genome.fa.s5.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  35  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10358881--10360295	23	62.3	23	69	10	413	40	24	4	30	1.76
10358849--10360353	182	8.3	182	84	2	1808	40	24	4	30	1.75
10358849--10360352	362	4.1	363	86	2	1858	40	24	4	30	1.75
10359833--10360155	136	2.4	136	87	1	432	40	23	4	30	1.75
10370014--10370068	20	2.8	20	80	0	65	41	18	30	9	1.81
10377070--10377108	14	2.7	14	84	4	51	58	2	2	35	1.25
10378535--10378571	13	2.9	12	88	11	56	0	0	13	86	0.57
10378535--10378571	11	3.5	10	89	10	56	0	0	13	86	0.57
10378847--10379234	50	7.8	50	71	3	305	23	18	22	35	1.95
10378852--10379263	100	4.1	100	94	0	653	24	18	22	34	1.96
10379258--10379940	217	3.1	217	92	0	1132	29	20	18	32	1.96
10379712--10379824	41	2.6	44	81	4	133	29	20	18	31	1.96
10379879--10380313	129	3.4	129	90	2	653	25	22	18	33	1.97
10381533--10381577	7	6.4	7	82	14	58	15	15	0	68	1.21
10381533--10381577	13	3.2	15	84	12	60	15	15	0	68	1.21
10382446--10382483	13	3.0	13	88	3	51	10	7	0	81	0.87
10382459--10382507	12	3.7	14	81	13	50	14	2	8	75	1.12
10382480--10382523	6	7.3	6	97	0	79	15	2	15	65	1.36
10382504--10382589	42	2.1	41	83	12	106	10	8	9	72	1.29
10390395--10390433	14	2.7	14	84	4	51	58	2	2	35	1.25
10396008--10396046	20	1.9	20	89	5	60	48	0	2	48	1.15
10396315--10396373	10	6.4	9	76	7	57	22	40	3	33	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10400890--10401056	81	2.1	81	90	0	262	34	19	18	27	1.95
10405289--10405842	277	2.0	278	87	1	808	39	12	20	28	1.88
10406657--10406695	9	4.1	9	86	6	51	0	17	0	82	0.68
10407475--10407505	6	5.2	6	92	0	53	83	12	0	3	0.75
10429839--10430032	51	3.8	51	75	10	175	25	15	26	32	1.95
10430038--10430126	46	2.0	44	84	8	117	24	17	24	32	1.97
10430237--10430309	37	1.9	38	83	2	94	46	4	19	30	1.68
10431957--10432023	25	2.7	25	73	15	66	49	7	10	32	1.65
10437807--10437851	23	1.9	24	86	4	65	35	2	11	51	1.50
10448324--10448368	23	1.9	24	86	4	65	35	2	11	51	1.50
10448784--10448821	19	2.0	19	85	10	51	21	42	0	36	1.53
10459160--10459200	20	2.0	20	85	4	55	19	4	9	65	1.40
10462724--10462782	24	2.6	23	86	5	75	8	20	18	52	1.71
10463814--10463857	23	1.9	23	85	0	61	18	27	18	36	1.94
10468065--10468167	51	2.0	51	98	0	197	24	7	18	49	1.73
10468084--10468169	26	3.3	27	65	22	76	24	9	19	46	1.79
10469917--10469978	32	2.0	32	87	6	92	32	19	4	43	1.72
10471573--10472138	125	4.5	124	83	5	710	29	17	23	29	1.97
10471573--10472138	126	4.5	124	83	5	701	29	17	23	29	1.97
10471573--10472138	250	2.3	250	87	3	784	29	17	23	29	1.97
10473284--10473666	22	17.0	22	76	12	334	26	0	29	42	1.61
10473284--10473658	43	8.3	43	79	10	378	26	0	29	42	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10473441--10473490	8	6.5	8	78	17	52	30	0	22	48	1.51
10473431--10473534	52	2.0	52	84	3	138	30	0	25	43	1.61
10473311--10473626	160	2.0	160	88	3	467	27	0	28	43	1.62
10474218--10474260	18	2.4	18	84	0	59	46	9	27	16	1.77
10474878--10474909	7	4.7	7	92	7	57	56	15	0	28	1.40
10474878--10474909	13	2.4	14	94	5	57	56	15	0	28	1.40
10476053--10476150	51	1.9	51	87	4	144	45	3	24	26	1.67
10476112--10476188	11	6.9	11	73	24	72	45	1	27	25	1.61
10476112--10476188	33	2.3	33	82	10	102	45	1	27	25	1.61
10476919--10476958	21	2.0	21	85	5	55	45	0	5	50	1.23
10477500--10477622	61	2.0	61	98	0	237	31	24	17	26	1.97
10484315--10484367	28	2.0	26	82	10	63	35	1	3	58	1.27
10485472--10485518	7	6.7	7	95	0	85	27	2	14	55	1.51
10486173--10486215	18	2.4	18	88	0	59	18	27	9	44	1.80
10489912--10490327	126	3.3	126	91	1	629	29	22	16	31	1.96
10490367--10490545	98	1.9	95	84	5	243	40	15	5	39	1.69
10490596--10490661	33	1.9	33	87	6	96	48	39	0	12	1.40
10492600--10492690	48	1.9	47	88	2	137	39	26	15	18	1.90
10499307--10499458	27	5.6	27	82	4	153	30	26	15	27	1.96
10499307--10499460	55	2.8	54	81	3	166	31	25	14	27	1.95
10503639--10503901	40	6.6	39	86	4	278	25	27	21	25	1.99
10503639--10503901	120	2.2	119	82	4	307	25	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10503833--10503910	40	1.9	41	82	10	97	26	28	20	24	1.99
10511585--10511756	40	4.3	40	88	2	222	25	27	21	25	1.99
10511587--10511809	40	5.6	39	83	5	216	25	27	21	25	1.99
10511585--10511809	80	2.8	79	80	7	240	25	27	21	25	1.99
10511741--10511818	40	1.9	41	82	10	97	26	28	20	24	1.99
10519129--10519155	5	5.4	5	100	0	54	18	0	0	81	0.69
10527596--10527643	3	16.0	3	85	8	62	2	2	27	68	1.11
10533485--10533553	21	3.3	21	95	0	120	46	18	23	11	1.82
10535684--10535801	41	2.9	41	85	0	164	23	24	24	27	2.00
10536207--10536240	14	2.3	15	90	5	52	35	0	29	35	1.58
10536327--10536502	89	2.0	89	91	0	289	25	1	30	43	1.62
10536471--10536511	21	1.9	22	85	5	57	9	0	51	39	1.35
10537228--10537292	22	2.9	23	77	9	80	26	44	3	26	1.69
10541138--10541377	43	5.6	42	83	6	164	22	16	30	31	1.95
10541178--10541377	43	4.7	43	85	3	260	21	17	32	30	1.95
10541442--10541483	22	1.9	22	95	0	75	40	28	21	9	1.84
10542906--10542957	26	2.1	24	82	7	59	61	5	0	32	1.20
10544353--10544395	18	2.4	17	77	11	50	34	4	2	58	1.32
10555371--10555437	29	2.3	29	89	0	98	26	20	13	38	1.90
10561995--10562025	9	3.4	9	90	0	53	25	12	22	38	1.90
10569423--10569482	30	2.0	30	96	0	111	28	20	13	38	1.90
10589041--10589083	22	2.0	23	86	9	63	51	2	2	44	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10589359--10589399	21	2.0	21	95	0	73	31	31	7	29	1.85
10597546--10597809	40	6.7	40	87	5	342	25	20	27	26	1.99
10597546--10597842	120	2.5	119	81	10	342	26	20	27	25	1.99
10605739--10605962	79	2.8	80	85	7	280	25	22	27	25	2.00
10605739--10605962	40	5.7	40	85	6	280	25	22	27	25	2.00
10605739--10605995	79	3.2	80	82	8	235	26	21	27	24	1.99
10610704--10610748	9	5.2	9	77	17	51	26	2	2	68	1.12
10612822--10612865	9	4.8	9	86	11	54	22	18	13	45	1.84
10612830--10612869	5	8.4	5	79	20	50	25	20	15	40	1.90
10615445--10615498	10	4.9	11	77	18	51	79	0	18	1	0.82
10615445--10615497	17	3.1	16	84	10	70	81	0	16	1	0.79
10616359--10617162	143	5.6	143	86	1	1085	30	19	21	28	1.97
10617131--10617423	44	6.9	43	68	9	136	30	20	20	28	1.98
10618641--10618672	17	1.9	17	93	6	57	21	3	0	75	0.95
10618641--10618672	8	3.9	8	92	8	55	21	3	0	75	0.95
10623361--10623400	15	2.7	15	92	0	62	37	32	7	22	1.82
10624065--10624210	4	36.0	4	72	21	60	69	1	27	1	1.04
10624062--10624134	36	2.0	36	100	0	146	64	2	30	2	1.21
10624064--10624239	36	5.3	36	76	15	141	69	1	28	1	1.03
10624132--10624238	14	7.3	13	71	24	72	73	0	26	0	0.83
10624101--10624230	43	2.8	47	79	13	126	70	0	27	0	0.97
10624136--10624239	31	3.0	35	82	10	108	72	0	27	0	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10624952--10625007	27	2.1	27	100	0	112	42	14	35	7	1.73
10628993--10629154	81	2.0	81	98	0	315	40	25	9	24	1.86
10634181--10634264	25	3.4	24	79	11	89	25	20	23	30	1.98
10635217--10635270	12	4.7	12	73	17	51	29	5	0	64	1.16
10635215--10635278	20	3.5	20	74	24	77	29	4	0	65	1.13
10635208--10635275	34	2.0	34	97	0	127	27	4	0	67	1.09
10637682--10637785	52	2.0	52	98	0	199	48	15	20	16	1.82
10638579--10638631	4	13.2	4	75	0	52	22	33	1	41	1.65
10644038--10644380	42	8.2	42	88	1	454	20	18	23	37	1.94
10645129--10645282	77	2.0	77	98	0	299	33	9	6	50	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185