genome.fa.s5.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  107  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33706276--33706336	17	3.4	17	70	12	50	49	14	4	31	1.65
33706267--33706341	37	2.0	37	97	0	141	44	16	6	33	1.73
33711027--33711227	44	4.4	44	72	15	126	32	20	19	27	1.97
33710848--33711215	138	2.7	136	80	3	407	31	19	21	28	1.97
33711069--33711280	94	2.3	94	83	0	253	31	19	19	30	1.96
33711125--33711326	94	2.1	94	82	1	244	29	19	22	29	1.98
33711260--33711346	44	2.0	44	84	4	113	28	20	24	26	1.99
33711719--33711760	21	2.0	22	90	4	68	73	19	0	7	1.05
33712203--33712238	17	2.1	17	94	0	63	22	16	8	52	1.70
33725491--33725534	22	2.0	22	95	0	79	43	15	0	40	1.47
33730662--33730724	6	10.5	6	94	0	72	1	0	55	42	1.09
33730656--33730724	12	5.8	12	89	0	84	2	0	53	43	1.15
33730656--33730724	18	3.8	18	86	0	84	2	0	53	43	1.15
33737709--33737837	25	5.2	25	71	16	81	33	21	23	21	1.97
33737750--33737797	23	2.1	23	88	0	69	31	22	29	16	1.96
33737779--33737849	26	2.8	26	80	2	81	35	22	23	18	1.96
33745700--33745747	19	2.9	16	75	19	53	58	4	16	20	1.55
33745694--33745748	16	3.2	17	76	16	60	56	3	20	20	1.57
33747978--33748018	20	2.0	20	100	0	82	14	14	4	65	1.42
33748824--33748858	14	2.8	12	84	16	52	51	0	0	48	1.00
33748831--33748859	14	2.1	14	100	0	58	48	0	0	51	1.00
33749107--33749156	13	3.9	13	82	15	68	16	18	4	62	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33749102--33749155	12	4.3	12	82	13	56	18	18	3	59	1.52
33752118--33752152	9	3.9	9	92	0	61	37	20	31	11	1.88
33753489--33753553	32	2.0	32	100	0	130	33	18	15	32	1.92
33761814--33761896	24	3.4	23	72	6	58	21	25	21	31	1.98
33762016--33762129	25	4.7	24	78	8	99	21	27	21	29	1.98
33762065--33762150	25	3.5	24	81	10	77	22	25	23	29	1.99
33764345--33764473	43	3.0	43	80	10	165	22	17	28	31	1.96
33771878--33771934	23	2.6	23	80	5	73	45	0	1	52	1.11
33771980--33772044	27	2.4	27	92	0	103	27	21	32	18	1.97
33772180--33772212	3	11.3	3	93	6	59	66	0	33	0	0.92
33772179--33772212	17	2.0	17	100	0	68	64	0	35	0	0.94
33772183--33772211	14	2.1	14	100	0	58	65	0	34	0	0.93
33772358--33772395	19	2.0	20	89	5	60	34	0	13	52	1.40
33772331--33772477	80	1.9	79	84	8	203	33	1	12	52	1.48
33772490--33772611	60	2.0	60	88	3	183	31	0	13	54	1.40
33772728--33772764	16	2.4	15	90	4	56	37	2	0	59	1.12
33775788--33775856	27	2.5	28	76	6	70	21	34	17	26	1.95
33775809--33775865	27	2.1	27	90	0	87	21	33	24	21	1.97
33788626--33788721	31	3.1	30	77	3	93	22	17	22	36	1.95
33788650--33788721	30	2.4	30	83	2	90	25	19	22	33	1.97
33791998--33792032	17	2.0	18	88	5	54	60	5	0	34	1.21
33791997--33792034	9	4.2	9	86	10	51	60	5	0	34	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33798590--33798614	5	5.0	5	100	0	50	0	60	40	0	0.97
33798637--33798666	11	2.6	11	94	5	51	36	3	0	60	1.14
33799349--33800130	126	6.2	126	89	2	1085	29	16	23	30	1.96
33803322--33803913	22	27.7	21	82	5	652	25	0	30	43	1.58
33803322--33803921	43	14.0	43	81	6	636	25	0	30	43	1.58
33803322--33803921	107	5.6	107	85	4	739	25	0	30	43	1.58
33803322--33803930	21	28.5	21	78	10	436	25	0	30	43	1.59
33804455--33804497	18	2.4	18	84	0	59	46	9	27	16	1.77
33805279--33805316	20	1.9	20	84	10	51	55	7	2	34	1.43
33806315--33806391	11	6.9	11	70	24	63	42	1	28	27	1.63
33806256--33806353	51	1.9	51	83	4	126	43	3	24	28	1.69
33806315--33806389	22	3.3	23	80	15	79	42	1	28	28	1.64
33806315--33806390	33	2.3	34	81	9	93	42	1	28	27	1.64
33807404--33807474	27	2.6	27	84	0	97	25	33	32	8	1.86
33807506--33807539	3	11.3	3	87	0	50	58	0	41	0	0.98
33807876--33807982	40	2.6	40	81	12	119	32	2	10	54	1.49
33807758--33807966	76	2.7	76	76	10	201	33	4	11	50	1.60
33810857--33810888	16	1.9	17	93	6	57	18	0	37	43	1.51
33812989--33813760	152	5.0	153	82	9	937	31	10	6	51	1.62
33815372--33815436	17	3.8	17	78	13	62	70	0	4	24	1.06
33815371--33815426	24	2.2	25	87	6	78	69	0	3	26	1.04
33820074--33820459	75	5.1	75	88	0	502	33	16	18	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33828687--33828740	27	2.0	27	92	0	90	46	5	24	24	1.74
33828686--33828740	23	2.4	23	81	0	65	45	7	23	23	1.78
33828687--33828730	4	11.2	4	85	4	63	47	2	25	25	1.63
33831708--33831734	13	2.1	13	100	0	54	66	14	0	18	1.25
33832247--33832278	17	1.9	17	93	6	57	15	0	0	84	0.63
33832241--33832809	303	1.9	304	89	1	881	12	19	31	36	1.89
33833023--33833059	15	2.6	14	87	8	56	16	0	2	81	0.81
33833367--33833445	29	2.7	29	86	4	104	41	2	20	35	1.66
33833727--33833778	27	1.9	27	92	0	86	32	1	28	36	1.69
33836385--33836429	17	2.8	16	83	6	54	64	4	6	24	1.37
33838735--33838849	50	2.3	50	79	8	126	30	19	16	33	1.94
33840924--33840979	25	2.2	25	83	0	67	35	19	21	23	1.96
33840938--33841012	25	3.0	24	82	3	78	36	18	26	18	1.94
33840949--33841031	25	3.3	25	81	0	76	36	16	28	18	1.93
33842356--33842513	79	2.0	80	80	6	178	40	8	13	37	1.76
33843148--33843233	41	2.1	41	91	0	136	30	19	20	29	1.97
33845245--33845286	15	2.8	15	96	0	75	14	16	4	64	1.45
33853782--33853836	22	2.5	24	85	11	73	29	18	3	49	1.64
33854422--33854494	5	14.4	5	78	18	71	56	0	0	43	0.99
33854418--33854494	24	3.3	23	80	10	77	54	0	0	45	0.99
33854421--33854489	36	1.9	36	85	5	95	55	0	0	44	0.99
33854422--33854504	14	6.2	13	73	13	53	56	2	0	40	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33857782--33857815	7	4.9	7	100	0	68	41	0	0	58	0.98
33859725--33859766	14	2.9	15	83	16	54	33	0	14	52	1.42
33860375--33860416	18	2.3	18	87	0	57	23	28	2	45	1.66
33861343--33861677	124	2.7	124	93	0	573	29	15	22	32	1.95
33864062--33864118	24	2.3	25	93	3	98	43	14	0	42	1.44
33864591--33864630	18	2.2	18	95	0	71	40	7	30	22	1.81
33865462--33865499	20	1.9	20	84	10	51	55	7	2	34	1.43
33889942--33890033	31	3.0	29	79	17	89	47	2	1	48	1.20
33889963--33890032	30	2.4	28	77	13	68	47	2	1	48	1.25
33891146--33891197	21	2.4	23	81	18	67	28	7	0	63	1.22
33891563--33891612	25	2.0	25	84	0	64	50	2	2	46	1.24
33893872--33893940	36	1.9	35	82	8	86	55	0	8	36	1.31
33900434--33900482	24	2.0	25	84	4	64	28	22	2	46	1.63
33901771--33901810	18	2.3	18	87	8	57	27	2	7	62	1.35
33904113--33904185	37	2.0	37	97	0	137	34	24	9	31	1.88
33904113--33904205	37	2.4	37	89	5	132	35	25	8	30	1.86
33904550--33904588	11	3.5	11	82	0	51	25	12	2	58	1.47
33907307--33907333	13	2.1	13	100	0	54	37	14	7	40	1.74
33911383--33911670	142	2.0	140	90	2	452	34	10	20	34	1.87
33922902--33923073	24	6.9	26	69	12	76	35	21	23	19	1.96
33928132--33928181	26	1.9	26	100	0	100	72	4	10	14	1.26
33930613--33930731	38	3.1	39	76	4	116	24	13	21	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33931890--33931931	21	2.0	21	85	0	57	33	4	19	42	1.72
33932675--33932740	26	2.5	26	83	7	80	19	24	19	36	1.95
33940956--33941324	46	8.3	46	83	11	423	36	14	20	27	1.92
33941070--33941143	37	2.0	37	97	0	139	39	16	20	24	1.92
33940956--33941324	181	2.1	175	95	3	657	36	14	20	27	1.92
33940890--33941357	227	2.1	218	91	3	738	36	14	20	27	1.93
33941251--33941379	37	3.5	37	97	0	240	37	17	19	25	1.94
33950016--33950147	41	3.2	41	92	0	210	29	18	24	27	1.98
33950592--33950623	9	3.4	10	83	16	50	40	9	9	40	1.70
33955707--33955746	4	10.0	4	100	0	80	50	25	0	25	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185