genome.fa.s5.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  149  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45133781--45133912	42	3.1	42	80	5	131	34	22	17	25	1.96
45134612--45134653	12	3.5	12	75	12	50	23	42	0	33	1.55
45136802--45136842	21	1.9	22	85	14	59	68	2	4	24	1.22
45139117--45139295	55	3.3	55	97	0	331	26	33	8	31	1.86
45141332--45141416	25	3.4	25	76	14	77	18	30	21	29	1.97
45141369--45141429	25	2.4	25	80	2	77	19	24	22	32	1.97
45141369--45141438	25	2.8	25	74	10	70	22	22	24	30	1.99
45142890--45142927	14	2.8	14	84	4	51	42	13	0	44	1.43
45143389--45143611	51	4.4	51	93	1	376	29	24	13	32	1.93
45143389--45143611	101	2.2	102	93	0	376	29	24	13	32	1.93
45143685--45143717	17	1.9	17	88	11	50	45	21	0	33	1.52
45146638--45146663	7	3.7	7	100	0	52	11	11	0	76	1.01
45149850--45149908	10	6.3	10	73	26	58	37	0	0	62	0.95
45149854--45149908	19	3.0	19	82	15	71	38	0	0	61	0.96
45149850--45149907	27	2.1	28	84	9	75	37	0	0	62	0.96
45151523--45151560	20	1.9	20	88	0	58	36	10	0	52	1.36
45158883--45159146	54	4.9	53	85	4	323	21	16	18	42	1.89
45158883--45159155	27	10.1	27	81	6	286	21	16	19	43	1.88
45162395--45162710	49	6.6	49	94	2	509	32	6	29	30	1.84
45166573--45166628	23	2.5	24	77	8	64	30	5	19	44	1.73
45178334--45178535	46	4.5	46	97	1	374	27	23	16	32	1.96
45181786--45181908	49	2.6	47	84	7	142	30	26	14	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45183188--45183573	46	8.5	46	96	0	688	28	22	16	32	1.96
45195304--45195763	44	10.4	44	74	6	315	27	16	26	29	1.97
45195304--45195766	88	5.3	89	76	4	411	27	16	26	29	1.97
45195302--45195763	132	3.5	132	94	0	798	27	16	26	29	1.97
45197553--45197586	7	4.9	7	100	0	68	11	0	0	88	0.52
45202344--45202383	20	2.0	20	100	0	80	45	0	0	55	0.99
45203675--45203745	35	2.0	35	97	0	133	21	25	16	36	1.94
45208339--45208404	26	2.6	26	79	11	73	21	22	19	36	1.95
45209464--45209717	114	2.2	113	83	5	271	20	23	26	29	1.99
45211669--45211727	24	2.5	24	91	0	91	37	18	25	18	1.94
45211742--45211797	23	2.4	23	84	0	76	46	16	25	12	1.81
45212486--45212539	28	1.9	28	81	7	65	33	16	7	42	1.76
45212788--45212818	15	2.1	15	100	0	62	32	32	0	35	1.58
45216583--45216645	28	2.2	29	81	18	80	46	1	0	52	1.10
45219628--45219685	29	2.0	29	96	0	107	20	22	24	32	1.98
45231760--45231784	7	3.6	7	100	0	50	24	0	12	64	1.27
45232005--45232096	17	5.4	18	69	23	58	52	4	2	41	1.33
45233904--45233954	25	2.0	25	100	0	102	15	11	19	52	1.73
45233979--45234028	18	2.8	18	84	0	64	68	0	0	32	0.90
45233986--45234034	18	2.7	17	84	9	53	63	0	2	34	1.06
45236860--45236893	3	11.7	3	93	6	61	29	0	0	70	0.87
45238445--45238511	21	3.2	20	72	6	53	46	17	20	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45238431--45238511	41	2.0	41	82	2	99	45	18	20	14	1.85
45245462--45245692	46	5.0	46	96	0	399	29	27	9	34	1.87
45246156--45246201	22	2.1	22	100	0	92	28	28	8	34	1.87
45246946--45246987	17	2.6	16	85	7	57	52	19	0	28	1.46
45247903--45248005	21	4.9	20	74	7	73	45	18	19	16	1.85
45247948--45248022	21	3.6	21	78	7	82	48	18	18	14	1.82
45247903--45248031	41	3.1	44	83	10	164	44	18	19	17	1.86
45258491--45258542	27	1.9	27	92	0	86	48	7	3	40	1.50
45261281--45261361	26	3.1	26	87	0	108	20	20	23	34	1.97
45266971--45267010	21	2.0	20	85	14	55	75	5	17	2	1.10
45267076--45267110	11	3.0	12	91	4	54	0	0	34	65	0.93
45269037--45269980	469	2.0	469	97	0	1798	28	16	26	28	1.97
45272244--45272324	26	3.1	26	87	0	117	19	22	24	33	1.97
45274485--45274540	24	2.3	23	80	19	62	53	3	3	39	1.36
45276363--45276426	19	3.0	21	74	21	62	43	3	3	50	1.33
45278159--45278264	55	1.9	54	81	9	126	22	33	0	44	1.53
45278321--45278379	17	3.4	17	73	17	66	33	3	5	57	1.37
45278652--45278689	19	2.0	19	94	0	67	34	10	21	34	1.87
45279063--45279261	41	4.8	40	76	8	148	20	23	23	33	1.97
45279126--45279280	41	3.8	42	84	8	126	20	22	25	31	1.98
45280273--45280332	27	2.2	28	82	8	72	46	5	6	41	1.52
45280769--45281031	116	2.3	116	81	3	278	28	17	18	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45283744--45283870	42	2.8	43	69	20	98	41	4	5	48	1.47
45284044--45284436	9	45.9	9	72	12	240	47	21	2	28	1.64
45284044--45284447	25	15.8	25	77	7	145	46	21	2	29	1.65
45284044--45284424	50	7.6	50	74	10	287	46	21	2	28	1.64
45284144--45284216	37	2.0	37	100	0	146	50	16	2	30	1.59
45284229--45284433	34	6.0	36	79	10	178	44	23	2	28	1.66
45289906--45289974	21	3.3	20	83	4	75	34	17	43	4	1.69
45290423--45290631	42	5.0	42	85	4	253	24	23	20	30	1.99
45290423--45290631	85	2.5	85	85	5	264	24	23	20	30	1.99
45295227--45295278	23	2.3	23	100	0	104	36	17	23	23	1.95
45302147--45302232	24	3.6	24	75	4	66	33	19	26	19	1.96
45302148--45302332	72	2.5	72	75	11	162	33	20	24	21	1.97
45302291--45302341	26	2.0	26	88	0	75	37	23	21	17	1.94
45304482--45304513	16	2.0	16	93	0	55	37	21	3	37	1.70
45311024--45311075	23	2.3	22	80	3	59	25	0	5	69	1.10
45336164--45336271	15	7.2	15	69	12	87	25	23	7	43	1.79
45336154--45336277	30	4.1	30	95	1	212	25	25	6	42	1.78
45340334--45340426	18	5.2	18	90	0	150	31	16	24	27	1.96
45340334--45340426	36	2.6	36	94	0	168	31	16	24	27	1.96
45340926--45341011	30	2.8	30	85	1	91	26	20	8	44	1.80
45340937--45341011	30	2.5	30	88	0	114	26	20	6	46	1.75
45343330--45343362	6	5.5	6	100	0	66	0	15	69	15	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45350656--45350712	30	1.9	29	85	3	78	22	24	36	15	1.94
45353385--45353513	21	6.2	21	68	8	66	17	20	18	44	1.87
45353385--45353518	42	3.2	42	85	3	155	16	20	18	44	1.86
45358297--45358328	16	2.0	16	100	0	64	43	18	6	31	1.75
45360964--45361000	16	2.2	17	86	13	51	54	0	2	43	1.14
45360952--45361121	66	2.9	54	70	20	153	48	3	2	44	1.34
45361162--45361222	28	2.2	28	85	5	81	50	3	0	45	1.17
45361169--45361312	45	3.1	46	64	23	104	48	4	2	44	1.36
45361137--45361344	91	2.3	90	89	4	317	46	4	3	45	1.41
45361162--45361304	44	3.2	43	66	20	103	47	3	2	46	1.34
45361187--45361325	47	3.0	46	68	17	126	48	4	2	43	1.37
45364076--45364141	33	2.0	33	100	0	132	36	6	15	42	1.71
45364884--45364958	23	3.3	23	80	14	93	53	21	8	17	1.69
45365057--45365101	18	2.5	18	92	0	81	57	20	8	13	1.62
45367598--45367636	14	2.7	15	84	11	55	48	10	10	30	1.70
45369452--45369494	18	2.3	19	88	4	61	53	4	0	41	1.21
45369471--45369528	26	2.2	27	81	9	66	51	6	0	41	1.28
45373824--45373866	3	14.3	3	100	0	86	32	0	0	67	0.91
45381937--45381965	2	14.5	2	100	0	58	48	0	51	0	1.00
45401234--45401264	5	6.2	5	92	0	53	22	0	58	19	1.40
45401620--45401682	30	2.1	30	90	0	99	57	12	3	26	1.51
45408437--45408470	17	2.0	17	94	0	59	11	8	41	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45411319--45411362	20	2.3	19	80	7	52	47	0	13	38	1.43
45411999--45412054	26	2.2	26	83	3	69	17	26	17	37	1.93
45413317--45413358	15	2.6	16	81	14	50	47	0	0	52	1.00
45413324--45413358	15	2.2	17	90	10	56	48	0	0	51	1.00
45421777--45421841	29	2.2	30	81	8	71	30	1	4	63	1.24
45424587--45424640	23	2.5	22	78	21	60	42	0	20	37	1.52
45425072--45425107	16	2.2	16	90	0	54	41	2	0	55	1.14
45425111--45425147	16	2.2	18	85	9	51	72	5	5	16	1.21
45425186--45425222	16	2.3	17	86	9	51	75	5	18	0	0.99
45433798--45433891	33	2.8	33	77	12	84	34	12	24	28	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185