41	91	1	155	30	22	20	28	1.98
40267114--40267153	4	10.0	4	100	0	80	50	25	0	25	1.50
40272954--40272997	14	3.2	13	84	12	52	29	2	2	65	1.16
40273261--40273302	10	4.2	10	79	11	50	42	4	0	52	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40280968--40281025	30	1.9	30	89	0	89	41	3	24	31	1.71
40281237--40281268	13	2.5	13	94	0	55	31	0	12	56	1.37
40281363--40281604	50	4.7	50	86	4	297	26	24	29	19	1.99
40281363--40281612	100	2.4	103	88	6	364	26	24	29	20	1.99
40283168--40283215	19	2.5	19	83	10	53	60	10	0	29	1.30
40284618--40284651	17	2.1	17	94	5	61	20	5	26	47	1.73
40291911--40291943	16	2.1	16	94	0	57	39	6	33	21	1.78
40292156--40292691	120	4.5	120	95	0	916	50	5	2	42	1.38
40292272--40292318	16	3.0	16	78	12	53	51	2	0	46	1.13
40292391--40292437	16	3.0	16	78	12	53	51	2	0	46	1.13
40292536--40292570	18	2.0	17	88	5	52	54	0	0	45	0.99
40292156--40292691	239	2.2	240	93	1	916	50	5	2	42	1.38
40292562--40292591	16	1.9	15	93	6	51	50	10	0	40	1.36
40292673--40292840	47	3.7	46	70	18	143	47	3	2	45	1.35
40292732--40292864	44	3.0	44	68	22	121	50	3	1	45	1.26
40292829--40292867	17	2.5	15	84	12	51	58	0	0	41	0.98
40304322--40304355	17	1.9	18	88	5	52	41	0	8	50	1.34
40304782--40304832	27	1.9	26	84	4	66	68	7	0	23	1.15
40304917--40305313	151	2.6	151	89	2	602	30	9	7	52	1.59
40306407--40306959	153	3.7	149	86	4	754	52	7	9	29	1.62
40306407--40306981	151	3.8	151	85	4	757	53	8	9	29	1.62
40306408--40306993	303	1.9	302	87	3	854	53	8	10	28	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40307760--40307804	17	2.6	17	96	0	81	48	2	0	48	1.13
40313671--40313704	14	2.4	14	90	0	50	38	11	0	50	1.39
40325796--40325854	25	2.4	25	100	0	118	71	10	0	18	1.14
40327055--40327138	3	28.0	3	100	0	168	66	0	33	0	0.92
40327562--40327594	16	2.1	16	100	0	66	33	12	24	30	1.91
40328690--40328717	14	2.0	14	100	0	56	42	28	21	7	1.79
40329923--40329969	22	2.2	21	81	11	51	21	6	2	70	1.20
40330028--40330076	20	2.3	21	79	10	55	30	2	6	61	1.32
40330071--40330130	18	3.5	17	78	10	61	38	3	6	51	1.45
40345191--40345509	84	3.8	82	72	15	247	28	20	21	29	1.98
40345156--40345567	172	2.4	172	92	0	655	29	19	22	28	1.98
40345273--40345832	216	2.6	216	83	5	720	30	19	21	27	1.98
40345664--40345833	89	1.9	88	83	7	218	31	18	21	27	1.97
40344970--40345879	44	21.0	44	71	12	422	29	20	22	27	1.98
40345902--40345947	24	1.9	24	95	0	83	34	19	26	19	1.96
40347386--40347416	4	7.8	4	100	0	62	22	0	0	77	0.77
40347390--40347466	16	5.1	15	71	21	54	20	2	1	75	1.00
40347386--40347466	22	3.8	21	79	12	85	20	2	1	75	0.99
40348609--40348644	18	1.9	18	88	5	54	30	11	13	44	1.79
40349357--40349435	39	2.0	40	90	2	124	39	16	20	24	1.92
40349282--40349435	40	3.8	39	75	7	139	36	18	22	23	1.95
40349471--40349586	41	2.8	41	89	2	171	20	20	31	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40349804--40349878	21	3.5	22	75	8	75	28	0	30	41	1.56
40349820--40349860	14	2.9	15	82	10	59	29	0	31	39	1.57
40349873--40349935	22	2.9	22	85	4	74	19	0	42	38	1.51
40349966--40350008	11	3.8	12	78	9	54	30	0	0	69	0.88
40349965--40350018	23	2.3	24	84	6	76	37	0	0	62	0.95
40350216--40350256	21	2.0	21	95	0	73	26	0	43	29	1.55
40350213--40350266	21	2.5	20	82	11	72	24	0	42	33	1.55
40354814--40355052	43	5.6	43	87	1	273	26	17	29	26	1.98
40354814--40355038	85	2.6	86	82	2	256	26	17	28	27	1.98
40356864--40356925	22	2.7	22	90	5	88	48	1	1	48	1.21
40356899--40356936	16	2.4	16	91	4	60	50	2	5	42	1.39
40356985--40357156	86	2.0	86	97	0	326	40	5	6	47	1.53
40358117--40358153	6	6.2	6	93	0	65	35	0	64	0	0.94
40358121--40358161	18	2.3	18	87	8	57	41	0	58	0	0.98
40363659--40363694	18	2.1	17	94	5	63	13	38	5	41	1.68
40366106--40366251	77	1.9	77	85	5	206	29	15	15	39	1.88
40366994--40367032	7	5.6	7	96	0	69	30	15	0	53	1.42
40371762--40371852	42	2.2	42	93	0	155	23	25	13	38	1.91
40377504--40377542	19	2.1	19	85	9	53	25	2	5	66	1.25
40382618--40382723	44	2.4	44	100	0	212	26	13	23	36	1.92
40383938--40384043	31	3.7	27	79	15	99	41	5	22	30	1.77
40384315--40384356	11	3.6	11	81	12	57	35	0	4	59	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40395066--40395117	16	3.2	16	94	0	95	25	1	34	38	1.67
40395353--40395387	18	2.0	17	88	5	52	54	0	0	45	0.99
40395240--40395556	157	2.0	157	95	0	562	44	2	4	47	1.38
40395490--40395531	15	2.7	16	82	14	52	52	2	0	45	1.13
40395499--40395540	15	2.9	15	82	10	52	52	0	0	47	1.00
40398545--40398570	11	2.4	11	100	0	52	46	7	38	7	1.61
40401450--40401475	11	2.4	11	100	0	52	46	7	38	7	1.61
40401728--40401779	16	3.2	16	91	0	77	34	0	28	36	1.58
40401760--40401857	45	2.2	44	83	1	124	36	5	25	32	1.78
40402016--40402050	18	2.0	17	88	5	52	54	0	0	45	0.99
40401974--40402046	27	2.7	27	76	8	76	52	2	0	45	1.15
40402163--40402197	18	2.0	17	88	5	52	54	0	0	45	0.99
40401935--40402209	147	1.9	149	96	1	509	46	3	2	47	1.33
40402178--40402365	61	3.1	61	68	19	185	49	5	2	42	1.41
40402141--40402438	120	2.5	120	92	3	492	50	4	3	42	1.37
40402262--40402307	15	3.0	16	78	9	60	58	0	0	41	0.98
40402256--40402449	54	3.4	54	68	22	144	53	3	3	40	1.32
40403155--40403190	16	2.2	16	100	0	72	19	38	19	22	1.93
40409029--40409081	21	2.5	21	75	0	52	62	0	0	37	0.96
40411000--40411043	18	2.5	17	77	3	52	52	2	4	40	1.34
40415917--40416394	261	1.8	261	84	4	660	39	10	14	35	1.81
40416155--40416935	308	2.6	295	79	7	838	40	9	14	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40417520--40417552	17	2.0	17	88	5	50	42	0	0	57	0.98
40418880--40418917	18	2.1	18	90	0	58	42	7	36	13	1.73
40439068--40439211	2	72.0	2	97	0	270	0	0	50	48	1.11
40442024--40442056	16	2.1	16	100	0	66	48	6	6	39	1.53
40442359--40442401	22	2.0	22	85	0	59	32	2	6	58	1.38
40447622--40447668	19	2.5	19	86	6	60	25	19	10	44	1.82
40448906--40448942	17	2.1	18	90	5	58	29	24	0	45	1.53
40449693--40449736	16	2.6	17	86	13	65	81	0	15	2	0.78
40449701--40449741	16	2.7	15	88	7	64	78	0	21	0	0.76
40452182--40453011	50	16.8	50	76	7	721	31	21	20	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185